Wall clock time and date at job start Tue Mar 31 2020 12:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99801 * 2 1 4 4 O 1.20829 * 119.99799 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99944 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47338 * 180.02562 * 5 3 2 7 7 C 1.38260 * 120.00075 * 265.02639 * 6 5 3 8 8 C 1.38211 * 120.00008 * 179.97438 * 7 6 5 9 9 C 1.38258 * 120.00175 * 359.79887 * 8 7 6 10 10 C 1.38211 * 119.99774 * 0.43545 * 9 8 7 11 11 C 1.38215 * 120.00244 * 84.99485 * 6 5 3 12 12 C 1.50702 * 119.99534 * 0.02562 * 11 6 5 13 13 O 1.42907 * 109.46586 * 179.97438 * 12 11 6 14 14 C 1.42902 * 113.99827 * 179.97438 * 13 12 11 15 15 C 1.53932 * 113.73494 * 248.76942 * 14 13 12 16 16 N 1.48191 * 86.09751 * 221.95639 * 15 14 13 17 17 C 1.46907 * 111.07132 * 137.52340 * 16 15 14 18 18 C 1.50693 * 109.47358 * 70.56268 * 17 16 15 19 19 H 1.07995 * 120.00271 * 0.02562 * 18 17 16 20 20 C 1.37876 * 119.99905 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00219 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00012 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47241 * 90.00416 * 22 20 18 24 24 H 1.48501 * 109.46905 * 210.00441 * 22 20 18 25 25 H 1.48498 * 109.46938 * 330.00013 * 22 20 18 26 26 C 1.47955 * 90.80274 * 24.59732 * 16 15 14 27 27 H 1.09003 * 109.46624 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47078 * 299.99592 * 1 2 3 29 29 H 1.08998 * 109.47529 * 60.00479 * 1 2 3 30 30 H 1.08998 * 109.47611 * 59.99716 * 5 3 2 31 31 H 1.09002 * 109.47197 * 299.99867 * 5 3 2 32 32 H 1.08001 * 119.99600 * 359.97438 * 7 6 5 33 33 H 1.08003 * 119.99444 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.99848 * 180.23501 * 9 8 7 35 35 H 1.08002 * 120.00200 * 179.80765 * 10 9 8 36 36 H 1.08998 * 109.46697 * 299.97069 * 12 11 6 37 37 H 1.08988 * 109.47542 * 59.97638 * 12 11 6 38 38 H 1.09004 * 112.93464 * 20.33553 * 14 13 12 39 39 H 1.08999 * 113.76072 * 336.23124 * 15 14 13 40 40 H 1.09003 * 113.76372 * 107.60328 * 15 14 13 41 41 H 1.09000 * 109.46861 * 190.56936 * 17 16 15 42 42 H 1.09009 * 109.46414 * 310.56084 * 17 16 15 43 43 H 0.97001 * 120.00508 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.76229 * 221.08736 * 26 16 15 45 45 H 1.09004 * 113.85763 * 89.73200 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 -0.0006 6 6 3.9935 2.7201 0.0002 7 6 4.2886 3.3544 -1.1924 8 6 4.6800 4.6799 -1.1917 9 6 4.7724 5.3728 0.0011 10 6 4.4821 4.7374 1.1937 11 6 4.0899 3.4117 1.1930 12 6 3.7681 2.7203 2.4928 13 8 3.9415 3.6370 3.5754 14 6 3.6598 3.0787 4.8604 15 6 2.3955 3.6552 5.5227 16 7 3.1838 3.6731 6.7774 17 6 2.9586 4.9175 7.5251 18 6 1.5632 4.9161 8.0940 19 1 0.9092 4.0748 7.9183 20 6 1.1214 5.9889 8.8390 21 7 -0.0965 5.9879 9.3351 22 14 2.2528 7.4437 9.1436 23 1 2.0774 8.4428 8.0590 24 1 1.9177 8.0665 10.4493 25 1 3.6628 6.9783 9.1646 26 6 4.4460 3.7378 6.0081 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9563 0.7807 0.8892 32 1 4.2132 2.8140 -2.1244 33 1 4.9100 5.1754 -2.1234 34 1 5.0746 6.4097 0.0012 35 1 4.5574 5.2778 2.1258 36 1 2.7354 2.3723 2.4732 37 1 4.4358 1.8694 2.6268 38 1 3.7018 1.9895 4.8688 39 1 2.1234 4.6468 5.1610 40 1 1.5544 2.9622 5.5411 41 1 3.6821 4.9895 8.3371 42 1 3.0774 5.7698 6.8559 43 1 -0.4073 6.7425 9.8596 44 1 5.2400 3.1107 6.4133 45 1 4.7765 4.7529 5.7877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224236948.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:54 Heat of formation + Delta-G solvation = -88.023843 kcal Electronic energy + Delta-G solvation = -26369.965178 eV Core-core repulsion = 22546.083885 eV Total energy + Delta-G solvation = -3823.881293 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72752 -40.99053 -40.21317 -37.83756 -37.51575 -34.96725 -34.23502 -32.66630 -31.39454 -29.84566 -28.00504 -27.38839 -27.14364 -26.46009 -23.51344 -22.96778 -22.47771 -21.42113 -20.80101 -19.05864 -18.70928 -18.24504 -17.89592 -17.53719 -17.32892 -16.72460 -16.63499 -16.31274 -15.97695 -15.85053 -15.16777 -14.97617 -14.76923 -14.55143 -14.45393 -14.20287 -14.06355 -13.83887 -13.59415 -13.44418 -13.11055 -13.07393 -12.93775 -12.76747 -12.65680 -12.34890 -11.97861 -11.83977 -11.82591 -11.78292 -11.62360 -11.48103 -11.40443 -10.86119 -10.64124 -9.74889 -9.72525 -9.55633 -8.34911 -6.39913 0.28702 0.47017 1.16141 1.30695 1.32361 1.43796 1.81604 2.29568 2.46493 2.84900 2.98009 3.18656 3.47768 3.53654 3.76725 3.94021 3.98750 4.01864 4.13368 4.25446 4.27992 4.29250 4.31112 4.34172 4.40211 4.46210 4.55447 4.62579 4.63523 4.66894 4.70969 4.77107 4.79162 4.82254 4.96578 5.03631 5.13356 5.34026 5.38264 5.50416 5.58454 5.61688 5.67123 5.92197 6.07106 6.22865 6.44115 6.65175 6.71187 7.24005 8.81923 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.002937 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.887931 B = 9530.732373 C =10584.045249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.458 3.542 4 O -0.536 6.536 5 C -0.073 4.073 6 C -0.085 4.085 7 C -0.107 4.107 8 C -0.125 4.125 9 C -0.125 4.125 10 C -0.120 4.120 11 C -0.085 4.085 12 C 0.097 3.903 13 O -0.383 6.383 14 C 0.079 3.921 15 C -0.004 4.004 16 N -0.486 5.486 17 C 0.143 3.857 18 C -0.524 4.524 19 H 0.033 0.967 20 C 0.008 3.992 21 N -0.946 5.946 22 Si 0.950 3.050 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.247 1.247 26 C 0.003 3.997 27 H 0.133 0.867 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.136 0.864 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.035 0.965 42 H -0.007 1.007 43 H 0.269 0.731 44 H 0.115 0.885 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.619 -11.690 -26.239 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.302 3.698 4 O -0.425 6.425 5 C -0.109 4.109 6 C -0.085 4.085 7 C -0.125 4.125 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.138 4.138 11 C -0.086 4.086 12 C 0.021 3.979 13 O -0.301 6.301 14 C 0.020 3.980 15 C -0.133 4.133 16 N -0.210 5.210 17 C 0.015 3.985 18 C -0.563 4.563 19 H 0.052 0.948 20 C -0.190 4.190 21 N -0.586 5.586 22 Si 0.773 3.227 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.171 1.171 26 C -0.126 4.126 27 H 0.151 0.849 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.152 0.848 32 H 0.169 0.831 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.011 0.989 43 H 0.078 0.922 44 H 0.133 0.867 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.223 -11.621 -25.658 30.705 hybrid contribution -0.769 1.617 0.297 1.815 sum 11.454 -10.004 -25.361 29.571 Atomic orbital electron populations 1.23500 0.75202 1.05619 1.02161 1.86490 1.24563 1.32807 1.83855 1.24226 0.92892 0.81106 0.71584 1.90734 1.68086 1.37602 1.46119 1.20469 0.86146 0.94819 1.09494 1.19167 1.01541 0.95038 0.92735 1.21297 0.98405 0.95294 0.97517 1.21460 0.99476 0.94707 0.98664 1.21458 0.99580 1.00779 0.92471 1.21072 0.99231 0.94578 0.98902 1.19661 1.00150 0.95034 0.93715 1.21433 1.00008 0.92161 0.84266 1.87929 1.88887 1.38859 1.14443 1.24126 0.93607 0.98904 0.81317 1.24263 0.98066 1.00420 0.90593 1.68386 1.03984 1.34767 1.13830 1.20421 0.96038 0.87930 0.94137 1.21187 0.98234 1.04151 1.32686 0.94820 1.25904 0.96698 1.01544 0.94809 1.70046 1.19002 1.32903 1.36685 0.85674 0.80174 0.78755 0.78140 1.19371 1.20166 1.17061 1.24281 0.94992 1.01314 0.92007 0.84909 0.92952 0.91939 0.82942 0.84792 0.83149 0.83397 0.84632 0.86505 0.93241 0.88827 0.86201 0.93005 0.90773 0.94730 0.98883 0.92248 0.86713 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.36 -6.21 10.57 -51.43 -0.54 -6.76 16 3 C 0.46 9.07 7.60 71.23 0.54 9.61 16 4 O -0.54 -15.30 15.78 21.95 0.35 -14.95 16 5 C -0.07 -0.93 5.45 29.10 0.16 -0.77 16 6 C -0.08 -1.58 4.37 -19.86 -0.09 -1.67 16 7 C -0.11 -1.75 9.68 22.27 0.22 -1.53 16 8 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 9 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 10 C -0.12 -3.05 9.38 22.27 0.21 -2.84 16 11 C -0.09 -2.03 5.88 -19.86 -0.12 -2.15 16 12 C 0.10 2.30 4.96 71.24 0.35 2.65 16 13 O -0.38 -11.36 8.84 -148.98 -1.32 -12.68 16 14 C 0.08 2.39 4.48 31.24 0.14 2.53 16 15 C 0.00 -0.16 7.32 86.36 0.63 0.47 16 16 N -0.49 -21.01 6.25 -915.76 -5.72 -26.73 16 17 C 0.14 7.18 3.65 85.55 0.31 7.49 16 18 C -0.52 -31.76 9.40 25.60 0.24 -31.52 16 19 H 0.03 2.27 8.04 -2.91 -0.02 2.25 16 20 C 0.01 0.49 5.47 84.65 0.46 0.95 16 21 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 22 Si 0.95 45.36 27.47 68.60 1.88 47.25 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 26 C 0.00 0.09 7.81 86.41 0.67 0.76 16 27 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 29 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.15 0.84 8.05 -2.39 -0.02 0.82 16 31 H 0.13 1.21 6.84 -2.39 -0.02 1.19 16 32 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 34 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.12 3.30 7.01 -2.91 -0.02 3.28 16 36 H 0.05 1.27 7.78 -2.39 -0.02 1.25 16 37 H 0.09 1.59 7.51 -2.39 -0.02 1.57 16 38 H 0.12 2.96 7.89 -2.39 -0.02 2.94 16 39 H 0.05 2.32 7.79 -2.39 -0.02 2.30 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.03 1.72 7.20 -2.39 -0.02 1.70 16 42 H -0.01 -0.33 7.13 -2.38 -0.02 -0.34 16 43 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 44 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.07 2.29 7.80 -2.38 -0.02 2.27 16 Total: -1.00 -79.66 375.92 1.25 -78.42 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.92 Total: 14.62 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 5.38 Total: -18.70 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -5.42 Total: -87.20 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.51 Total: -34.39 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.25 kcal Total: -79.66 1.25 -78.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224236948.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.605 kcal (2) G-P(sol) polarization free energy of solvation -79.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds