Wall clock time and date at job start Tue Mar 31 2020 12:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99801 * 2 1 4 4 O 1.20829 * 119.99799 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99944 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47338 * 180.02562 * 5 3 2 7 7 C 1.38260 * 120.00075 * 265.02639 * 6 5 3 8 8 C 1.38211 * 120.00008 * 179.97438 * 7 6 5 9 9 C 1.38258 * 120.00175 * 359.79887 * 8 7 6 10 10 C 1.38211 * 119.99774 * 0.43545 * 9 8 7 11 11 C 1.38215 * 120.00244 * 84.99485 * 6 5 3 12 12 C 1.50702 * 119.99534 * 0.02562 * 11 6 5 13 13 O 1.42907 * 109.46586 * 179.97438 * 12 11 6 14 14 C 1.42902 * 113.99827 * 179.97438 * 13 12 11 15 15 C 1.53932 * 113.73494 * 248.76942 * 14 13 12 16 16 N 1.48191 * 86.09751 * 221.95639 * 15 14 13 17 17 C 1.46907 * 111.07132 * 137.52340 * 16 15 14 18 18 C 1.50693 * 109.47358 * 70.56268 * 17 16 15 19 19 H 1.07995 * 120.00271 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99905 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00219 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00012 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47241 * 90.00416 * 22 20 18 24 24 H 1.48501 * 109.46905 * 210.00441 * 22 20 18 25 25 H 1.48498 * 109.46938 * 330.00013 * 22 20 18 26 26 C 1.47955 * 90.80274 * 24.59732 * 16 15 14 27 27 H 1.09003 * 109.46624 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47078 * 299.99592 * 1 2 3 29 29 H 1.08998 * 109.47529 * 60.00479 * 1 2 3 30 30 H 1.08998 * 109.47611 * 59.99716 * 5 3 2 31 31 H 1.09002 * 109.47197 * 299.99867 * 5 3 2 32 32 H 1.08001 * 119.99600 * 359.97438 * 7 6 5 33 33 H 1.08003 * 119.99444 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.99848 * 180.23501 * 9 8 7 35 35 H 1.08002 * 120.00200 * 179.80765 * 10 9 8 36 36 H 1.08998 * 109.46697 * 299.97069 * 12 11 6 37 37 H 1.08988 * 109.47542 * 59.97638 * 12 11 6 38 38 H 1.09004 * 112.93464 * 20.33553 * 14 13 12 39 39 H 1.08999 * 113.76072 * 336.23124 * 15 14 13 40 40 H 1.09003 * 113.76372 * 107.60328 * 15 14 13 41 41 H 1.09000 * 109.46861 * 190.56936 * 17 16 15 42 42 H 1.09009 * 109.46414 * 310.56084 * 17 16 15 43 43 H 0.97001 * 120.00508 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.76229 * 221.08736 * 26 16 15 45 45 H 1.09004 * 113.85763 * 89.73200 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 3.9935 2.7201 0.0002 7 6 4.2886 3.3544 -1.1924 8 6 4.6800 4.6799 -1.1917 9 6 4.7724 5.3728 0.0011 10 6 4.4821 4.7374 1.1937 11 6 4.0899 3.4117 1.1930 12 6 3.7681 2.7203 2.4928 13 8 3.9415 3.6370 3.5754 14 6 3.6598 3.0787 4.8604 15 6 2.3955 3.6552 5.5227 16 7 3.1838 3.6731 6.7774 17 6 2.9586 4.9175 7.5251 18 6 1.5632 4.9161 8.0940 19 1 0.9092 4.0748 7.9183 20 6 1.1214 5.9889 8.8390 21 7 -0.0965 5.9879 9.3351 22 14 2.2528 7.4437 9.1436 23 1 2.0774 8.4428 8.0590 24 1 1.9177 8.0665 10.4493 25 1 3.6628 6.9783 9.1646 26 6 4.4460 3.7378 6.0081 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9563 0.7807 0.8892 32 1 4.2132 2.8140 -2.1244 33 1 4.9100 5.1754 -2.1234 34 1 5.0746 6.4097 0.0012 35 1 4.5574 5.2778 2.1258 36 1 2.7354 2.3723 2.4732 37 1 4.4358 1.8694 2.6268 38 1 3.7018 1.9895 4.8688 39 1 2.1234 4.6468 5.1610 40 1 1.5544 2.9622 5.5411 41 1 3.6821 4.9895 8.3371 42 1 3.0774 5.7698 6.8559 43 1 -0.4073 6.7425 9.8596 44 1 5.2400 3.1107 6.4133 45 1 4.7765 4.7529 5.7877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224236948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:55 Heat of formation + Delta-G solvation = -64.036661 kcal Electronic energy + Delta-G solvation = -26368.925016 eV Core-core repulsion = 22546.083885 eV Total energy + Delta-G solvation = -3822.841131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92619 -39.73516 -39.20704 -36.72607 -36.56980 -33.49940 -32.77214 -31.68733 -29.57804 -29.11073 -27.25391 -26.23122 -25.68232 -24.89567 -22.59752 -21.72598 -21.17053 -20.57800 -19.37273 -17.93692 -17.16354 -17.09135 -16.83687 -16.65006 -16.43094 -15.47743 -15.40245 -15.19065 -14.87257 -14.27392 -13.94568 -13.88279 -13.75142 -13.51335 -13.37415 -13.06273 -12.55057 -12.48437 -12.44649 -12.30335 -12.16651 -11.96105 -11.70962 -11.36655 -11.18210 -11.07048 -11.00286 -10.82047 -10.77098 -10.67106 -9.88716 -9.75530 -9.38183 -9.27676 -8.96099 -8.73279 -8.60744 -7.99959 -6.06393 -4.04652 1.06259 1.27287 1.94131 2.49009 3.28517 3.35757 3.38171 3.59293 3.64653 4.23284 4.41436 4.50545 4.65043 4.68225 4.72429 4.84639 4.87392 4.90015 4.93627 4.95492 5.03403 5.13387 5.25643 5.27830 5.30026 5.36725 5.39208 5.52175 5.74390 5.78845 5.92608 5.97098 6.06576 6.11010 6.24482 6.30962 6.37384 6.41968 6.45669 6.50382 6.80695 6.84581 7.27773 7.36582 7.48013 7.73980 7.80857 8.58966 9.00972 9.54713 11.06808 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002937 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.887931 B = 9530.732373 C =10584.045249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.457 3.543 4 O -0.490 6.490 5 C -0.075 4.075 6 C -0.080 4.080 7 C -0.105 4.105 8 C -0.123 4.123 9 C -0.115 4.115 10 C -0.093 4.093 11 C -0.065 4.065 12 C 0.099 3.901 13 O -0.372 6.372 14 C 0.052 3.948 15 C 0.008 3.992 16 N -0.466 5.466 17 C 0.132 3.868 18 C -0.512 4.512 19 H 0.079 0.921 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.001 4.001 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.032 0.968 42 H -0.007 1.007 43 H 0.264 0.736 44 H 0.085 0.915 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.954 -10.803 -24.288 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.298 3.702 4 O -0.376 6.376 5 C -0.113 4.113 6 C -0.080 4.080 7 C -0.123 4.123 8 C -0.141 4.141 9 C -0.133 4.133 10 C -0.111 4.111 11 C -0.065 4.065 12 C 0.023 3.977 13 O -0.290 6.290 14 C -0.006 4.006 15 C -0.121 4.121 16 N -0.190 5.190 17 C 0.005 3.995 18 C -0.551 4.551 19 H 0.097 0.903 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.703 3.297 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.130 4.130 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.154 0.846 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.050 0.950 42 H 0.011 0.989 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.540 -10.697 -23.689 27.688 hybrid contribution 0.161 1.439 -0.205 1.462 sum 9.701 -9.258 -23.894 27.400 Atomic orbital electron populations 1.23298 0.75969 1.03778 1.02841 1.86486 1.23728 1.33382 1.84327 1.23651 0.91856 0.81565 0.73091 1.90744 1.66907 1.36175 1.43770 1.20307 0.88231 0.95914 1.06802 1.18904 1.02171 0.93756 0.93202 1.20862 0.99662 0.95129 0.96638 1.21091 1.00447 0.94411 0.98168 1.21239 0.99570 0.99959 0.92500 1.21066 0.97241 0.93944 0.98806 1.19529 0.99035 0.94870 0.93037 1.21257 0.99835 0.91684 0.84946 1.87932 1.89269 1.37560 1.14210 1.24425 0.97249 0.97792 0.81119 1.24248 0.96302 1.01410 0.90175 1.68486 1.01169 1.36717 1.12608 1.20658 0.98854 0.86156 0.93839 1.20955 0.96524 1.05350 1.32233 0.90328 1.24912 0.94978 0.98124 0.95272 1.69894 1.16774 1.31517 1.35629 0.86838 0.81778 0.83134 0.77902 1.20245 1.21063 1.19111 1.24197 0.96017 1.00543 0.92215 0.87996 0.91542 0.91904 0.86574 0.86727 0.86059 0.86022 0.85881 0.84583 0.92159 0.91957 0.89168 0.90558 0.90001 0.94997 0.98910 0.92616 0.89697 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.43 10.57 -39.26 -0.41 -3.84 16 3 C 0.46 4.86 7.60 36.00 0.27 5.13 16 4 O -0.49 -7.02 15.78 -18.75 -0.30 -7.32 16 5 C -0.08 -0.59 5.45 -29.04 -0.16 -0.75 16 6 C -0.08 -0.83 4.37 -104.62 -0.46 -1.29 16 7 C -0.10 -1.00 9.68 -39.58 -0.38 -1.38 16 8 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 9 C -0.11 -1.23 10.05 -39.58 -0.40 -1.63 16 10 C -0.09 -1.17 9.38 -39.58 -0.37 -1.54 16 11 C -0.06 -0.80 5.88 -104.62 -0.62 -1.41 16 12 C 0.10 1.23 4.96 36.01 0.18 1.41 16 13 O -0.37 -5.63 8.84 -35.23 -0.31 -5.94 16 14 C 0.05 0.82 4.48 -25.80 -0.12 0.71 16 15 C 0.01 0.15 7.32 -2.63 -0.02 0.13 16 16 N -0.47 -10.05 6.25 -239.78 -1.50 -11.55 16 17 C 0.13 3.31 3.65 -4.98 -0.02 3.29 16 18 C -0.51 -14.97 9.40 -34.44 -0.32 -15.30 16 19 H 0.08 2.50 8.04 -52.49 -0.42 2.08 16 20 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 21 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 22 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 26 C 0.00 -0.01 7.81 -2.76 -0.02 -0.03 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.47 8.13 -51.93 -0.42 0.04 16 30 H 0.12 0.58 8.05 -51.93 -0.42 0.16 16 31 H 0.11 0.72 6.84 -51.93 -0.36 0.36 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.83 7.01 -52.49 -0.37 1.46 16 36 H 0.06 0.79 7.78 -51.93 -0.40 0.38 16 37 H 0.06 0.62 7.51 -51.94 -0.39 0.23 16 38 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 39 H 0.08 1.62 7.79 -51.93 -0.40 1.21 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.03 0.81 7.20 -51.93 -0.37 0.43 16 42 H -0.01 -0.17 7.13 -51.92 -0.37 -0.54 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.23 7.80 -51.93 -0.40 0.83 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -34.96 375.92 -9.48 -44.44 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.87 Total: -0.48 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.86 Total: -10.96 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.73 Total: -38.79 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -1.02 Total: -17.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.96 -9.48 -44.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224236948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.599 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds