Wall clock time and date at job start Tue Mar 31 2020 12:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34715 * 116.99730 * 2 1 4 4 O 1.21469 * 120.00331 * 359.97438 * 3 2 1 5 5 C 1.47731 * 119.99900 * 179.97438 * 3 2 1 6 6 C 1.39635 * 120.14937 * 0.24881 * 5 3 2 7 7 C 1.37938 * 119.84859 * 180.27258 * 6 5 3 8 8 C 1.38365 * 120.14930 * 359.47345 * 7 6 5 9 9 C 1.50702 * 119.85041 * 180.25230 * 8 7 6 10 10 C 1.53002 * 109.47034 * 90.00559 * 9 8 7 11 11 O 1.42900 * 109.47098 * 180.02562 * 10 9 8 12 12 C 1.42900 * 113.99872 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.88625 * 26.12539 * 12 11 10 14 14 C 1.55161 * 111.00093 * 150.00113 * 12 11 10 15 15 C 1.54315 * 102.94376 * 153.57987 * 14 12 11 16 16 N 1.47029 * 107.27015 * 337.80824 * 15 14 12 17 17 C 1.36942 * 125.64963 * 178.89581 * 16 15 14 18 18 H 1.07996 * 120.00099 * 174.87970 * 17 16 15 19 19 C 1.38810 * 119.99886 * 354.88342 * 17 16 15 20 20 N 1.31625 * 119.99880 * 7.06037 * 19 17 16 21 21 Si 1.86796 * 119.99862 * 187.06767 * 19 17 16 22 22 H 1.48497 * 109.47562 * 94.98425 * 21 19 17 23 23 H 1.48506 * 109.46925 * 214.98540 * 21 19 17 24 24 H 1.48500 * 109.47229 * 334.97802 * 21 19 17 25 25 C 1.47427 * 108.70234 * 358.93768 * 16 15 14 26 26 C 1.38370 * 120.30360 * 0.27764 * 8 7 6 27 27 C 1.37947 * 120.14728 * 359.97438 * 26 8 7 28 28 H 1.09003 * 109.47661 * 300.00430 * 1 2 3 29 29 H 1.08999 * 109.47253 * 60.00255 * 1 2 3 30 30 H 1.09003 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.07722 * 0.03114 * 6 5 3 32 32 H 1.07994 * 119.92878 * 179.75163 * 7 6 5 33 33 H 1.09003 * 109.47265 * 210.00403 * 9 8 7 34 34 H 1.09001 * 109.47005 * 330.00586 * 9 8 7 35 35 H 1.08998 * 109.46526 * 299.99859 * 10 9 8 36 36 H 1.08992 * 109.47321 * 59.99578 * 10 9 8 37 37 H 1.08999 * 110.72021 * 271.94203 * 14 12 11 38 38 H 1.08999 * 110.72242 * 35.21610 * 14 12 11 39 39 H 1.08996 * 109.88740 * 97.22201 * 15 14 12 40 40 H 1.09003 * 109.88788 * 218.39191 * 15 14 12 41 41 H 0.97002 * 119.99628 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.36756 * 265.29239 * 25 16 15 43 43 H 1.08997 * 110.36660 * 142.96637 * 25 16 15 44 44 H 1.08001 * 119.92334 * 179.97438 * 26 8 7 45 45 H 1.08008 * 120.07230 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3024 0.1087 -0.0041 7 6 5.6794 0.1881 0.0021 8 6 6.3043 1.4226 0.0020 9 6 7.8093 1.5015 0.0031 10 6 8.3197 1.5277 -1.4390 11 8 9.7467 1.6019 -1.4380 12 6 10.3281 1.6313 -2.7430 13 1 9.6290 2.0435 -3.4707 14 6 11.6608 2.4258 -2.7403 15 6 12.4358 1.8049 -3.9215 16 7 11.8723 0.4678 -4.1586 17 6 12.2699 -0.4039 -5.1371 18 1 11.8495 -1.3978 -5.1782 19 6 13.2134 -0.0100 -6.0759 20 7 13.8278 1.1468 -5.9462 21 14 13.6109 -1.1215 -7.5236 22 1 12.7945 -0.7179 -8.6965 23 1 15.0526 -1.0009 -7.8590 24 1 13.3021 -2.5293 -7.1663 25 6 10.8075 0.2213 -3.1692 26 6 5.5538 2.5851 0.0015 27 6 4.1759 2.5201 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.8159 -0.8556 -0.0087 32 1 6.2712 -0.7153 0.0026 33 1 8.1252 2.4095 0.5169 34 1 8.2183 0.6319 0.5176 35 1 8.0038 0.6197 -1.9526 36 1 7.9106 2.3971 -1.9535 37 1 11.4780 3.4863 -2.9140 38 1 12.1983 2.2743 -1.8042 39 1 12.3125 2.4222 -4.8113 40 1 13.4930 1.7222 -3.6688 41 1 14.4868 1.4223 -6.6025 42 1 11.2053 -0.3197 -2.3106 43 1 9.9888 -0.3363 -3.6239 44 1 6.0479 3.5454 0.0018 45 1 3.5912 3.4282 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224434644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:38 Heat of formation + Delta-G solvation = -83.235823 kcal Electronic energy + Delta-G solvation = -25319.222586 eV Core-core repulsion = 21495.548917 eV Total energy + Delta-G solvation = -3823.673669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92872 -39.45940 -38.32629 -36.81979 -36.08304 -33.75486 -32.13001 -31.41273 -29.81023 -29.04424 -27.87075 -26.95863 -24.69788 -24.06401 -23.06875 -22.25598 -20.89449 -20.28183 -20.04219 -18.42061 -17.49270 -17.00543 -16.73630 -16.61914 -15.84268 -15.54999 -15.06355 -14.77319 -14.70457 -14.42832 -14.07955 -13.87172 -13.80304 -13.65889 -13.14868 -12.85843 -12.58912 -12.50475 -12.26459 -11.94500 -11.88556 -11.70606 -11.43562 -11.22087 -11.20298 -10.94705 -10.89959 -10.85107 -10.68697 -10.22216 -10.09096 -9.79463 -9.72379 -9.37783 -9.19041 -9.07623 -8.58034 -6.83925 -5.73005 -3.05811 0.29469 1.00288 2.15089 2.28294 3.35628 3.40063 3.45079 3.47295 3.82800 4.29437 4.44349 4.50384 4.58292 4.69387 4.69700 4.77209 4.87054 4.99269 5.09073 5.13986 5.16109 5.35125 5.40516 5.47103 5.49250 5.54585 5.61361 5.73945 5.76650 5.79755 5.86886 5.88776 5.90217 6.03607 6.24296 6.27166 6.47207 6.48563 6.53746 6.68236 6.71256 7.34040 7.54853 7.59939 7.61802 7.82109 8.24914 9.20683 9.81098 10.47227 11.39090 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020888 B = 0.001965 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.144072 B =14244.839570 C =15077.220145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.510 3.490 4 O -0.508 6.508 5 C -0.137 4.137 6 C -0.058 4.058 7 C -0.128 4.128 8 C -0.038 4.038 9 C -0.086 4.086 10 C 0.069 3.931 11 O -0.380 6.380 12 C 0.073 3.927 13 H 0.067 0.933 14 C -0.139 4.139 15 C 0.177 3.823 16 N -0.604 5.604 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.920 5.920 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.120 3.880 26 C -0.127 4.127 27 C -0.051 4.051 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.253 0.747 42 H 0.027 0.973 43 H 0.037 0.963 44 H 0.135 0.865 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.641 0.638 14.831 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.397 6.397 5 C -0.138 4.138 6 C -0.077 4.077 7 C -0.145 4.145 8 C -0.038 4.038 9 C -0.124 4.124 10 C -0.008 4.008 11 O -0.298 6.298 12 C 0.015 3.985 13 H 0.085 0.915 14 C -0.178 4.178 15 C 0.052 3.948 16 N -0.332 5.332 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.006 4.006 26 C -0.145 4.145 27 C -0.070 4.070 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.122 0.878 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.153 0.847 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.611 0.926 14.826 27.054 hybrid contribution -0.179 -0.508 -1.061 1.190 sum -22.790 0.418 13.765 26.627 Atomic orbital electron populations 1.23301 0.75809 1.03898 1.02702 1.86545 1.23697 1.32637 1.84295 1.21272 0.89217 0.81428 0.72522 1.90833 1.66852 1.36049 1.46000 1.19077 0.88781 0.95223 1.10690 1.21462 0.93813 0.97910 0.94470 1.21156 0.94226 0.97893 1.01268 1.20147 0.95782 0.93210 0.94670 1.20607 0.89568 1.04796 0.97402 1.22360 0.82526 1.00445 0.95507 1.87846 1.18225 1.94855 1.28914 1.23428 0.94598 0.97747 0.82738 0.91521 1.23005 0.95095 0.98530 1.01144 1.21180 0.95331 0.85538 0.92707 1.44369 1.38505 1.15808 1.34549 1.19065 1.19483 0.94124 1.03040 0.90372 1.24842 0.99082 0.97390 0.99131 1.69977 1.29120 1.21383 1.36276 0.86099 0.77306 0.79586 0.82798 1.21609 1.21735 1.20607 1.21890 0.91806 0.94085 0.92866 1.21095 0.93041 0.98751 1.01569 1.21253 0.94574 0.96676 0.94459 0.91782 0.91726 0.87839 0.84354 0.84667 0.89637 0.89496 0.93164 0.93408 0.91908 0.91468 0.93236 0.93737 0.93707 0.95499 0.94470 0.84665 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.15 9.82 -40.53 -0.40 -3.55 16 3 C 0.51 5.38 7.90 34.61 0.27 5.66 16 4 O -0.51 -6.48 16.14 -19.24 -0.31 -6.79 16 5 C -0.14 -1.32 5.87 -104.98 -0.62 -1.94 16 6 C -0.06 -0.49 9.62 -39.17 -0.38 -0.87 16 7 C -0.13 -1.07 9.68 -39.64 -0.38 -1.45 16 8 C -0.04 -0.34 5.14 -104.53 -0.54 -0.87 16 9 C -0.09 -0.82 5.71 -27.88 -0.16 -0.98 16 10 C 0.07 0.84 5.76 37.16 0.21 1.05 16 11 O -0.38 -6.08 10.15 -35.23 -0.36 -6.44 16 12 C 0.07 1.34 3.54 -24.58 -0.09 1.25 16 13 H 0.07 1.19 7.83 -51.93 -0.41 0.78 16 14 C -0.14 -2.70 6.69 -24.90 -0.17 -2.87 16 15 C 0.18 4.36 5.38 -3.06 -0.02 4.35 16 16 N -0.60 -15.77 3.40 -170.08 -0.58 -16.35 16 17 C -0.23 -6.46 10.27 -15.06 -0.15 -6.61 16 18 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 19 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 20 N -0.92 -27.15 10.36 55.49 0.57 -26.57 16 21 Si 0.91 22.13 29.56 -169.99 -5.02 17.11 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.12 2.58 6.97 -2.53 -0.02 2.56 16 26 C -0.13 -1.08 9.68 -39.64 -0.38 -1.47 16 27 C -0.05 -0.47 9.60 -39.17 -0.38 -0.85 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.14 0.94 7.61 -52.49 -0.40 0.54 16 32 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 34 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 40 H 0.04 1.20 7.61 -51.93 -0.40 0.81 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 45 H 0.14 1.18 7.65 -52.48 -0.40 0.78 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -32.91 378.25 -9.23 -42.14 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.02 Total: -3.17 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.82 Total: -2.09 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.00 Total: -42.92 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -1.07 Total: -16.78 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.91 -9.23 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224434644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.097 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds