Wall clock time and date at job start Tue Mar 31 2020 12:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 Si 1.63101 * 114.00307 * 2 1 4 4 C 1.86302 * 109.47019 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47128 * 180.02562 * 5 4 3 7 7 O 1.42899 * 109.46889 * 179.97438 * 6 5 4 8 8 C 1.42905 * 113.99778 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.64086 * 333.14663 * 8 7 6 10 10 C 1.55158 * 110.71993 * 210.00210 * 8 7 6 11 11 C 1.54915 * 101.58041 * 206.13935 * 10 8 7 12 12 N 1.47425 * 104.83255 * 37.00603 * 11 10 8 13 13 C 1.36935 * 125.64335 * 155.83495 * 12 11 10 14 14 H 1.08007 * 119.99442 * 180.02562 * 13 12 11 15 15 C 1.38810 * 120.00251 * 0.02746 * 13 12 11 16 16 N 1.31618 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00068 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47112 * 60.00250 * 17 15 13 19 19 H 1.48500 * 109.47313 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47073 * 300.00494 * 17 15 13 21 21 C 1.47026 * 108.70532 * 335.87490 * 12 11 10 22 22 O 1.63097 * 109.47376 * 59.99727 * 3 2 1 23 23 C 1.42901 * 114.00007 * 60.00117 * 22 3 2 24 24 O 1.63099 * 109.46690 * 299.99251 * 3 2 1 25 25 C 1.42896 * 114.00641 * 300.00381 * 24 3 2 26 26 H 1.08996 * 109.47350 * 300.00748 * 1 2 3 27 27 H 1.09000 * 109.46646 * 60.00276 * 1 2 3 28 28 H 1.08992 * 109.47689 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47046 * 59.99945 * 4 3 2 30 30 H 1.08999 * 109.47436 * 299.99717 * 4 3 2 31 31 H 1.08997 * 109.47213 * 59.99845 * 5 4 3 32 32 H 1.09008 * 109.46725 * 299.99962 * 5 4 3 33 33 H 1.08997 * 109.47286 * 59.99785 * 6 5 4 34 34 H 1.08997 * 109.46848 * 299.99883 * 6 5 4 35 35 H 1.08998 * 111.00213 * 324.20710 * 10 8 7 36 36 H 1.08992 * 111.00346 * 88.06376 * 10 8 7 37 37 H 1.09001 * 110.36581 * 155.84899 * 11 10 8 38 38 H 1.09000 * 110.35992 * 278.16787 * 11 10 8 39 39 H 0.97007 * 119.99820 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.87874 * 241.64015 * 21 12 11 41 41 H 1.08998 * 109.88203 * 120.47129 * 21 12 11 42 42 H 1.09006 * 109.47317 * 300.00072 * 23 22 3 43 43 H 1.08994 * 109.46954 * 59.99989 * 23 22 3 44 44 H 1.09002 * 109.46769 * 180.02562 * 23 22 3 45 45 H 1.08999 * 109.47381 * 180.02562 * 25 24 3 46 46 H 1.09001 * 109.46886 * 300.00262 * 25 24 3 47 47 H 1.08998 * 109.47209 * 59.99530 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 14 2.0924 1.4900 0.0000 4 6 3.9496 1.3427 0.0008 5 6 4.5720 2.7404 0.0001 6 6 6.0972 2.6195 0.0001 7 8 6.6785 3.9249 -0.0011 8 6 8.1076 3.9248 -0.0006 9 1 8.4916 3.0153 0.4613 10 6 8.6563 5.1823 0.7239 11 6 10.0409 5.3503 0.0496 12 7 9.8225 4.9752 -1.3593 13 6 10.5818 5.3873 -2.4217 14 1 10.3385 5.0554 -3.4203 15 6 11.6641 6.2316 -2.2153 16 7 11.9602 6.6364 -0.9984 17 14 12.7003 6.7932 -3.6645 18 1 11.8456 7.5344 -4.6265 19 1 13.7874 7.6818 -3.1810 20 1 13.2920 5.6095 -4.3382 21 6 8.6539 4.0861 -1.4348 22 8 1.6112 2.2994 1.3316 23 6 1.9844 1.6718 2.5600 24 8 1.6113 2.2992 -1.3318 25 6 1.9845 1.6714 -2.5601 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 4.2716 0.8016 -0.8890 30 1 4.2709 0.8020 0.8910 31 1 4.2501 3.2819 0.8896 32 1 4.2507 3.2808 -0.8904 33 1 6.4188 2.0782 -0.8896 34 1 6.4188 2.0790 0.8903 35 1 8.0227 6.0491 0.5361 36 1 8.7620 5.0020 1.7936 37 1 10.3736 6.3859 0.1193 38 1 10.7705 4.6847 0.5107 39 1 12.7168 7.2261 -0.8541 40 1 8.9521 3.1148 -1.8294 41 1 7.8911 4.5301 -2.0744 42 1 1.5400 0.6776 2.6097 43 1 3.0699 1.5873 2.6096 44 1 1.6274 2.2713 3.3974 45 1 1.6284 2.2712 -3.3976 46 1 3.0701 1.5869 -2.6097 47 1 1.5402 0.6773 -2.6097 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224746347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:32 Heat of formation + Delta-G solvation = -233.602885 kcal Electronic energy + Delta-G solvation = -25121.936276 eV Core-core repulsion = 21347.639730 eV Total energy + Delta-G solvation = -3774.296547 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.95157 -38.19699 -37.96752 -37.80122 -37.13339 -34.76768 -33.78243 -31.10431 -28.97082 -27.84811 -27.37478 -26.96050 -26.82889 -25.94876 -22.57082 -22.05026 -21.67285 -18.99634 -18.69966 -17.97845 -17.42726 -17.37831 -16.81058 -16.70356 -16.36886 -16.11354 -15.74212 -15.58988 -15.52081 -15.42676 -15.02726 -14.99623 -14.90686 -14.38961 -14.22952 -13.65264 -13.43441 -13.20715 -12.98700 -12.76097 -12.67722 -12.49406 -12.37267 -12.17542 -12.06963 -11.97668 -11.90250 -11.80752 -11.73218 -11.35227 -11.31090 -11.21689 -11.13847 -10.77675 -10.47902 -10.41316 -8.94656 -7.80443 -5.26385 1.05598 1.45308 1.49509 1.55977 1.97078 2.07579 2.15761 2.46040 2.71703 3.29708 3.67951 3.80766 3.98017 4.05768 4.13807 4.30186 4.31931 4.37652 4.41536 4.48399 4.51374 4.53272 4.54414 4.55602 4.58289 4.62341 4.76719 4.86616 4.90314 4.92258 4.94148 4.95736 4.99242 5.00446 5.04939 5.15838 5.22331 5.41387 5.44374 5.57223 5.74638 5.85608 6.25019 6.34752 7.06503 7.72471 8.36687 9.21604 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027668 B = 0.002229 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.745695 B =12561.304579 C =13232.716078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.686 6.686 3 Si 1.664 2.336 4 C -0.530 4.530 5 C -0.099 4.099 6 C 0.055 3.945 7 O -0.392 6.392 8 C 0.091 3.909 9 H 0.082 0.918 10 C -0.127 4.127 11 C 0.155 3.845 12 N -0.626 5.626 13 C -0.246 4.246 14 H 0.079 0.921 15 C -0.067 4.067 16 N -0.949 5.949 17 Si 0.986 3.014 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.114 3.886 22 O -0.685 6.685 23 C 0.045 3.955 24 O -0.686 6.686 25 C 0.046 3.954 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.092 0.908 37 H 0.079 0.921 38 H -0.003 1.003 39 H 0.250 0.750 40 H 0.026 0.974 41 H 0.024 0.976 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.466 -16.168 5.280 30.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.647 6.647 3 Si 1.700 2.300 4 C -0.604 4.604 5 C -0.137 4.137 6 C -0.021 4.021 7 O -0.312 6.312 8 C 0.033 3.967 9 H 0.100 0.900 10 C -0.166 4.166 11 C 0.030 3.970 12 N -0.353 5.353 13 C -0.374 4.374 14 H 0.097 0.903 15 C -0.259 4.259 16 N -0.598 5.598 17 Si 0.814 3.186 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.012 4.012 22 O -0.646 6.646 23 C -0.049 4.049 24 O -0.647 6.647 25 C -0.048 4.048 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.015 0.985 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -25.569 -15.724 5.236 30.470 hybrid contribution 1.664 0.092 -0.769 1.836 sum -23.904 -15.632 4.467 28.909 Atomic orbital electron populations 1.22365 0.77136 1.04388 1.01273 1.85560 1.24793 1.63951 1.90402 0.72226 0.59874 0.44859 0.53082 1.27886 1.27845 0.98463 1.06218 1.20897 0.92410 0.97394 1.02950 1.22855 0.94622 0.84096 1.00522 1.87908 1.18903 1.29430 1.94911 1.22976 0.80296 0.98989 0.94485 0.89983 1.22996 0.96894 0.96940 0.99735 1.21752 0.91829 1.00995 0.82436 1.44709 1.31437 1.55010 1.04137 1.19431 1.06908 1.23469 0.87634 0.90281 1.25711 1.00074 1.00412 0.99750 1.70025 1.30327 1.39085 1.20404 0.85041 0.77777 0.77798 0.78011 1.20286 1.21577 1.20264 1.21832 0.89392 0.93139 0.96797 1.85420 1.82450 1.66703 1.29984 1.22421 1.00201 0.97659 0.84643 1.85411 1.82463 1.66812 1.29984 1.22396 1.00055 0.97671 0.84723 0.92745 0.92887 0.88312 0.89533 0.89061 0.91085 0.91825 0.93533 0.92301 0.91891 0.88952 0.90341 0.98486 0.94065 0.95630 0.95785 0.91792 0.92510 0.88715 0.88877 0.92783 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.20 113.37 1.16 1.63 16 2 O -0.69 -10.37 8.92 -121.90 -1.09 -11.46 16 3 Si 1.66 28.25 9.84 68.60 0.67 28.92 16 4 C -0.53 -9.58 4.14 71.98 0.30 -9.28 16 5 C -0.10 -2.35 4.96 30.59 0.15 -2.20 16 6 C 0.06 1.52 5.77 71.98 0.42 1.94 16 7 O -0.39 -13.98 10.07 -148.98 -1.50 -15.48 16 8 C 0.09 3.49 3.45 31.78 0.11 3.60 16 9 H 0.08 2.82 7.82 -2.39 -0.02 2.80 16 10 C -0.13 -5.22 6.81 31.99 0.22 -5.00 16 11 C 0.15 8.03 5.89 86.86 0.51 8.54 16 12 N -0.63 -34.51 3.39 -691.96 -2.35 -36.86 16 13 C -0.25 -14.45 10.27 84.03 0.86 -13.59 16 14 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 15 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 16 N -0.95 -57.80 10.09 21.65 0.22 -57.58 16 17 Si 0.99 46.64 29.55 68.60 2.03 48.66 16 18 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 C 0.11 5.23 7.02 86.73 0.61 5.84 16 22 O -0.68 -12.93 8.92 -121.90 -1.09 -14.01 16 23 C 0.04 0.58 10.20 113.37 1.16 1.73 16 24 O -0.69 -13.59 8.92 -121.90 -1.09 -14.68 16 25 C 0.05 0.66 10.20 113.37 1.16 1.82 16 26 H 0.05 0.52 7.83 -2.39 -0.02 0.50 16 27 H 0.05 0.52 7.83 -2.39 -0.02 0.51 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.45 7.48 -2.38 -0.02 1.43 16 30 H 0.09 1.42 7.48 -2.39 -0.02 1.41 16 31 H 0.07 1.68 7.96 -2.39 -0.02 1.66 16 32 H 0.06 1.61 7.97 -2.38 -0.02 1.59 16 33 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 35 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.08 4.58 5.87 -2.39 -0.01 4.57 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.02 1.14 8.06 -2.39 -0.02 1.12 16 42 H 0.06 0.58 7.83 -2.38 -0.02 0.56 16 43 H 0.06 0.64 7.21 -2.39 -0.02 0.62 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 0.73 7.22 -2.39 -0.02 0.71 16 47 H 0.06 0.68 7.83 -2.39 -0.02 0.67 16 Total: -1.00 -72.83 383.16 3.84 -69.00 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.92 Total: 11.93 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 7.11 Total: -8.44 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -2.13 Total: -94.44 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -4.76 Total: -55.63 kcal Atomic # 14 Polarization: 74.89 SS G_CDS: 2.70 Total: 77.59 kcal Total: -72.83 3.84 -69.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224746347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.607 kcal (2) G-P(sol) polarization free energy of solvation -72.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds