Wall clock time and date at job start Tue Mar 31 2020 12:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99918 * 2 1 4 4 O 1.20816 * 120.00214 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99652 * 180.02562 * 3 2 1 6 6 C 1.50701 * 109.46998 * 179.97438 * 5 3 2 7 7 C 1.38234 * 119.99968 * 90.00269 * 6 5 3 8 8 C 1.38233 * 119.99729 * 179.97438 * 7 6 5 9 9 C 1.38235 * 120.00412 * 359.96814 * 8 7 6 10 10 C 1.50699 * 120.00258 * 180.02562 * 9 8 7 11 11 O 1.42901 * 109.46699 * 90.00180 * 10 9 8 12 12 C 1.42905 * 113.99641 * 179.97438 * 11 10 9 13 13 H 1.08993 * 110.64055 * 26.86435 * 12 11 10 14 14 C 1.55157 * 110.71656 * 150.00029 * 12 11 10 15 15 C 1.54918 * 101.58155 * 154.04156 * 14 12 11 16 16 N 1.47425 * 104.82827 * 322.99497 * 15 14 12 17 17 C 1.36938 * 125.64303 * 204.16846 * 16 15 14 18 18 H 1.08000 * 120.00302 * 179.97438 * 17 16 15 19 19 C 1.38815 * 119.99963 * 359.94942 * 17 16 15 20 20 N 1.31611 * 120.00219 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99684 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47439 * 89.99876 * 21 19 17 23 23 H 1.48500 * 109.46942 * 209.99918 * 21 19 17 24 24 H 1.48502 * 109.47531 * 329.99599 * 21 19 17 25 25 C 1.47015 * 108.70882 * 24.12597 * 16 15 14 26 26 C 1.38237 * 119.99493 * 0.28407 * 9 8 7 27 27 C 1.38230 * 120.00340 * 359.53006 * 26 9 8 28 28 H 1.09004 * 109.46787 * 300.00475 * 1 2 3 29 29 H 1.08999 * 109.46676 * 59.99765 * 1 2 3 30 30 H 1.08992 * 109.47152 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47426 * 59.99474 * 5 3 2 32 32 H 1.09001 * 109.47281 * 299.99452 * 5 3 2 33 33 H 1.07999 * 120.00335 * 359.97438 * 7 6 5 34 34 H 1.08006 * 119.99997 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46981 * 330.00654 * 10 9 8 36 36 H 1.08995 * 109.47169 * 210.00454 * 10 9 8 37 37 H 1.09001 * 111.00846 * 272.11864 * 14 12 11 38 38 H 1.09000 * 111.00346 * 35.97396 * 14 12 11 39 39 H 1.08999 * 110.35942 * 81.82689 * 15 14 12 40 40 H 1.08996 * 110.36556 * 204.15522 * 15 14 12 41 41 H 0.97005 * 120.00154 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.88350 * 239.52260 * 25 16 15 43 43 H 1.08998 * 109.88602 * 118.35926 * 25 16 15 44 44 H 1.08000 * 119.99874 * 179.72642 * 26 9 8 45 45 H 1.07992 * 120.00316 * 180.23157 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 3.9937 2.7200 -0.0011 7 6 4.1902 3.3830 1.1958 8 6 4.5827 4.7085 1.1953 9 6 4.7793 5.3707 -0.0021 10 6 5.2078 6.8155 -0.0026 11 8 6.6349 6.8890 -0.0025 12 6 7.1481 8.2228 -0.0036 13 1 6.4368 8.9085 0.4567 14 6 8.5181 8.2843 0.7221 15 6 9.1710 9.5179 0.0499 16 7 8.7437 9.4500 -1.3594 17 6 9.4011 10.0128 -2.4206 18 1 9.0051 9.9057 -3.4196 19 6 10.5765 10.7214 -2.2123 20 7 11.0587 10.8528 -0.9947 21 14 11.4737 11.4885 -3.6601 22 1 10.9722 12.8691 -3.8780 23 1 12.9302 11.5303 -3.3739 24 1 11.2319 10.6758 -4.8792 25 6 7.4954 8.6771 -1.4370 26 6 4.5778 4.7090 -1.1990 27 6 4.1890 3.3825 -1.1985 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9558 0.7808 -0.8907 32 1 3.9565 0.7806 0.8892 33 1 4.0371 2.8656 2.1313 34 1 4.7366 5.2265 2.1304 35 1 4.8184 7.3102 0.8872 36 1 4.8185 7.3096 -0.8928 37 1 8.3867 8.4461 1.7920 38 1 9.1009 7.3826 0.5336 39 1 8.8101 10.4368 0.5119 40 1 10.2570 9.4579 0.1204 41 1 11.8802 11.3476 -0.8492 42 1 7.6375 7.8068 -2.0776 43 1 6.6954 9.3036 -1.8314 44 1 4.7271 5.2276 -2.1345 45 1 4.0352 2.8646 -2.1336 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223477488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:58 Heat of formation + Delta-G solvation = -96.765946 kcal Electronic energy + Delta-G solvation = -25535.361395 eV Core-core repulsion = 21711.101015 eV Total energy + Delta-G solvation = -3824.260379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60487 -40.44419 -39.64940 -37.69148 -37.35761 -34.62889 -33.92028 -31.87856 -31.24253 -30.44395 -28.88417 -28.24422 -26.49022 -25.68199 -23.71215 -22.65989 -22.07734 -21.79218 -21.36266 -18.99346 -18.66210 -18.05613 -17.72787 -17.60411 -17.02105 -16.71862 -16.66703 -16.17066 -15.96741 -15.48983 -15.04850 -14.73132 -14.58179 -14.47517 -14.29570 -14.22670 -13.64675 -13.61375 -13.40095 -13.11841 -13.03055 -12.93338 -12.83420 -12.65517 -12.44762 -12.27289 -12.02078 -11.89432 -11.86787 -11.79658 -11.74457 -11.58545 -11.34039 -10.76839 -10.50422 -9.83188 -9.66594 -8.92344 -7.79197 -5.24544 0.18828 0.49663 1.18617 1.46314 1.48702 1.57576 1.80567 2.45863 2.58473 3.08397 3.31431 3.56806 3.71217 3.78650 3.84917 3.93640 4.02998 4.09348 4.11618 4.17246 4.19728 4.31775 4.32908 4.41425 4.50296 4.57089 4.60933 4.64285 4.72422 4.76380 4.78824 4.98754 5.00845 5.02136 5.04251 5.13905 5.38331 5.42274 5.43828 5.55869 5.59821 5.66632 5.76821 6.04416 6.25642 6.32703 6.73536 7.08355 7.74509 8.38344 9.22914 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034983 B = 0.001928 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.196093 B =14517.003605 C =14909.323908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.462 3.538 4 O -0.537 6.537 5 C -0.068 4.068 6 C -0.083 4.083 7 C -0.112 4.112 8 C -0.109 4.109 9 C -0.099 4.099 10 C 0.096 3.904 11 O -0.381 6.381 12 C 0.092 3.908 13 H 0.085 0.915 14 C -0.125 4.125 15 C 0.154 3.846 16 N -0.625 5.625 17 C -0.244 4.244 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.984 3.016 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.271 1.271 25 C 0.115 3.885 26 C -0.114 4.114 27 C -0.114 4.114 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.061 0.939 39 H -0.003 1.003 40 H 0.078 0.922 41 H 0.249 0.751 42 H 0.024 0.976 43 H 0.027 0.973 44 H 0.125 0.875 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 -23.174 5.436 31.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.307 3.693 4 O -0.426 6.426 5 C -0.104 4.104 6 C -0.083 4.083 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.099 4.099 10 C 0.020 3.980 11 O -0.300 6.300 12 C 0.034 3.966 13 H 0.103 0.897 14 C -0.164 4.164 15 C 0.029 3.971 16 N -0.352 5.352 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.812 3.188 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.196 1.196 25 C -0.011 4.011 26 C -0.132 4.132 27 C -0.132 4.132 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.015 0.985 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.045 0.955 44 H 0.143 0.857 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.956 -22.952 5.384 30.888 hybrid contribution 0.170 1.223 -0.829 1.488 sum -19.786 -21.729 4.554 29.738 Atomic orbital electron populations 1.23511 0.75071 1.05599 1.02301 1.86502 1.24736 1.32854 1.83866 1.24142 0.92722 0.81051 0.71432 1.90706 1.68052 1.37541 1.46308 1.20420 0.86250 0.94350 1.09403 1.19559 0.99944 0.95252 0.93563 1.21264 0.98901 0.94391 0.98425 1.21247 0.98549 0.95101 0.97759 1.19777 1.00521 0.95251 0.94327 1.21511 0.81234 0.93548 1.01737 1.87988 1.20708 1.26418 1.94914 1.22983 0.95666 0.83500 0.94485 0.89669 1.22978 0.94720 0.98947 0.99736 1.21753 1.00519 0.92337 0.82451 1.44698 1.24619 1.61821 1.04110 1.19458 1.03854 1.26231 0.87684 0.90302 1.25678 0.99017 1.01575 0.99633 1.70026 1.22872 1.46602 1.20257 0.84998 0.77271 0.78165 0.78383 1.21166 1.21666 1.19561 1.21825 0.88472 0.94017 0.96801 1.21227 0.98901 0.95255 0.97853 1.21226 0.99137 0.94304 0.98526 0.92199 0.92317 0.85045 0.84149 0.83847 0.83708 0.84661 0.90946 0.92310 0.88914 0.91977 0.98465 0.90427 0.94126 0.95822 0.95546 0.85692 0.84210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.36 -4.96 10.57 -51.42 -0.54 -5.51 16 3 C 0.46 7.59 7.95 71.24 0.57 8.16 16 4 O -0.54 -13.03 15.78 21.99 0.35 -12.68 16 5 C -0.07 -0.74 5.94 29.10 0.17 -0.57 16 6 C -0.08 -1.50 4.37 -19.86 -0.09 -1.59 16 7 C -0.11 -2.12 9.70 22.27 0.22 -1.90 16 8 C -0.11 -2.42 9.70 22.27 0.22 -2.21 16 9 C -0.10 -2.52 5.51 -19.87 -0.11 -2.63 16 10 C 0.10 2.57 5.90 71.24 0.42 3.00 16 11 O -0.38 -12.99 10.06 -148.98 -1.50 -14.49 16 12 C 0.09 3.38 3.44 31.78 0.11 3.49 16 13 H 0.09 2.78 7.82 -2.39 -0.02 2.76 16 14 C -0.13 -4.99 6.81 31.99 0.22 -4.77 16 15 C 0.15 7.87 5.89 86.86 0.51 8.38 16 16 N -0.63 -33.91 3.39 -691.99 -2.35 -36.26 16 17 C -0.24 -14.18 10.27 84.03 0.86 -13.31 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.39 16 19 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 20 N -0.95 -57.28 10.09 21.65 0.22 -57.06 16 21 Si 0.98 46.42 29.55 68.60 2.03 48.45 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 C 0.11 5.11 7.02 86.73 0.61 5.72 16 26 C -0.11 -2.78 9.70 22.27 0.22 -2.57 16 27 C -0.11 -2.33 9.70 22.27 0.22 -2.11 16 28 H 0.06 0.62 8.13 -2.39 -0.02 0.60 16 29 H 0.06 0.62 8.13 -2.39 -0.02 0.61 16 30 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.14 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.14 0.81 8.09 -2.39 -0.02 0.79 16 33 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.07 1.68 8.06 -2.39 -0.02 1.66 16 36 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.08 4.47 5.87 -2.39 -0.01 4.46 16 41 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 42 H 0.02 1.09 8.06 -2.39 -0.02 1.07 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 45 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -75.19 378.14 4.97 -70.22 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.97 Total: 12.17 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.80 Total: -4.84 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -2.13 Total: -93.32 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.70 Total: -32.68 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -75.19 4.97 -70.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223477488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.550 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds