Wall clock time and date at job start Tue Mar 31 2020 12:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34718 * 116.99982 * 2 1 4 4 O 1.21471 * 119.99664 * 359.97438 * 3 2 1 5 5 C 1.47722 * 119.99854 * 180.02562 * 3 2 1 6 6 C 1.39645 * 120.15220 * 5.07014 * 5 3 2 7 7 C 1.37925 * 119.84909 * 179.97438 * 6 5 3 8 8 C 1.38387 * 120.15061 * 359.97438 * 7 6 5 9 9 C 1.38347 * 120.30034 * 359.72565 * 8 7 6 10 10 C 1.37961 * 120.14990 * 0.55312 * 9 8 7 11 11 C 1.50704 * 120.07810 * 179.71870 * 10 9 8 12 12 C 1.53001 * 109.47320 * 258.13802 * 11 10 9 13 13 O 1.42901 * 109.46979 * 179.97438 * 12 11 10 14 14 C 1.42897 * 113.99721 * 180.02562 * 13 12 11 15 15 H 1.09002 * 110.64675 * 29.29980 * 14 13 12 16 16 C 1.55158 * 110.87431 * 152.54580 * 14 13 12 17 17 C 1.54907 * 101.58216 * 153.93220 * 16 14 13 18 18 N 1.47415 * 104.83408 * 322.99152 * 17 16 14 19 19 C 1.36939 * 125.65160 * 204.16735 * 18 17 16 20 20 H 1.07996 * 120.00534 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99844 * 359.95432 * 19 18 17 22 22 N 1.31617 * 119.99995 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46966 * 60.00266 * 23 21 19 25 25 H 1.48502 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46956 * 300.00266 * 23 21 19 27 27 C 1.47018 * 108.70396 * 24.12869 * 18 17 16 28 28 H 1.09000 * 109.47044 * 59.99833 * 1 2 3 29 29 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46833 * 300.00353 * 1 2 3 31 31 H 1.08012 * 120.07547 * 359.96042 * 6 5 3 32 32 H 1.08003 * 119.92218 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.84768 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.92503 * 180.29238 * 9 8 7 35 35 H 1.09002 * 109.47265 * 138.13580 * 11 10 9 36 36 H 1.09003 * 109.46783 * 18.13548 * 11 10 9 37 37 H 1.09002 * 109.47133 * 59.99697 * 12 11 10 38 38 H 1.08993 * 109.46854 * 299.99739 * 12 11 10 39 39 H 1.09003 * 111.00843 * 272.01181 * 16 14 13 40 40 H 1.09003 * 111.00067 * 35.85816 * 16 14 13 41 41 H 1.09010 * 110.36337 * 204.15195 * 17 16 14 42 42 H 1.08996 * 110.36513 * 81.83399 * 17 16 14 43 43 H 0.97000 * 120.00696 * 180.02562 * 22 21 19 44 44 H 1.09006 * 109.88368 * 239.52566 * 27 18 17 45 45 H 1.08999 * 110.01323 * 118.43390 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3022 0.1132 -0.1078 7 6 5.6792 0.1927 -0.1082 8 6 6.3045 1.4227 -0.0032 9 6 5.5542 2.5808 0.0971 10 6 4.1762 2.5153 0.1045 11 6 3.3606 3.7773 0.2203 12 6 2.8486 3.9239 1.6546 13 8 2.0758 5.1209 1.7644 14 6 1.5482 5.3541 3.0718 15 1 2.1985 4.9207 3.8316 16 6 1.3455 6.8717 3.3235 17 6 0.2144 6.8630 4.3819 18 7 -0.6656 5.7490 3.9847 19 6 -1.9925 5.6280 4.3011 20 1 -2.5529 4.7701 3.9604 21 6 -2.6170 6.6082 5.0603 22 7 -1.9341 7.6539 5.4755 23 14 -4.4268 6.4429 5.4926 24 1 -4.6377 5.1967 6.2721 25 1 -4.8507 7.6124 6.3037 26 1 -5.2307 6.3886 4.2453 27 6 0.1169 4.7897 3.1917 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.8154 -0.8475 -0.1900 32 1 6.2707 -0.7071 -0.1916 33 1 7.3829 1.4793 -0.0045 34 1 6.0485 3.5380 0.1740 35 1 2.5140 3.7268 -0.4644 36 1 3.9823 4.6361 -0.0332 37 1 3.6953 3.9743 2.3393 38 1 2.2271 3.0652 1.9080 39 1 2.2518 7.3259 3.7240 40 1 1.0252 7.3792 2.4136 41 1 -0.3331 7.8054 4.3598 42 1 0.6259 6.6856 5.3755 43 1 -2.3703 8.3386 6.0063 44 1 -0.3233 4.6820 2.2003 45 1 0.1406 3.8224 3.6936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224737162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:47 Heat of formation + Delta-G solvation = -71.555462 kcal Electronic energy + Delta-G solvation = -26807.049416 eV Core-core repulsion = 22983.882245 eV Total energy + Delta-G solvation = -3823.167171 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93120 -39.15420 -38.21855 -36.67474 -35.84785 -33.41074 -32.01803 -31.82872 -29.38614 -28.70099 -27.76858 -26.81902 -24.53898 -24.16391 -23.27685 -21.79873 -20.80692 -20.07270 -19.99286 -18.12421 -17.11275 -16.88247 -16.69912 -16.30724 -16.01465 -15.63267 -14.96687 -14.73057 -14.62901 -14.35080 -13.99937 -13.67296 -13.49354 -13.33090 -13.04419 -12.71284 -12.37329 -12.28269 -12.15811 -12.03591 -11.67542 -11.52097 -11.37191 -11.09744 -10.98083 -10.90951 -10.70763 -10.68720 -10.19279 -10.10957 -10.08050 -9.68791 -9.46701 -9.37509 -9.09056 -8.92718 -8.59122 -6.76513 -5.59124 -3.00498 0.41402 0.98640 2.36651 2.51450 3.41656 3.44743 3.48120 3.49991 4.00142 4.39216 4.53699 4.56822 4.58252 4.77417 4.95960 4.99786 5.08401 5.11046 5.24947 5.32532 5.38924 5.45939 5.51874 5.56887 5.57987 5.62217 5.67697 5.86262 5.88480 5.90270 5.97684 6.04863 6.06568 6.23138 6.40814 6.45944 6.55649 6.63611 6.68288 6.78181 6.88039 7.56191 7.62529 7.68582 7.79331 7.92385 8.42209 9.28229 9.89021 10.54515 11.45044 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002990 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.311502 B = 9363.846209 C =10656.059215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.360 6.360 3 C 0.497 3.503 4 O -0.478 6.478 5 C -0.125 4.125 6 C -0.061 4.061 7 C -0.140 4.140 8 C -0.082 4.082 9 C -0.128 4.128 10 C -0.011 4.011 11 C -0.094 4.094 12 C 0.081 3.919 13 O -0.373 6.373 14 C 0.077 3.923 15 H 0.059 0.941 16 C -0.138 4.138 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.219 4.219 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.924 5.924 23 Si 0.916 3.084 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.119 3.881 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.012 0.988 43 H 0.252 0.748 44 H 0.035 0.965 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.060 -15.733 -12.710 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.341 3.659 4 O -0.366 6.366 5 C -0.126 4.126 6 C -0.079 4.079 7 C -0.158 4.158 8 C -0.100 4.100 9 C -0.146 4.146 10 C -0.012 4.012 11 C -0.131 4.131 12 C 0.004 3.996 13 O -0.292 6.292 14 C 0.020 3.980 15 H 0.077 0.923 16 C -0.176 4.176 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.573 5.573 23 Si 0.746 3.254 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.212 1.212 27 C -0.007 4.007 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.087 0.913 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 16.612 -15.199 -12.746 25.874 hybrid contribution -0.999 -0.433 0.525 1.209 sum 15.614 -15.632 -12.221 25.249 Atomic orbital electron populations 1.23315 0.75528 1.03694 1.03190 1.86497 1.23877 1.32741 1.84550 1.21239 0.89127 0.81751 0.73761 1.90924 1.66630 1.34982 1.44023 1.19008 0.89283 0.94563 1.09722 1.21461 0.93966 0.97762 0.94731 1.21155 0.94309 0.98199 1.02124 1.21446 1.00375 0.92389 0.95813 1.21109 0.92509 0.99319 1.01662 1.19944 0.93905 0.93595 0.93716 1.20800 1.00337 0.93225 0.98745 1.22198 0.93746 0.88666 0.94998 1.87890 1.69174 1.41007 1.31131 1.23191 0.94175 0.97724 0.82957 0.92295 1.23149 1.00024 0.93072 1.01385 1.21950 0.88127 0.95550 0.91564 1.44387 1.06667 1.21204 1.60671 1.19052 0.83899 1.04984 1.26847 0.90586 1.24788 0.98437 0.97115 1.00464 1.69770 1.34514 1.11566 1.41494 0.86131 0.84445 0.76845 0.77962 1.21277 1.21549 1.21162 1.21670 0.90780 0.92690 0.95554 0.91684 0.88055 0.91331 0.84452 0.85166 0.85254 0.84774 0.87117 0.90439 0.94384 0.93496 0.92100 0.91139 0.87200 0.96955 0.93694 0.94686 0.96592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.12 9.83 -40.54 -0.40 -4.52 16 3 C 0.50 6.55 7.48 34.61 0.26 6.81 16 4 O -0.48 -7.69 11.61 -19.24 -0.22 -7.91 16 5 C -0.12 -1.42 5.86 -104.99 -0.62 -2.03 16 6 C -0.06 -0.53 9.62 -39.17 -0.38 -0.91 16 7 C -0.14 -0.98 10.03 -39.64 -0.40 -1.38 16 8 C -0.08 -0.58 10.04 -39.49 -0.40 -0.97 16 9 C -0.13 -1.12 9.66 -39.64 -0.38 -1.50 16 10 C -0.01 -0.13 5.18 -104.21 -0.54 -0.66 16 11 C -0.09 -1.26 4.99 -27.88 -0.14 -1.40 16 12 C 0.08 1.28 5.30 37.16 0.20 1.47 16 13 O -0.37 -7.19 10.08 -35.23 -0.36 -7.55 16 14 C 0.08 1.59 3.42 -24.90 -0.09 1.51 16 15 H 0.06 1.13 7.85 -51.93 -0.41 0.72 16 16 C -0.14 -2.93 6.82 -24.58 -0.17 -3.10 16 17 C 0.15 3.96 5.89 -2.54 -0.01 3.94 16 18 N -0.60 -16.70 3.39 -170.08 -0.58 -17.28 16 19 C -0.22 -6.47 10.27 -15.06 -0.15 -6.62 16 20 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 21 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 22 N -0.92 -27.82 10.09 55.49 0.56 -27.26 16 23 Si 0.92 22.77 29.55 -169.99 -5.02 17.75 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 27 C 0.12 2.86 7.02 -3.07 -0.02 2.84 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.14 0.99 7.62 -52.48 -0.40 0.59 16 32 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 33 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 34 H 0.13 0.94 8.02 -52.49 -0.42 0.52 16 35 H 0.11 1.69 5.90 -51.93 -0.31 1.39 16 36 H 0.08 0.92 7.98 -51.93 -0.41 0.50 16 37 H 0.04 0.54 8.11 -51.93 -0.42 0.12 16 38 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.11 3.14 5.87 -51.92 -0.30 2.83 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.04 0.88 8.06 -51.93 -0.42 0.46 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -34.08 368.62 -9.11 -43.18 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.78 Total: -0.90 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.86 Total: -1.06 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.02 Total: -44.54 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.98 Total: -19.98 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.08 -9.11 -43.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224737162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.371 kcal (2) G-P(sol) polarization free energy of solvation -34.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds