Wall clock time and date at job start Tue Mar 31 2020 12:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34710 * 116.99833 * 2 1 4 4 O 1.21473 * 120.00014 * 0.02562 * 3 2 1 5 5 C 1.47724 * 120.00002 * 180.02562 * 3 2 1 6 6 C 1.39634 * 120.14790 * 180.02562 * 5 3 2 7 7 C 1.37936 * 119.84502 * 180.02562 * 6 5 3 8 8 C 1.38374 * 120.15240 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.84767 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46748 * 90.00152 * 9 8 7 11 11 O 1.42906 * 109.46646 * 180.02562 * 10 9 8 12 12 C 1.42903 * 113.99676 * 180.02562 * 11 10 9 13 13 C 1.53514 * 114.17081 * 149.99722 * 12 11 10 14 14 N 1.47483 * 87.92777 * 87.61994 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 C 1.38366 * 120.30091 * 0.23384 * 8 7 6 26 26 C 1.37942 * 120.14887 * 359.48474 * 25 8 7 27 27 H 1.09002 * 109.47087 * 299.99227 * 1 2 3 28 28 H 1.08995 * 109.47698 * 60.00098 * 1 2 3 29 29 H 1.09002 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.07314 * 359.97438 * 6 5 3 31 31 H 1.08004 * 119.92473 * 179.97438 * 7 6 5 32 32 H 1.09000 * 109.47253 * 329.99936 * 9 8 7 33 33 H 1.08994 * 109.46969 * 209.99947 * 9 8 7 34 34 H 1.09000 * 109.47420 * 59.99886 * 10 9 8 35 35 H 1.08994 * 109.47218 * 299.99642 * 10 9 8 36 36 H 1.08997 * 113.25538 * 17.04389 * 12 11 10 37 37 H 1.09000 * 113.47331 * 332.85672 * 13 12 11 38 38 H 1.08997 * 113.47627 * 202.38796 * 13 12 11 39 39 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 40 40 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 42 42 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 43 43 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 44 44 H 1.07995 * 119.91938 * 179.72514 * 25 8 7 45 45 H 1.08006 * 120.07603 * 180.25881 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4019 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1759 2.5202 0.0000 7 6 5.5537 2.5851 -0.0011 8 6 6.3043 1.4227 -0.0033 9 6 7.8093 1.5016 -0.0050 10 6 8.3203 1.5268 1.4370 11 8 9.7473 1.6023 1.4353 12 6 10.3293 1.6308 2.7401 13 6 11.7282 1.0033 2.8183 14 7 12.2814 2.3221 2.4577 15 6 13.4816 2.6237 3.2492 16 6 14.1560 3.8505 2.6913 17 1 13.7353 4.3554 1.8342 18 6 15.3107 4.3278 3.2744 19 7 15.8232 3.7127 4.3178 20 14 16.1469 5.8480 2.5824 21 1 17.1324 5.4433 1.5478 22 1 15.1276 6.7397 1.9732 23 1 16.8457 6.5696 3.6762 24 6 11.0819 2.9289 3.0644 25 6 5.6794 0.1882 -0.0092 26 6 4.3023 0.1087 -0.0023 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.5911 3.4282 0.0004 31 1 6.0478 3.5455 -0.0011 32 1 8.1249 2.4100 -0.5183 33 1 8.2181 0.6325 -0.5202 34 1 8.0047 0.6185 1.9502 35 1 7.9115 2.3959 1.9522 36 1 9.6471 1.2994 3.5230 37 1 11.9034 0.2376 2.0626 38 1 12.0023 0.6770 3.8215 39 1 14.1688 1.7788 3.2035 40 1 13.1972 2.8050 4.2857 41 1 16.6357 4.0483 4.7278 42 1 11.1836 3.1164 4.1333 43 1 10.7095 3.7950 2.5173 44 1 6.2713 -0.7151 -0.0153 45 1 3.8158 -0.8556 -0.0028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224436913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:29 Heat of formation + Delta-G solvation = -67.296872 kcal Electronic energy + Delta-G solvation = -24891.990712 eV Core-core repulsion = 21069.008207 eV Total energy + Delta-G solvation = -3822.982504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.97419 -39.68523 -39.33913 -36.92048 -36.64235 -33.75347 -32.76479 -31.46224 -29.92880 -28.90244 -27.81183 -25.41315 -25.12044 -24.42645 -23.11541 -22.33084 -21.66551 -20.88398 -19.42214 -18.46394 -17.52510 -16.78214 -16.69872 -16.29886 -15.96348 -15.65234 -15.26053 -15.10101 -14.96340 -14.51564 -13.98220 -13.96394 -13.91625 -13.65636 -13.54762 -13.33140 -12.74743 -12.62132 -12.46427 -12.05920 -11.90748 -11.80809 -11.54458 -11.42645 -11.26294 -11.02682 -10.98902 -10.94523 -10.67691 -10.47128 -10.20420 -9.63908 -9.42808 -9.26765 -9.21394 -9.15680 -8.40719 -7.77941 -6.01632 -4.02300 0.24584 0.95324 2.10510 2.23673 3.29370 3.34005 3.39378 3.44292 3.64609 4.24007 4.39621 4.44867 4.53134 4.60489 4.65211 4.73096 4.77681 4.87083 4.91007 4.95860 5.05308 5.11582 5.19970 5.28569 5.29816 5.33912 5.41805 5.55590 5.68949 5.72553 5.78795 5.84709 5.94011 5.99032 5.99476 6.17675 6.19512 6.26772 6.41208 6.43199 6.70010 7.18586 7.29716 7.45091 7.69355 7.90183 8.14522 8.50129 9.05713 9.61719 11.09528 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.001692 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.787505 B =16540.488741 C =16971.101340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.507 6.507 5 C -0.136 4.136 6 C -0.051 4.051 7 C -0.126 4.126 8 C -0.038 4.038 9 C -0.087 4.087 10 C 0.067 3.933 11 O -0.349 6.349 12 C 0.056 3.944 13 C -0.007 4.007 14 N -0.456 5.456 15 C 0.156 3.844 16 C -0.503 4.503 17 H 0.063 0.937 18 C 0.053 3.947 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.273 1.273 23 H -0.287 1.287 24 C -0.008 4.008 25 C -0.129 4.129 26 C -0.059 4.059 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.002 0.998 41 H 0.261 0.739 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.135 0.865 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.065 -9.865 -7.318 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.355 3.645 4 O -0.396 6.396 5 C -0.137 4.137 6 C -0.069 4.069 7 C -0.143 4.143 8 C -0.038 4.038 9 C -0.124 4.124 10 C -0.010 4.010 11 O -0.268 6.268 12 C -0.003 4.003 13 C -0.137 4.137 14 N -0.178 5.178 15 C 0.029 3.971 16 C -0.541 4.541 17 H 0.082 0.918 18 C -0.148 4.148 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.198 1.198 23 H -0.213 1.213 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.077 4.077 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.122 0.878 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.152 0.848 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.805 -9.394 -8.048 31.349 hybrid contribution 0.110 0.717 0.911 1.164 sum -28.695 -8.677 -7.137 30.816 Atomic orbital electron populations 1.23303 0.75787 1.03893 1.02735 1.86541 1.23714 1.32654 1.84319 1.21273 0.89221 0.81435 0.72568 1.90840 1.66838 1.36045 1.45917 1.19079 0.88781 0.95222 1.10656 1.21271 0.94593 0.96703 0.94339 1.21128 0.93044 0.98866 1.01311 1.20144 0.95739 0.93198 0.94719 1.20593 0.89501 1.05145 0.97192 1.22424 0.82474 1.00226 0.95914 1.87966 1.17935 1.94282 1.26587 1.23309 0.94034 0.98428 0.84490 1.24036 0.92447 0.96746 1.00422 1.69035 1.02164 1.01305 1.45341 1.20300 0.87935 0.97541 0.91289 1.21121 1.08376 1.10468 1.14158 0.91834 1.25012 0.97162 0.97543 0.95059 1.69960 1.21550 1.40577 1.22056 0.86469 0.79532 0.82762 0.78493 1.20604 1.19836 1.21327 1.24220 0.93199 0.97543 0.98804 1.21135 0.94199 0.97812 1.01499 1.21450 0.93801 0.97883 0.94603 0.91733 0.91744 0.87844 0.84421 0.84537 0.89302 0.89460 0.93352 0.93195 0.91117 0.90105 0.91216 0.95339 0.97979 0.92970 0.91256 0.90295 0.84757 0.84393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.92 9.82 -40.52 -0.40 -3.31 16 3 C 0.51 5.07 7.90 34.61 0.27 5.35 16 4 O -0.51 -6.23 16.14 -19.25 -0.31 -6.54 16 5 C -0.14 -1.23 5.87 -104.98 -0.62 -1.85 16 6 C -0.05 -0.44 9.60 -39.17 -0.38 -0.82 16 7 C -0.13 -1.02 9.68 -39.64 -0.38 -1.41 16 8 C -0.04 -0.31 5.14 -104.52 -0.54 -0.85 16 9 C -0.09 -0.79 5.71 -27.88 -0.16 -0.95 16 10 C 0.07 0.72 5.76 37.16 0.21 0.94 16 11 O -0.35 -5.32 10.39 -35.23 -0.37 -5.69 16 12 C 0.06 0.87 4.66 -26.20 -0.12 0.75 16 13 C -0.01 -0.13 7.52 -7.53 -0.06 -0.18 16 14 N -0.46 -10.30 6.32 -246.08 -1.55 -11.85 16 15 C 0.16 4.14 4.57 -4.98 -0.02 4.12 16 16 C -0.50 -14.67 9.39 -34.44 -0.32 -14.99 16 17 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 20 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C -0.01 -0.15 7.55 -7.54 -0.06 -0.21 16 25 C -0.13 -0.95 9.68 -39.64 -0.38 -1.33 16 26 C -0.06 -0.45 9.62 -39.17 -0.38 -0.82 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 31 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 32 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.90 7.88 -51.93 -0.41 0.49 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.07 1.20 7.91 -51.93 -0.41 0.78 16 39 H 0.03 0.81 8.08 -51.92 -0.42 0.39 16 40 H 0.00 0.07 7.30 -51.93 -0.38 -0.31 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.07 1.30 7.42 -51.93 -0.39 0.91 16 43 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.14 0.81 7.61 -52.48 -0.40 0.41 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -34.12 384.71 -10.07 -44.19 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -6.99 Total: -3.74 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.96 Total: -9.55 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.82 Total: -38.23 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -1.07 Total: -15.55 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.12 -10.07 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224436913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.107 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds