Wall clock time and date at job start Tue Mar 31 2020 12:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34706 * 116.99946 * 2 1 4 4 O 1.21467 * 120.00315 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99493 * 180.02562 * 3 2 1 6 6 C 1.39646 * 120.15169 * 5.53669 * 5 3 2 7 7 C 1.37923 * 119.84760 * 180.02562 * 6 5 3 8 8 C 1.38389 * 120.15129 * 359.97438 * 7 6 5 9 9 C 1.38353 * 120.30164 * 359.72476 * 8 7 6 10 10 C 1.37961 * 120.14925 * 0.55791 * 9 8 7 11 11 C 1.50704 * 120.07601 * 179.72446 * 10 9 8 12 12 C 1.52996 * 109.47306 * 97.93214 * 11 10 9 13 13 O 1.42900 * 109.46879 * 179.97438 * 12 11 10 14 14 C 1.42900 * 113.99880 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.88550 * 327.57319 * 14 13 12 16 16 C 1.55155 * 111.00168 * 203.65445 * 14 13 12 17 17 C 1.54334 * 102.93851 * 206.42179 * 16 14 13 18 18 N 1.47020 * 107.26938 * 22.19478 * 17 16 14 19 19 C 1.36938 * 125.64703 * 181.02495 * 18 17 16 20 20 H 1.07997 * 120.00481 * 185.09596 * 19 18 17 21 21 C 1.38817 * 120.00015 * 5.09482 * 19 18 17 22 22 N 1.31627 * 119.99719 * 354.43646 * 21 19 18 23 23 Si 1.86798 * 120.00089 * 174.43760 * 21 19 18 24 24 H 1.48504 * 109.46971 * 94.99664 * 23 21 19 25 25 H 1.48507 * 109.46980 * 214.99594 * 23 21 19 26 26 H 1.48497 * 109.46941 * 334.99482 * 23 21 19 27 27 C 1.47420 * 108.70632 * 1.05378 * 18 17 16 28 28 H 1.08998 * 109.47353 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46848 * 300.00357 * 1 2 3 30 30 H 1.08995 * 109.47067 * 59.99753 * 1 2 3 31 31 H 1.07998 * 120.07838 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.92908 * 179.97438 * 7 6 5 33 33 H 1.08001 * 119.85178 * 180.02562 * 8 7 6 34 34 H 1.07997 * 119.92435 * 180.27781 * 9 8 7 35 35 H 1.08992 * 109.46897 * 337.92807 * 11 10 9 36 36 H 1.09004 * 109.46615 * 217.93400 * 11 10 9 37 37 H 1.09004 * 109.47107 * 59.99736 * 12 11 10 38 38 H 1.08998 * 109.47005 * 299.99547 * 12 11 10 39 39 H 1.08999 * 110.72148 * 324.78523 * 16 14 13 40 40 H 1.09000 * 110.72432 * 88.06431 * 16 14 13 41 41 H 1.08998 * 109.87913 * 262.77126 * 17 16 14 42 42 H 1.09001 * 110.00881 * 141.68427 * 17 16 14 43 43 H 0.97003 * 119.99425 * 180.02562 * 22 21 19 44 44 H 1.08998 * 110.37083 * 217.03691 * 27 18 17 45 45 H 1.09004 * 110.45932 * 94.75800 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2774 -0.0006 6 6 4.3021 0.1139 -0.1176 7 6 5.6790 0.1932 -0.1169 8 6 6.3045 1.4222 -0.0011 9 6 5.5544 2.5796 0.1090 10 6 4.1763 2.5141 0.1155 11 6 3.3609 3.7752 0.2417 12 6 2.9045 4.2286 -1.1464 13 8 2.1309 5.4240 -1.0266 14 6 1.6535 5.9347 -2.2729 15 1 2.3593 5.7222 -3.0759 16 6 1.3620 7.4556 -2.1756 17 6 0.2832 7.6706 -3.2582 18 7 -0.3589 6.3701 -3.4988 19 6 -1.3574 6.1285 -4.4043 20 1 -1.8216 5.1544 -4.4492 21 6 -1.7731 7.1356 -5.2644 22 7 -1.2862 8.3519 -5.1376 23 14 -3.0234 6.7648 -6.6018 24 1 -4.3845 7.1054 -6.1152 25 1 -2.7123 7.5732 -7.8081 26 1 -2.9673 5.3212 -6.9453 27 6 0.2496 5.3695 -2.6035 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.8153 -0.8460 -0.2077 32 1 6.2706 -0.7059 -0.2069 33 1 7.3830 1.4788 -0.0015 34 1 6.0488 3.5359 0.1945 35 1 3.9688 4.5567 0.6975 36 1 2.4885 3.5828 0.8662 37 1 2.2967 3.4469 -1.6023 38 1 3.7769 4.4210 -1.7709 39 1 0.9751 7.7118 -1.1894 40 1 2.2568 8.0351 -2.4026 41 1 0.7464 8.0310 -4.1766 42 1 -0.4570 8.3906 -2.9092 43 1 -1.5769 9.0558 -5.7384 44 1 0.3374 4.4092 -3.1117 45 1 -0.3406 5.2636 -1.6933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224737164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:51 Heat of formation + Delta-G solvation = -93.080325 kcal Electronic energy + Delta-G solvation = -26773.380235 eV Core-core repulsion = 22949.279676 eV Total energy + Delta-G solvation = -3824.100559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81695 -40.06395 -39.71778 -37.81259 -37.41377 -34.62960 -33.84953 -32.51636 -31.21140 -29.89620 -28.82096 -28.45462 -26.40215 -25.14960 -24.26545 -22.67490 -22.09579 -21.92782 -21.46208 -19.04300 -18.90995 -18.12385 -17.92207 -17.37968 -16.90881 -16.74510 -16.53744 -16.12862 -15.76950 -15.52569 -15.49195 -14.99303 -14.50933 -14.44539 -14.11910 -14.03737 -13.93752 -13.72613 -13.51847 -13.16905 -13.05931 -12.92567 -12.73631 -12.66982 -12.40748 -12.13814 -12.10033 -12.05081 -11.97318 -11.84321 -11.74188 -11.47028 -11.13964 -10.73666 -10.45343 -10.03259 -9.80227 -8.97490 -7.90193 -5.27246 -0.32275 0.34144 1.43254 1.45945 1.51392 1.55655 1.68309 2.41590 2.56903 2.83957 3.27966 3.63866 3.66734 3.78853 3.84151 3.87772 3.99773 4.09851 4.12190 4.22476 4.27924 4.29077 4.32710 4.40723 4.46016 4.48638 4.57291 4.65754 4.67772 4.78893 4.90576 4.91980 4.93497 5.00825 5.04319 5.10732 5.32563 5.32995 5.38076 5.47690 5.57088 5.58205 5.68334 5.91025 6.11624 6.31713 6.68816 7.04206 7.68996 8.35170 9.20624 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015972 B = 0.002993 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.610041 B = 9354.167900 C =10401.602222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.492 3.508 4 O -0.518 6.518 5 C -0.148 4.148 6 C -0.064 4.064 7 C -0.132 4.132 8 C -0.073 4.073 9 C -0.130 4.130 10 C -0.032 4.032 11 C -0.081 4.081 12 C 0.080 3.920 13 O -0.383 6.383 14 C 0.091 3.909 15 H 0.074 0.926 16 C -0.122 4.122 17 C 0.186 3.814 18 N -0.625 5.625 19 C -0.252 4.252 20 H 0.078 0.922 21 C -0.062 4.062 22 N -0.949 5.949 23 Si 0.984 3.016 24 H -0.285 1.285 25 H -0.288 1.288 26 H -0.269 1.269 27 C 0.120 3.880 28 H 0.137 0.863 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.164 0.836 34 H 0.151 0.849 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.026 0.974 42 H 0.010 0.990 43 H 0.250 0.750 44 H 0.033 0.967 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.870 -19.310 12.977 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.274 6.274 3 C 0.338 3.662 4 O -0.408 6.408 5 C -0.149 4.149 6 C -0.082 4.082 7 C -0.149 4.149 8 C -0.091 4.091 9 C -0.148 4.148 10 C -0.033 4.033 11 C -0.118 4.118 12 C 0.004 3.996 13 O -0.301 6.301 14 C 0.033 3.967 15 H 0.092 0.908 16 C -0.160 4.160 17 C 0.061 3.939 18 N -0.353 5.353 19 C -0.381 4.381 20 H 0.096 0.904 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.811 3.189 24 H -0.212 1.212 25 H -0.214 1.214 26 H -0.193 1.193 27 C -0.006 4.006 28 H 0.155 0.845 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.167 0.833 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.169 0.831 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.044 0.956 42 H 0.028 0.972 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 17.491 -18.847 13.010 28.817 hybrid contribution -1.542 0.160 -0.965 1.826 sum 15.949 -18.687 12.045 27.362 Atomic orbital electron populations 1.23506 0.74729 1.05709 1.02189 1.86496 1.24737 1.32008 1.84169 1.21755 0.90113 0.81544 0.72776 1.90917 1.67691 1.36187 1.46044 1.19116 0.88290 0.95835 1.11677 1.21671 0.94889 0.97297 0.94317 1.21583 0.93643 0.99665 1.00037 1.21880 1.02038 0.91558 0.93615 1.21359 0.91411 1.00979 1.01018 1.19869 0.94890 0.92462 0.96050 1.20580 0.99935 0.94504 0.96733 1.22375 0.93583 0.86124 0.97568 1.87826 1.70848 1.41999 1.29455 1.23052 0.93578 0.94363 0.85739 0.90795 1.22808 0.99585 0.94056 0.99592 1.20960 0.91693 0.86900 0.94368 1.44675 1.41813 1.05619 1.43193 1.19443 1.10978 0.97734 1.09931 0.90406 1.25739 1.02639 0.95448 1.01718 1.70188 1.47962 1.01251 1.40272 0.84994 0.77962 0.77701 0.78226 1.21205 1.21375 1.19336 1.21961 0.93683 0.92332 0.92603 0.84486 0.92089 0.92962 0.83325 0.81911 0.81845 0.83085 0.89067 0.90139 0.94977 0.92571 0.91032 0.88813 0.95624 0.97188 0.94048 0.94902 0.96810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -8.12 9.83 -56.15 -0.55 -8.67 16 3 C 0.49 13.28 7.77 70.33 0.55 13.83 16 4 O -0.52 -17.53 11.39 19.94 0.23 -17.30 16 5 C -0.15 -3.28 5.87 -20.10 -0.12 -3.40 16 6 C -0.06 -0.98 9.62 22.54 0.22 -0.77 16 7 C -0.13 -1.36 10.03 22.23 0.22 -1.14 16 8 C -0.07 -0.74 10.04 22.33 0.22 -0.51 16 9 C -0.13 -1.92 9.66 22.23 0.21 -1.70 16 10 C -0.03 -0.69 5.17 -19.60 -0.10 -0.80 16 11 C -0.08 -2.12 4.97 29.85 0.15 -1.97 16 12 C 0.08 2.51 5.33 71.98 0.38 2.90 16 13 O -0.38 -14.46 10.15 -148.98 -1.51 -15.97 16 14 C 0.09 3.75 3.49 31.98 0.11 3.86 16 15 H 0.07 2.88 7.90 -2.39 -0.02 2.86 16 16 C -0.12 -5.10 6.69 31.79 0.21 -4.88 16 17 C 0.19 9.92 5.39 86.73 0.47 10.38 16 18 N -0.63 -35.54 3.39 -691.99 -2.35 -37.89 16 19 C -0.25 -15.20 10.27 84.03 0.86 -14.34 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 21 C -0.06 -3.70 5.48 84.86 0.47 -3.23 16 22 N -0.95 -58.91 10.34 21.65 0.22 -58.69 16 23 Si 0.98 47.28 29.56 68.60 2.03 49.30 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 C 0.12 5.87 6.97 86.86 0.61 6.47 16 28 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.15 1.86 7.62 -2.91 -0.02 1.84 16 32 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 33 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 34 H 0.15 1.64 8.05 -2.91 -0.02 1.62 16 35 H 0.09 2.04 8.03 -2.39 -0.02 2.02 16 36 H 0.08 2.52 5.96 -2.39 -0.01 2.51 16 37 H 0.03 1.14 6.58 -2.38 -0.02 1.13 16 38 H 0.06 1.55 8.11 -2.39 -0.02 1.53 16 39 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.03 1.48 7.26 -2.39 -0.02 1.46 16 42 H 0.01 0.58 7.63 -2.39 -0.02 0.57 16 43 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -77.06 369.67 4.70 -72.36 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.98 Total: 10.36 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.66 Total: 6.50 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -2.13 Total: -96.58 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -1.84 Total: -41.94 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -77.06 4.70 -72.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224737164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.723 kcal (2) G-P(sol) polarization free energy of solvation -77.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds