Wall clock time and date at job start Tue Mar 31 2020 12:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99895 * 2 1 4 4 O 1.20823 * 120.00022 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99748 * 180.02562 * 3 2 1 6 6 C 1.50698 * 109.46813 * 180.02562 * 5 3 2 7 7 C 1.38259 * 119.99841 * 264.97215 * 6 5 3 8 8 C 1.38213 * 119.99988 * 179.97438 * 7 6 5 9 9 C 1.38252 * 120.00258 * 359.96294 * 8 7 6 10 10 C 1.38221 * 119.99758 * 359.85186 * 9 8 7 11 11 C 1.38216 * 120.00305 * 84.99942 * 6 5 3 12 12 C 1.50703 * 119.99948 * 359.97438 * 11 6 5 13 13 O 1.42899 * 109.47184 * 180.02562 * 12 11 6 14 14 C 1.42893 * 114.00135 * 180.02562 * 13 12 11 15 15 H 1.09009 * 110.63944 * 328.31148 * 14 13 12 16 16 C 1.55154 * 110.72052 * 204.97568 * 14 13 12 17 17 C 1.55125 * 101.48572 * 205.96682 * 16 14 13 18 18 N 1.47423 * 104.72395 * 37.29433 * 17 16 14 19 19 C 1.36938 * 125.64840 * 155.81746 * 18 17 16 20 20 H 1.08002 * 119.99798 * 193.30965 * 19 18 17 21 21 C 1.38805 * 120.00326 * 13.30689 * 19 18 17 22 22 N 1.31619 * 119.99643 * 27.28488 * 21 19 18 23 23 Si 1.86803 * 120.00275 * 207.28323 * 21 19 18 24 24 H 1.48496 * 109.47008 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.46883 * 240.00007 * 23 21 19 26 26 H 1.48496 * 109.47035 * 120.00305 * 23 21 19 27 27 C 1.47022 * 108.69958 * 335.55457 * 18 17 16 28 28 H 1.09008 * 109.47312 * 59.99568 * 1 2 3 29 29 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47152 * 299.99812 * 1 2 3 31 31 H 1.08989 * 109.47249 * 59.99827 * 5 3 2 32 32 H 1.09001 * 109.46881 * 300.00098 * 5 3 2 33 33 H 1.07994 * 119.99893 * 359.97438 * 7 6 5 34 34 H 1.07995 * 120.00141 * 179.97438 * 8 7 6 35 35 H 1.08000 * 120.00659 * 180.02562 * 9 8 7 36 36 H 1.07999 * 119.99685 * 180.21227 * 10 9 8 37 37 H 1.09000 * 109.47157 * 59.99905 * 12 11 6 38 38 H 1.09002 * 109.46723 * 300.00043 * 12 11 6 39 39 H 1.09001 * 111.00439 * 324.20428 * 16 14 13 40 40 H 1.08997 * 111.00546 * 88.02048 * 16 14 13 41 41 H 1.09002 * 110.50230 * 278.45118 * 17 16 14 42 42 H 1.09005 * 110.34880 * 156.05846 * 17 16 14 43 43 H 0.96994 * 120.00297 * 5.84617 * 22 21 19 44 44 H 1.08999 * 109.88184 * 120.70859 * 27 18 17 45 45 H 1.09000 * 109.87675 * 241.70882 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7200 0.0002 7 6 4.2897 3.3539 -1.1923 8 6 4.6810 4.6795 -1.1917 9 6 4.7756 5.3718 0.0012 10 6 4.4759 4.7392 1.1931 11 6 4.0900 3.4116 1.1930 12 6 3.7672 2.7206 2.4928 13 8 3.9397 3.6374 3.5753 14 6 3.6582 3.0792 4.8602 15 1 2.8797 2.3197 4.7870 16 6 3.2539 4.1904 5.8648 17 6 3.6585 3.5465 7.2168 18 7 4.9052 2.8156 6.9256 19 6 5.8707 2.4883 7.8399 20 1 6.8386 2.1464 7.5042 21 6 5.6053 2.5958 9.1981 22 7 4.3706 2.4785 9.6387 23 14 7.0006 2.9070 10.4006 24 1 8.2831 2.9982 9.6578 25 1 7.0722 1.7892 11.3756 26 1 6.7554 4.1802 11.1244 27 6 4.9373 2.4909 5.4920 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7809 -0.8907 32 1 3.9564 0.7805 0.8892 33 1 4.2152 2.8133 -2.1242 34 1 4.9127 5.1746 -2.1231 35 1 5.0810 6.4078 0.0018 36 1 4.5465 5.2810 2.1246 37 1 4.4347 1.8694 2.6273 38 1 2.7344 2.3729 2.4727 39 1 3.8152 5.1064 5.6809 40 1 2.1808 4.3782 5.8285 41 1 2.8858 2.8576 7.5581 42 1 3.8373 4.3182 7.9657 43 1 3.6588 2.2332 9.0273 44 1 5.8180 2.9373 5.0304 45 1 4.9564 1.4094 5.3574 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224237454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:13 Heat of formation + Delta-G solvation = -100.234341 kcal Electronic energy + Delta-G solvation = -26668.453721 eV Core-core repulsion = 22844.042941 eV Total energy + Delta-G solvation = -3824.410780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74808 -40.55423 -39.80783 -37.75939 -37.53369 -34.56866 -34.18225 -32.54029 -31.04799 -29.87727 -29.03093 -27.90659 -27.06866 -26.15340 -23.41258 -22.60949 -22.14449 -21.96976 -21.28091 -19.68350 -18.74472 -18.22083 -17.90389 -17.57458 -17.28109 -16.74081 -16.38920 -16.02417 -15.86906 -15.71566 -15.25759 -15.12698 -14.86911 -14.61277 -14.46803 -14.12879 -14.00321 -13.70304 -13.41114 -13.17069 -13.10140 -12.95145 -12.68712 -12.65127 -12.53982 -12.41601 -12.00786 -11.88353 -11.85647 -11.80845 -11.64529 -11.63587 -11.60856 -10.82321 -10.55290 -9.76105 -9.58508 -9.09400 -8.37407 -5.36893 0.27125 0.45609 1.12509 1.56759 1.65435 1.78993 1.82044 2.38775 2.63860 2.83334 3.15063 3.48513 3.50118 3.62132 3.76586 3.84629 3.93314 3.95946 4.00769 4.11074 4.24654 4.27090 4.28327 4.29801 4.34917 4.35877 4.49296 4.51722 4.64163 4.68820 4.73783 4.78997 4.85280 4.87230 4.99826 5.01103 5.12219 5.19977 5.34683 5.48926 5.56847 5.60014 5.60628 6.05575 6.17054 6.26952 6.68018 6.84449 7.65247 8.21556 8.96207 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.002908 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.810236 B = 9624.985445 C =10673.566106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.461 3.539 4 O -0.532 6.532 5 C -0.076 4.076 6 C -0.085 4.085 7 C -0.107 4.107 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.118 4.118 11 C -0.086 4.086 12 C 0.098 3.902 13 O -0.376 6.376 14 C 0.093 3.907 15 H 0.081 0.919 16 C -0.115 4.115 17 C 0.148 3.852 18 N -0.626 5.626 19 C -0.350 4.350 20 H 0.061 0.939 21 C -0.077 4.077 22 N -0.947 5.947 23 Si 1.122 2.878 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.286 1.286 27 C 0.116 3.884 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.055 0.945 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.015 0.985 42 H 0.028 0.972 43 H 0.258 0.742 44 H 0.029 0.971 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.307 -2.083 -26.534 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.421 6.421 5 C -0.113 4.113 6 C -0.085 4.085 7 C -0.125 4.125 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.136 4.136 11 C -0.086 4.086 12 C 0.022 3.978 13 O -0.295 6.295 14 C 0.035 3.965 15 H 0.099 0.901 16 C -0.153 4.153 17 C 0.023 3.977 18 N -0.354 5.354 19 C -0.478 4.478 20 H 0.078 0.922 21 C -0.273 4.273 22 N -0.590 5.590 23 Si 0.946 3.054 24 H -0.199 1.199 25 H -0.214 1.214 26 H -0.212 1.212 27 C -0.010 4.010 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.144 0.856 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.038 -1.354 -24.948 25.309 hybrid contribution -0.823 -0.542 -1.046 1.437 sum -4.861 -1.896 -25.994 26.512 Atomic orbital electron populations 1.23521 0.75002 1.05634 1.02343 1.86502 1.24797 1.32805 1.83832 1.24073 0.92622 0.81174 0.71630 1.90705 1.67918 1.37390 1.46081 1.20460 0.86687 0.95009 1.09139 1.19149 1.01678 0.94835 0.92818 1.21289 0.98436 0.95368 0.97361 1.21477 0.99247 0.94593 0.98766 1.21471 0.99347 1.00948 0.92294 1.21080 0.99067 0.94411 0.99068 1.19601 1.00589 0.95119 0.93293 1.21369 0.99828 0.92014 0.84550 1.87878 1.89866 1.37869 1.13896 1.22930 0.95189 0.95859 0.82500 0.90078 1.22829 1.02024 0.97755 0.92692 1.21511 0.87712 0.93367 0.95127 1.44745 1.21733 1.64668 1.04276 1.20084 0.92580 1.46003 0.89108 0.92155 1.27190 1.03274 0.99380 0.97435 1.70840 1.01998 1.48586 1.37587 0.82782 0.72266 0.76795 0.73569 1.19918 1.21413 1.21210 1.21850 0.97258 0.96779 0.85092 0.91709 0.85068 0.92665 0.82994 0.85625 0.83064 0.83131 0.84291 0.86393 0.90834 0.92497 0.90713 0.88433 0.96727 0.95364 0.93161 0.95313 0.95971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.49 10.57 -51.43 -0.54 -7.03 16 3 C 0.46 9.42 7.60 71.24 0.54 9.97 16 4 O -0.53 -14.69 15.78 21.97 0.35 -14.35 16 5 C -0.08 -1.16 5.45 29.10 0.16 -1.00 16 6 C -0.08 -1.74 4.37 -19.87 -0.09 -1.83 16 7 C -0.11 -1.84 9.68 22.27 0.22 -1.63 16 8 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 9 C -0.12 -2.59 10.05 22.27 0.22 -2.37 16 10 C -0.12 -3.15 9.38 22.27 0.21 -2.94 16 11 C -0.09 -2.23 5.88 -19.86 -0.12 -2.35 16 12 C 0.10 2.70 4.98 71.24 0.35 3.06 16 13 O -0.38 -12.59 8.55 -148.98 -1.27 -13.87 16 14 C 0.09 3.39 3.40 31.78 0.11 3.50 16 15 H 0.08 2.69 7.88 -2.38 -0.02 2.67 16 16 C -0.11 -4.36 6.82 32.06 0.22 -4.14 16 17 C 0.15 7.26 5.22 86.93 0.45 7.71 16 18 N -0.63 -33.63 3.33 -691.57 -2.30 -35.93 16 19 C -0.35 -20.68 10.05 84.03 0.84 -19.83 16 20 H 0.06 3.55 7.96 -2.91 -0.02 3.53 16 21 C -0.08 -4.55 5.09 84.86 0.43 -4.12 16 22 N -0.95 -59.19 12.82 21.65 0.28 -58.91 16 23 Si 1.12 52.47 30.00 68.60 2.06 54.53 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 27 C 0.12 5.12 7.01 86.73 0.61 5.73 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 31 H 0.15 1.21 8.05 -2.39 -0.02 1.19 16 32 H 0.13 1.68 6.84 -2.39 -0.02 1.67 16 33 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 36 H 0.12 3.46 7.01 -2.91 -0.02 3.44 16 37 H 0.07 1.83 7.51 -2.39 -0.02 1.81 16 38 H 0.06 1.55 7.75 -2.39 -0.02 1.53 16 39 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.02 0.76 6.84 -2.39 -0.02 0.75 16 42 H 0.03 1.52 7.73 -2.38 -0.02 1.50 16 43 H 0.26 16.23 5.83 -92.71 -0.54 15.69 16 44 H 0.03 1.31 8.06 -2.39 -0.02 1.29 16 45 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -77.24 372.41 5.35 -71.89 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.20 Total: 14.25 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 5.59 Total: -10.58 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -2.02 Total: -94.84 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.47 Total: -35.24 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 2.06 Total: 54.53 kcal Total: -77.24 5.35 -71.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224237454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.349 kcal (2) G-P(sol) polarization free energy of solvation -77.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds