Wall clock time and date at job start Tue Mar 31 2020 12:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45211 * 1 3 3 C 1.34707 * 116.99850 * 2 1 4 4 O 1.21471 * 120.00094 * 359.97438 * 3 2 1 5 5 C 1.47727 * 120.00123 * 179.97438 * 3 2 1 6 6 C 1.39646 * 120.14832 * 5.67542 * 5 3 2 7 7 C 1.37924 * 119.84910 * 180.31967 * 6 5 3 8 8 C 1.38386 * 120.14585 * 359.65754 * 7 6 5 9 9 C 1.38348 * 120.30507 * 0.02562 * 8 7 6 10 10 C 1.37964 * 120.14904 * 0.04162 * 9 8 7 11 11 C 1.50699 * 120.07242 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46955 * 98.64067 * 11 10 9 13 13 O 1.42901 * 109.46776 * 179.97438 * 12 11 10 14 14 C 1.42901 * 113.99774 * 179.97438 * 13 12 11 15 15 C 1.53511 * 114.17053 * 209.99922 * 14 13 12 16 16 N 1.47474 * 87.93304 * 220.32902 * 15 14 13 17 17 C 1.46901 * 111.00296 * 138.70371 * 16 15 14 18 18 C 1.50694 * 109.47602 * 169.99865 * 17 16 15 19 19 H 1.08006 * 119.99614 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00186 * 179.72756 * 18 17 16 21 21 N 1.31517 * 119.99578 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00039 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46952 * 90.00474 * 22 20 18 24 24 H 1.48503 * 109.47232 * 210.00362 * 22 20 18 25 25 H 1.48505 * 109.47342 * 330.00345 * 22 20 18 26 26 C 1.47473 * 87.83669 * 27.01201 * 16 15 14 27 27 H 1.08995 * 109.47200 * 300.00104 * 1 2 3 28 28 H 1.09003 * 109.46930 * 60.00213 * 1 2 3 29 29 H 1.09001 * 109.46473 * 179.97438 * 1 2 3 30 30 H 1.08010 * 120.07746 * 359.97438 * 6 5 3 31 31 H 1.08000 * 119.92815 * 179.68565 * 7 6 5 32 32 H 1.08002 * 119.84532 * 180.02562 * 8 7 6 33 33 H 1.08007 * 119.92107 * 180.02562 * 9 8 7 34 34 H 1.08999 * 109.47759 * 338.63879 * 11 10 9 35 35 H 1.09003 * 109.47123 * 218.63596 * 11 10 9 36 36 H 1.08995 * 109.47034 * 59.99883 * 12 11 10 37 37 H 1.08997 * 109.46855 * 299.99278 * 12 11 10 38 38 H 1.08999 * 113.38464 * 343.07920 * 14 13 12 39 39 H 1.09001 * 113.47819 * 105.56038 * 15 14 13 40 40 H 1.08999 * 113.47800 * 335.09581 * 15 14 13 41 41 H 1.09003 * 109.46822 * 49.99589 * 17 16 15 42 42 H 1.09004 * 109.47214 * 290.00436 * 17 16 15 43 43 H 0.97004 * 119.99635 * 179.97438 * 21 20 18 44 44 H 1.09001 * 113.48053 * 87.75754 * 26 16 15 45 45 H 1.09006 * 113.47473 * 218.22638 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.3023 0.1144 -0.1183 7 6 5.6792 0.1931 -0.1104 8 6 6.3044 1.4220 0.0078 9 6 5.5542 2.5791 0.1194 10 6 4.1761 2.5145 0.1143 11 6 3.3606 3.7759 0.2364 12 6 2.9012 4.2228 -1.1529 13 8 2.1274 5.4186 -1.0369 14 6 1.6474 5.9235 -2.2846 15 6 1.4807 7.4490 -2.3230 16 7 0.2297 7.2398 -3.0754 17 6 -0.8229 8.1536 -2.6114 18 6 -1.9973 8.0868 -3.5532 19 1 -1.9649 7.4314 -4.4111 20 6 -3.1152 8.8586 -3.3170 21 7 -4.1403 8.7998 -4.1389 22 14 -3.1742 9.9863 -1.8291 23 1 -2.6364 11.3205 -2.1977 24 1 -4.5797 10.1284 -1.3712 25 1 -2.3536 9.4065 -0.7356 26 6 0.1178 5.9260 -2.4150 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.8156 -0.8454 -0.2106 31 1 6.2709 -0.7062 -0.1972 32 1 7.3830 1.4781 0.0130 33 1 6.0486 3.5350 0.2109 34 1 3.9690 4.5598 0.6875 35 1 2.4894 3.5860 0.8635 36 1 2.2928 3.4390 -1.6039 37 1 3.7723 4.4127 -1.7799 38 1 2.1682 5.5096 -3.1480 39 1 2.2545 7.9560 -2.8995 40 1 1.3269 7.8939 -1.3399 41 1 -0.4348 9.1718 -2.5861 42 1 -1.1423 7.8616 -1.6109 43 1 -4.9269 9.3425 -3.9725 44 1 -0.3997 5.9644 -1.4565 45 1 -0.2634 5.1421 -3.0695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224738116.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:33 Heat of formation + Delta-G solvation = -80.655187 kcal Electronic energy + Delta-G solvation = -26246.264650 eV Core-core repulsion = 22422.702886 eV Total energy + Delta-G solvation = -3823.561765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83363 -41.12126 -39.89870 -38.13407 -37.49281 -35.02680 -34.20363 -32.52268 -31.68391 -29.80119 -28.57733 -27.17258 -26.82428 -25.18081 -24.29955 -23.10351 -22.66940 -21.62792 -20.93566 -19.04267 -18.94113 -18.24319 -17.95970 -17.42120 -16.97788 -16.89239 -16.62956 -16.28075 -15.95103 -15.64654 -15.46359 -15.08409 -14.87072 -14.49741 -14.36119 -14.32832 -13.84739 -13.83292 -13.63861 -13.42598 -13.18859 -13.08837 -12.88685 -12.69101 -12.40621 -12.20915 -12.17086 -12.01107 -11.91148 -11.73559 -11.63736 -11.44354 -11.15107 -10.83174 -10.39644 -10.03986 -9.83793 -9.75903 -8.34376 -6.38888 -0.33122 0.33591 1.30097 1.32470 1.43371 1.50148 1.67628 2.29610 2.48644 2.81399 2.97508 3.28764 3.43511 3.63118 3.77641 3.86651 3.90769 4.08460 4.20193 4.24560 4.27367 4.28687 4.34720 4.38428 4.41859 4.45469 4.48564 4.57183 4.63679 4.66739 4.71080 4.77729 4.79937 4.87046 4.91833 4.99372 5.09484 5.31885 5.32327 5.38001 5.47535 5.56151 5.62471 5.90125 5.90400 6.25849 6.47675 6.65945 6.67448 7.24207 8.82755 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.002597 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.181812 B =10778.749060 C =11757.131392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.358 6.358 3 C 0.493 3.507 4 O -0.519 6.519 5 C -0.148 4.148 6 C -0.064 4.064 7 C -0.132 4.132 8 C -0.073 4.073 9 C -0.130 4.130 10 C -0.031 4.031 11 C -0.083 4.083 12 C 0.079 3.921 13 O -0.384 6.384 14 C 0.080 3.920 15 C -0.003 4.003 16 N -0.478 5.478 17 C 0.141 3.859 18 C -0.522 4.522 19 H 0.032 0.968 20 C 0.007 3.993 21 N -0.946 5.946 22 Si 0.951 3.049 23 H -0.259 1.259 24 H -0.277 1.277 25 H -0.255 1.255 26 C -0.013 4.013 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.000 1.000 43 H 0.269 0.731 44 H 0.056 0.944 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.129 -21.406 12.918 35.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.274 6.274 3 C 0.339 3.661 4 O -0.410 6.410 5 C -0.149 4.149 6 C -0.082 4.082 7 C -0.150 4.150 8 C -0.091 4.091 9 C -0.147 4.147 10 C -0.032 4.032 11 C -0.120 4.120 12 C 0.003 3.997 13 O -0.302 6.302 14 C 0.021 3.979 15 C -0.132 4.132 16 N -0.202 5.202 17 C 0.013 3.987 18 C -0.560 4.560 19 H 0.051 0.949 20 C -0.190 4.190 21 N -0.587 5.587 22 Si 0.774 3.226 23 H -0.184 1.184 24 H -0.202 1.202 25 H -0.179 1.179 26 C -0.142 4.142 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.154 0.846 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.181 0.819 33 H 0.169 0.831 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.017 0.983 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.636 -20.893 12.336 34.578 hybrid contribution -1.461 0.531 0.852 1.773 sum 23.175 -20.362 13.188 33.550 Atomic orbital electron populations 1.23513 0.74688 1.05713 1.02247 1.86503 1.24754 1.32043 1.84122 1.21743 0.90088 0.81520 0.72714 1.90906 1.67703 1.36179 1.46183 1.19103 0.88275 0.95808 1.11737 1.21672 0.94867 0.97337 0.94285 1.21579 0.93676 0.99655 1.00055 1.21877 1.02038 0.91588 0.93585 1.21357 0.91424 1.00945 1.01002 1.19849 0.94837 0.92436 0.96050 1.20601 0.99861 0.94501 0.97084 1.22423 0.93849 0.85948 0.97464 1.87891 1.70618 1.42185 1.29508 1.23651 0.92574 0.94297 0.87338 1.24156 0.94656 0.96065 0.98280 1.68770 1.03647 1.03320 1.44420 1.20483 0.90972 0.93424 0.93785 1.21182 0.99705 1.24748 1.10359 0.94946 1.25915 0.94701 0.98513 0.99910 1.70053 1.06742 1.42354 1.39514 0.85659 0.78055 0.79474 0.79457 1.18381 1.20209 1.17901 1.24293 0.98037 0.94253 0.97655 0.92219 0.92671 0.84599 0.83378 0.82019 0.81924 0.83059 0.89217 0.90343 0.94505 0.91861 0.86746 0.87541 0.91319 0.95019 0.98270 0.92208 0.92529 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.57 113.37 1.20 1.73 16 2 O -0.36 -7.35 9.83 -56.16 -0.55 -7.91 16 3 C 0.49 12.04 7.76 70.33 0.55 12.58 16 4 O -0.52 -16.05 11.38 19.93 0.23 -15.82 16 5 C -0.15 -2.92 5.87 -20.10 -0.12 -3.03 16 6 C -0.06 -0.85 9.62 22.54 0.22 -0.63 16 7 C -0.13 -1.11 10.03 22.23 0.22 -0.89 16 8 C -0.07 -0.59 10.04 22.33 0.22 -0.37 16 9 C -0.13 -1.60 9.66 22.23 0.21 -1.39 16 10 C -0.03 -0.59 5.17 -19.60 -0.10 -0.69 16 11 C -0.08 -1.94 4.98 29.85 0.15 -1.79 16 12 C 0.08 2.11 5.29 71.98 0.38 2.49 16 13 O -0.38 -12.56 10.39 -148.98 -1.55 -14.11 16 14 C 0.08 2.69 4.65 30.94 0.14 2.83 16 15 C 0.00 -0.10 7.52 83.57 0.63 0.53 16 16 N -0.48 -21.92 6.32 -933.08 -5.89 -27.81 16 17 C 0.14 7.36 3.64 85.55 0.31 7.67 16 18 C -0.52 -32.48 9.94 25.60 0.25 -32.22 16 19 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 20 C 0.01 0.43 5.47 84.65 0.46 0.90 16 21 N -0.95 -61.47 13.96 21.45 0.30 -61.18 16 22 Si 0.95 46.05 27.47 68.60 1.88 47.94 16 23 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.26 -11.75 6.53 99.48 0.65 -11.10 16 26 C -0.01 -0.54 7.55 83.57 0.63 0.09 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.15 1.57 7.63 -2.91 -0.02 1.55 16 31 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 32 H 0.16 0.27 8.06 -2.91 -0.02 0.25 16 33 H 0.15 1.28 8.05 -2.91 -0.02 1.26 16 34 H 0.09 1.78 8.02 -2.39 -0.02 1.76 16 35 H 0.08 2.26 5.97 -2.39 -0.01 2.24 16 36 H 0.04 1.10 6.56 -2.39 -0.02 1.09 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 3.36 7.88 -2.39 -0.02 3.34 16 39 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.07 2.47 7.91 -2.39 -0.02 2.45 16 41 H 0.03 1.59 7.52 -2.39 -0.02 1.57 16 42 H 0.00 -0.02 6.34 -2.39 -0.02 -0.04 16 43 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 44 H 0.06 2.53 7.42 -2.39 -0.02 2.51 16 45 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -79.43 372.47 0.71 -78.73 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.92 Total: 12.36 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 5.36 Total: -12.19 kcal Atomic # 7 Polarization: -83.39 SS G_CDS: -5.59 Total: -88.99 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.87 Total: -37.84 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.94 kcal Total: -79.43 0.71 -78.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224738116.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.928 kcal (2) G-P(sol) polarization free energy of solvation -79.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds