Wall clock time and date at job start Tue Mar 31 2020 12:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34706 * 116.99946 * 2 1 4 4 O 1.21467 * 120.00315 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99493 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.15169 * 5.53669 * 5 3 2 7 7 C 1.37923 * 119.84760 * 180.02562 * 6 5 3 8 8 C 1.38389 * 120.15129 * 359.97438 * 7 6 5 9 9 C 1.38353 * 120.30164 * 359.72476 * 8 7 6 10 10 C 1.37961 * 120.14925 * 0.55791 * 9 8 7 11 11 C 1.50704 * 120.07601 * 179.72446 * 10 9 8 12 12 C 1.52996 * 109.47306 * 97.93214 * 11 10 9 13 13 O 1.42900 * 109.46879 * 179.97438 * 12 11 10 14 14 C 1.42900 * 113.99880 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.88550 * 327.57319 * 14 13 12 16 16 C 1.55155 * 111.00168 * 203.65445 * 14 13 12 17 17 C 1.54334 * 102.93851 * 206.42179 * 16 14 13 18 18 N 1.47020 * 107.26938 * 22.19478 * 17 16 14 19 19 C 1.36938 * 125.64703 * 181.02495 * 18 17 16 20 20 H 1.07997 * 120.00481 * 185.09596 * 19 18 17 21 21 C 1.38817 * 120.00015 * 5.09482 * 19 18 17 22 22 N 1.31627 * 119.99719 * 354.43646 * 21 19 18 23 23 Si 1.86798 * 120.00089 * 174.43760 * 21 19 18 24 24 H 1.48504 * 109.46971 * 94.99664 * 23 21 19 25 25 H 1.48507 * 109.46980 * 214.99594 * 23 21 19 26 26 H 1.48497 * 109.46941 * 334.99482 * 23 21 19 27 27 C 1.47420 * 108.70632 * 1.05378 * 18 17 16 28 28 H 1.08998 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46848 * 300.00357 * 1 2 3 30 30 H 1.08995 * 109.47067 * 59.99753 * 1 2 3 31 31 H 1.07998 * 120.07838 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.92908 * 179.97438 * 7 6 5 33 33 H 1.08001 * 119.85178 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.92435 * 180.27781 * 9 8 7 35 35 H 1.08992 * 109.46897 * 337.92807 * 11 10 9 36 36 H 1.09004 * 109.46615 * 217.93400 * 11 10 9 37 37 H 1.09004 * 109.47107 * 59.99736 * 12 11 10 38 38 H 1.08998 * 109.47005 * 299.99547 * 12 11 10 39 39 H 1.08999 * 110.72148 * 324.78523 * 16 14 13 40 40 H 1.09000 * 110.72432 * 88.06431 * 16 14 13 41 41 H 1.08998 * 109.87913 * 262.77126 * 17 16 14 42 42 H 1.09001 * 110.00881 * 141.68427 * 17 16 14 43 43 H 0.97003 * 119.99425 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.37083 * 217.03691 * 27 18 17 45 45 H 1.09004 * 110.45932 * 94.75800 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2774 -0.0006 6 6 4.3021 0.1139 -0.1176 7 6 5.6790 0.1932 -0.1169 8 6 6.3045 1.4222 -0.0011 9 6 5.5544 2.5796 0.1090 10 6 4.1763 2.5141 0.1155 11 6 3.3609 3.7752 0.2417 12 6 2.9045 4.2286 -1.1464 13 8 2.1309 5.4240 -1.0266 14 6 1.6535 5.9347 -2.2729 15 1 2.3593 5.7222 -3.0759 16 6 1.3620 7.4556 -2.1756 17 6 0.2832 7.6706 -3.2582 18 7 -0.3589 6.3701 -3.4988 19 6 -1.3574 6.1285 -4.4043 20 1 -1.8216 5.1544 -4.4492 21 6 -1.7731 7.1356 -5.2644 22 7 -1.2862 8.3519 -5.1376 23 14 -3.0234 6.7648 -6.6018 24 1 -4.3845 7.1054 -6.1152 25 1 -2.7123 7.5732 -7.8081 26 1 -2.9673 5.3212 -6.9453 27 6 0.2496 5.3695 -2.6035 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.8153 -0.8460 -0.2077 32 1 6.2706 -0.7059 -0.2069 33 1 7.3830 1.4788 -0.0015 34 1 6.0488 3.5359 0.1945 35 1 3.9688 4.5567 0.6975 36 1 2.4885 3.5828 0.8662 37 1 2.2967 3.4469 -1.6023 38 1 3.7769 4.4210 -1.7709 39 1 0.9751 7.7118 -1.1894 40 1 2.2568 8.0351 -2.4026 41 1 0.7464 8.0310 -4.1766 42 1 -0.4570 8.3906 -2.9092 43 1 -1.5769 9.0558 -5.7384 44 1 0.3374 4.4092 -3.1117 45 1 -0.3406 5.2636 -1.6933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224737164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:52 Heat of formation + Delta-G solvation = -73.123917 kcal Electronic energy + Delta-G solvation = -26772.514860 eV Core-core repulsion = 22949.279676 eV Total energy + Delta-G solvation = -3823.235184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92787 -39.15602 -38.18857 -36.67804 -35.85052 -33.40516 -32.01564 -31.82465 -29.38550 -28.69568 -27.77738 -26.82103 -24.51318 -24.14450 -23.29578 -21.79626 -20.77718 -20.14549 -19.93410 -18.13097 -17.13508 -16.87616 -16.66133 -16.30238 -16.00980 -15.65446 -14.93504 -14.65861 -14.61039 -14.34374 -14.01110 -13.66317 -13.47074 -13.36528 -12.92249 -12.75630 -12.43718 -12.29798 -12.16251 -12.01081 -11.82115 -11.63053 -11.36516 -11.09756 -10.92957 -10.87978 -10.73745 -10.53424 -10.16340 -10.09856 -10.05506 -9.70347 -9.62648 -9.36888 -9.09707 -8.88714 -8.51812 -6.75881 -5.66299 -2.98839 0.41987 0.99005 2.36920 2.50646 3.41499 3.43472 3.48212 3.50749 4.00599 4.39278 4.53837 4.57211 4.59275 4.77337 4.96333 4.98106 5.07863 5.09795 5.26529 5.33656 5.40240 5.45974 5.50279 5.58844 5.61857 5.65354 5.71495 5.87600 5.89761 5.90820 5.97439 6.04443 6.07206 6.25034 6.36641 6.43486 6.54500 6.59688 6.63763 6.80553 6.88696 7.61442 7.62082 7.69784 7.78644 7.90192 8.32227 9.27647 9.88044 10.55291 11.45753 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.002993 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.610041 B = 9354.167900 C =10401.602222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.496 3.504 4 O -0.477 6.477 5 C -0.124 4.124 6 C -0.061 4.061 7 C -0.139 4.139 8 C -0.082 4.082 9 C -0.128 4.128 10 C -0.012 4.012 11 C -0.090 4.090 12 C 0.082 3.918 13 O -0.376 6.376 14 C 0.075 3.925 15 H 0.063 0.937 16 C -0.137 4.137 17 C 0.178 3.822 18 N -0.605 5.605 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.121 3.879 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.038 0.962 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.043 0.957 43 H 0.252 0.748 44 H 0.034 0.966 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.358 -17.464 12.914 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.340 3.660 4 O -0.365 6.365 5 C -0.125 4.125 6 C -0.079 4.079 7 C -0.157 4.157 8 C -0.100 4.100 9 C -0.146 4.146 10 C -0.012 4.012 11 C -0.127 4.127 12 C 0.005 3.995 13 O -0.295 6.295 14 C 0.016 3.984 15 H 0.081 0.919 16 C -0.175 4.175 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.006 4.006 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.962 -16.959 12.922 26.046 hybrid contribution -0.797 -0.305 -1.001 1.315 sum 14.164 -17.264 11.921 25.313 Atomic orbital electron populations 1.23303 0.75595 1.03657 1.03144 1.86496 1.23825 1.32757 1.84594 1.21231 0.89128 0.81736 0.73891 1.90938 1.66683 1.34975 1.43866 1.19011 0.89276 0.94569 1.09639 1.21457 0.93966 0.97775 0.94741 1.21157 0.94316 0.98224 1.02048 1.21449 1.00383 0.92388 0.95815 1.21106 0.92530 0.99276 1.01652 1.19936 0.93909 0.93573 0.93829 1.20739 1.00274 0.92846 0.98858 1.22191 0.93886 0.88046 0.95401 1.87833 1.70384 1.40708 1.30534 1.23355 0.95309 0.95099 0.84622 0.91920 1.22963 1.00107 0.93177 1.01246 1.21175 0.91446 0.88056 0.94012 1.44372 1.41734 1.04195 1.42972 1.19070 1.09955 0.97402 1.08982 0.90500 1.24828 1.00409 0.95707 0.99583 1.69979 1.46772 1.00525 1.39673 0.86107 0.80756 0.77342 0.81635 1.21677 1.21639 1.20675 1.21901 0.91893 0.92845 0.93938 0.88089 0.91694 0.91385 0.84456 0.85166 0.85253 0.84776 0.90512 0.87674 0.92990 0.94424 0.91513 0.91935 0.93168 0.93890 0.93790 0.94765 0.95418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.02 9.83 -40.51 -0.40 -4.42 16 3 C 0.50 6.44 7.77 34.61 0.27 6.71 16 4 O -0.48 -7.56 11.39 -19.24 -0.22 -7.78 16 5 C -0.12 -1.40 5.87 -104.98 -0.62 -2.01 16 6 C -0.06 -0.53 9.62 -39.17 -0.38 -0.91 16 7 C -0.14 -0.99 10.03 -39.64 -0.40 -1.39 16 8 C -0.08 -0.58 10.04 -39.48 -0.40 -0.98 16 9 C -0.13 -1.12 9.66 -39.64 -0.38 -1.50 16 10 C -0.01 -0.13 5.17 -104.21 -0.54 -0.67 16 11 C -0.09 -1.19 4.97 -27.88 -0.14 -1.33 16 12 C 0.08 1.29 5.33 37.16 0.20 1.49 16 13 O -0.38 -7.13 10.15 -35.23 -0.36 -7.49 16 14 C 0.07 1.53 3.49 -24.58 -0.09 1.45 16 15 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 16 C -0.14 -2.87 6.69 -24.89 -0.17 -3.03 16 17 C 0.18 4.61 5.39 -3.06 -0.02 4.59 16 18 N -0.60 -16.68 3.39 -170.07 -0.58 -17.26 16 19 C -0.23 -6.64 10.27 -15.06 -0.15 -6.79 16 20 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 22 N -0.92 -27.94 10.34 55.49 0.57 -27.37 16 23 Si 0.91 22.73 29.56 -169.99 -5.02 17.71 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.12 2.86 6.97 -2.53 -0.02 2.85 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.14 0.99 7.62 -52.49 -0.40 0.59 16 32 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.13 0.95 8.05 -52.49 -0.42 0.53 16 35 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 36 H 0.11 1.57 5.96 -51.93 -0.31 1.26 16 37 H 0.05 0.89 6.58 -51.93 -0.34 0.55 16 38 H 0.04 0.54 8.11 -51.93 -0.42 0.12 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.40 7.26 -51.93 -0.38 1.02 16 42 H 0.04 1.21 7.63 -51.93 -0.40 0.82 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -34.18 369.67 -9.13 -43.31 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.85 Total: -1.77 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -1.85 Total: -0.50 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.00 Total: -44.63 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.98 Total: -19.69 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.18 -9.13 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224737164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.812 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds