Wall clock time and date at job start Tue Mar 31 2020 12:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34707 * 116.99850 * 2 1 4 4 O 1.21471 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.47727 * 120.00123 * 179.97438 * 3 2 1 6 6 C 1.39646 * 120.14832 * 5.67542 * 5 3 2 7 7 C 1.37924 * 119.84910 * 180.31967 * 6 5 3 8 8 C 1.38386 * 120.14585 * 359.65754 * 7 6 5 9 9 C 1.38348 * 120.30507 * 0.02562 * 8 7 6 10 10 C 1.37964 * 120.14904 * 0.04162 * 9 8 7 11 11 C 1.50699 * 120.07242 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46955 * 98.64067 * 11 10 9 13 13 O 1.42901 * 109.46776 * 179.97438 * 12 11 10 14 14 C 1.42901 * 113.99774 * 179.97438 * 13 12 11 15 15 C 1.53511 * 114.17053 * 209.99922 * 14 13 12 16 16 N 1.47474 * 87.93304 * 220.32902 * 15 14 13 17 17 C 1.46901 * 111.00296 * 138.70371 * 16 15 14 18 18 C 1.50694 * 109.47602 * 169.99865 * 17 16 15 19 19 H 1.08006 * 119.99614 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00186 * 179.72756 * 18 17 16 21 21 N 1.31517 * 119.99578 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00039 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46952 * 90.00474 * 22 20 18 24 24 H 1.48503 * 109.47232 * 210.00362 * 22 20 18 25 25 H 1.48505 * 109.47342 * 330.00345 * 22 20 18 26 26 C 1.47473 * 87.83669 * 27.01201 * 16 15 14 27 27 H 1.08995 * 109.47200 * 300.00104 * 1 2 3 28 28 H 1.09003 * 109.46930 * 60.00213 * 1 2 3 29 29 H 1.09001 * 109.46473 * 179.97438 * 1 2 3 30 30 H 1.08010 * 120.07746 * 359.97438 * 6 5 3 31 31 H 1.08000 * 119.92815 * 179.68565 * 7 6 5 32 32 H 1.08002 * 119.84532 * 180.02562 * 8 7 6 33 33 H 1.08007 * 119.92107 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47759 * 338.63879 * 11 10 9 35 35 H 1.09003 * 109.47123 * 218.63596 * 11 10 9 36 36 H 1.08995 * 109.47034 * 59.99883 * 12 11 10 37 37 H 1.08997 * 109.46855 * 299.99278 * 12 11 10 38 38 H 1.08999 * 113.38464 * 343.07920 * 14 13 12 39 39 H 1.09001 * 113.47819 * 105.56038 * 15 14 13 40 40 H 1.08999 * 113.47800 * 335.09581 * 15 14 13 41 41 H 1.09003 * 109.46822 * 49.99589 * 17 16 15 42 42 H 1.09004 * 109.47214 * 290.00436 * 17 16 15 43 43 H 0.97004 * 119.99635 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.48053 * 87.75754 * 26 16 15 45 45 H 1.09006 * 113.47473 * 218.22638 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3023 0.1144 -0.1183 7 6 5.6792 0.1931 -0.1104 8 6 6.3044 1.4220 0.0078 9 6 5.5542 2.5791 0.1194 10 6 4.1761 2.5145 0.1143 11 6 3.3606 3.7759 0.2364 12 6 2.9012 4.2228 -1.1529 13 8 2.1274 5.4186 -1.0369 14 6 1.6474 5.9235 -2.2846 15 6 1.4807 7.4490 -2.3230 16 7 0.2297 7.2398 -3.0754 17 6 -0.8229 8.1536 -2.6114 18 6 -1.9973 8.0868 -3.5532 19 1 -1.9649 7.4314 -4.4111 20 6 -3.1152 8.8586 -3.3170 21 7 -4.1403 8.7998 -4.1389 22 14 -3.1742 9.9863 -1.8291 23 1 -2.6364 11.3205 -2.1977 24 1 -4.5797 10.1284 -1.3712 25 1 -2.3536 9.4065 -0.7356 26 6 0.1178 5.9260 -2.4150 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.8156 -0.8454 -0.2106 31 1 6.2709 -0.7062 -0.1972 32 1 7.3830 1.4781 0.0130 33 1 6.0486 3.5350 0.2109 34 1 3.9690 4.5598 0.6875 35 1 2.4894 3.5860 0.8635 36 1 2.2928 3.4390 -1.6039 37 1 3.7723 4.4127 -1.7799 38 1 2.1682 5.5096 -3.1480 39 1 2.2545 7.9560 -2.8995 40 1 1.3269 7.8939 -1.3399 41 1 -0.4348 9.1718 -2.5861 42 1 -1.1423 7.8616 -1.6109 43 1 -4.9269 9.3425 -3.9725 44 1 -0.3997 5.9644 -1.4565 45 1 -0.2634 5.1421 -3.0695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224738116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:34 Heat of formation + Delta-G solvation = -56.330008 kcal Electronic energy + Delta-G solvation = -26245.209831 eV Core-core repulsion = 22422.702886 eV Total energy + Delta-G solvation = -3822.506946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.04094 -39.57251 -39.21431 -36.99740 -36.46065 -33.49054 -32.65918 -31.92707 -29.86110 -28.83341 -27.84460 -25.41454 -25.16172 -24.40247 -23.48251 -21.92120 -21.16853 -20.84640 -19.40315 -18.23103 -17.23674 -16.97747 -16.70412 -16.49081 -16.09866 -15.89882 -15.30069 -15.04735 -14.92235 -14.36912 -14.11488 -13.84791 -13.65265 -13.51925 -13.38132 -12.98581 -12.73440 -12.41961 -12.27136 -12.17796 -12.12652 -12.08066 -11.68270 -11.46356 -11.20445 -11.10141 -10.92336 -10.66383 -10.36352 -10.27856 -10.06639 -9.69632 -9.46938 -9.30129 -9.20603 -9.04545 -8.52886 -7.98126 -6.01472 -3.98440 0.31524 0.88882 2.25862 2.40445 3.30493 3.31293 3.38216 3.41195 3.79018 4.28912 4.45301 4.46307 4.47320 4.63712 4.83826 4.87521 4.89391 4.94809 4.99133 5.00318 5.14247 5.19596 5.26096 5.29480 5.34819 5.41721 5.48217 5.53146 5.76649 5.78275 5.89203 5.92564 5.98357 6.02693 6.09568 6.14681 6.28385 6.33784 6.36142 6.44558 6.51488 6.82004 7.34672 7.48932 7.54073 7.74454 7.87931 8.67287 9.08747 9.59960 11.11943 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.002597 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.181812 B =10778.749060 C =11757.131392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.497 3.503 4 O -0.480 6.480 5 C -0.125 4.125 6 C -0.061 4.061 7 C -0.139 4.139 8 C -0.082 4.082 9 C -0.128 4.128 10 C -0.013 4.013 11 C -0.091 4.091 12 C 0.081 3.919 13 O -0.371 6.371 14 C 0.055 3.945 15 C -0.007 4.007 16 N -0.453 5.453 17 C 0.130 3.870 18 C -0.505 4.505 19 H 0.080 0.920 20 C 0.067 3.933 21 N -0.901 5.901 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.268 1.268 26 C -0.003 4.003 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.003 0.997 43 H 0.263 0.737 44 H 0.072 0.928 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.715 -20.928 11.416 32.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.341 3.659 4 O -0.368 6.368 5 C -0.126 4.126 6 C -0.079 4.079 7 C -0.157 4.157 8 C -0.100 4.100 9 C -0.146 4.146 10 C -0.014 4.014 11 C -0.128 4.128 12 C 0.004 3.996 13 O -0.289 6.289 14 C -0.003 4.003 15 C -0.136 4.136 16 N -0.177 5.177 17 C 0.003 3.997 18 C -0.543 4.543 19 H 0.098 0.902 20 C -0.135 4.135 21 N -0.540 5.540 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.192 1.192 26 C -0.132 4.132 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.042 0.958 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.196 -20.381 10.834 31.337 hybrid contribution -0.447 0.561 1.384 1.559 sum 20.749 -19.820 12.218 31.187 Atomic orbital electron populations 1.23318 0.75494 1.03765 1.03136 1.86503 1.23892 1.32689 1.84506 1.21233 0.89125 0.81732 0.73773 1.90926 1.66734 1.35039 1.44108 1.19005 0.89265 0.94573 1.09726 1.21469 0.93975 0.97790 0.94654 1.21172 0.94323 0.98256 1.01905 1.21459 1.00439 0.92375 0.95690 1.21110 0.92500 0.99316 1.01625 1.19904 0.93898 0.93495 0.94054 1.20741 1.00367 0.92994 0.98708 1.22255 0.93903 0.87687 0.95765 1.87907 1.70155 1.40995 1.29890 1.23911 0.95138 0.95025 0.86208 1.24108 0.96311 0.94776 0.98395 1.68878 1.02755 1.02966 1.43121 1.20720 0.91454 0.92249 0.95287 1.20965 0.97370 1.25250 1.10736 0.90195 1.24919 0.95479 0.96749 0.96315 1.69901 1.05853 1.41074 1.37198 0.86862 0.77414 0.81643 0.83890 1.20116 1.21110 1.19242 1.24239 0.94957 0.95265 0.98786 0.91636 0.91415 0.88001 0.84407 0.85100 0.85197 0.84757 0.90428 0.87633 0.92849 0.94111 0.88901 0.90131 0.91391 0.95850 0.97969 0.92692 0.91026 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.57 101.05 1.07 1.36 16 2 O -0.36 -3.61 9.83 -40.51 -0.40 -4.00 16 3 C 0.50 5.81 7.76 34.61 0.27 6.08 16 4 O -0.48 -6.92 11.38 -19.24 -0.22 -7.14 16 5 C -0.12 -1.25 5.87 -104.99 -0.62 -1.86 16 6 C -0.06 -0.46 9.62 -39.17 -0.38 -0.84 16 7 C -0.14 -0.84 10.03 -39.64 -0.40 -1.23 16 8 C -0.08 -0.49 10.04 -39.49 -0.40 -0.89 16 9 C -0.13 -0.96 9.66 -39.64 -0.38 -1.35 16 10 C -0.01 -0.13 5.17 -104.21 -0.54 -0.67 16 11 C -0.09 -1.06 4.98 -27.88 -0.14 -1.20 16 12 C 0.08 1.09 5.29 37.16 0.20 1.29 16 13 O -0.37 -6.17 10.39 -35.23 -0.37 -6.54 16 14 C 0.06 0.95 4.65 -26.20 -0.12 0.83 16 15 C -0.01 -0.12 7.52 -7.56 -0.06 -0.18 16 16 N -0.45 -10.32 6.32 -246.15 -1.55 -11.87 16 17 C 0.13 3.37 3.64 -4.98 -0.02 3.35 16 18 C -0.50 -15.19 9.94 -34.44 -0.34 -15.54 16 19 H 0.08 2.63 8.06 -52.48 -0.42 2.20 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -28.51 13.96 55.43 0.77 -27.73 16 22 Si 0.87 22.28 27.47 -169.99 -4.67 17.61 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.27 -6.62 6.53 56.52 0.37 -6.25 16 26 C 0.00 -0.06 7.55 -7.56 -0.06 -0.12 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.14 0.85 7.63 -52.48 -0.40 0.45 16 31 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 32 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 33 H 0.13 0.79 8.05 -52.48 -0.42 0.37 16 34 H 0.08 0.80 8.02 -51.93 -0.42 0.39 16 35 H 0.11 1.44 5.97 -51.93 -0.31 1.13 16 36 H 0.05 0.78 6.56 -51.93 -0.34 0.44 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 1.44 7.88 -51.93 -0.41 1.03 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 41 H 0.02 0.60 7.52 -51.93 -0.39 0.21 16 42 H 0.00 0.07 6.34 -51.93 -0.33 -0.26 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.07 1.54 7.42 -51.93 -0.39 1.15 16 45 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -34.96 372.47 -9.62 -44.58 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.79 Total: -1.45 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.01 Total: -9.06 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.78 Total: -39.61 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.98 Total: -17.68 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.96 -9.62 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224738116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.753 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds