Wall clock time and date at job start Tue Mar 31 2020 12:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 Si 1.63098 * 113.99923 * 2 1 4 4 C 1.86304 * 109.47133 * 60.00026 * 3 2 1 5 5 C 1.52997 * 109.47059 * 60.00005 * 4 3 2 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 4 3 7 7 O 1.42895 * 109.47606 * 180.02562 * 6 5 4 8 8 C 1.42904 * 114.00490 * 180.02562 * 7 6 5 9 9 H 1.08996 * 110.88470 * 26.11315 * 8 7 6 10 10 C 1.55151 * 111.00902 * 150.00175 * 8 7 6 11 11 C 1.54315 * 102.94574 * 153.57494 * 10 8 7 12 12 N 1.47029 * 107.27230 * 337.80466 * 11 10 8 13 13 C 1.36937 * 125.64985 * 178.96130 * 12 11 10 14 14 H 1.07997 * 119.99541 * 179.97438 * 13 12 11 15 15 C 1.38805 * 120.00105 * 359.97438 * 13 12 11 16 16 N 1.31622 * 120.00074 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00170 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46722 * 89.99384 * 17 15 13 19 19 H 1.48498 * 109.47285 * 209.99617 * 17 15 13 20 20 H 1.48501 * 109.46952 * 329.99981 * 17 15 13 21 21 C 1.47428 * 108.69711 * 358.93928 * 12 11 10 22 22 O 1.63104 * 109.47170 * 300.00493 * 3 2 1 23 23 C 1.42899 * 113.99616 * 299.99703 * 22 3 2 24 24 O 1.63099 * 109.47422 * 180.02562 * 3 2 1 25 25 C 1.42898 * 114.00244 * 179.97438 * 24 3 2 26 26 H 1.08997 * 109.47171 * 299.99829 * 1 2 3 27 27 H 1.08997 * 109.47442 * 60.00025 * 1 2 3 28 28 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47281 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47312 * 300.00283 * 4 3 2 31 31 H 1.09002 * 109.47153 * 300.00175 * 5 4 3 32 32 H 1.08998 * 109.47533 * 59.99804 * 5 4 3 33 33 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 34 34 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 35 35 H 1.09001 * 110.71887 * 271.93724 * 10 8 7 36 36 H 1.09001 * 110.72415 * 35.02904 * 10 8 7 37 37 H 1.08997 * 109.88934 * 97.22330 * 11 10 8 38 38 H 1.09004 * 109.88543 * 218.23494 * 11 10 8 39 39 H 0.97003 * 119.99962 * 180.02562 * 16 15 13 40 40 H 1.09000 * 110.36884 * 265.28893 * 21 12 11 41 41 H 1.09000 * 110.36007 * 142.96681 * 21 12 11 42 42 H 1.08996 * 109.47274 * 59.99872 * 23 22 3 43 43 H 1.09003 * 109.46966 * 180.02562 * 23 22 3 44 44 H 1.09007 * 109.47230 * 299.99818 * 23 22 3 45 45 H 1.08998 * 109.47485 * 300.00076 * 25 24 3 46 46 H 1.08995 * 109.46963 * 60.00236 * 25 24 3 47 47 H 1.09002 * 109.47305 * 180.02562 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 14 2.0923 1.4900 0.0000 4 6 1.5426 2.4145 1.5212 5 6 1.9941 1.6552 2.7704 6 6 1.5433 2.4147 4.0196 7 8 1.9654 1.7059 5.1864 8 6 1.5922 2.3336 6.4147 9 1 0.7035 2.9505 6.2816 10 6 1.3762 1.2812 7.5340 11 6 1.6686 2.0805 8.8212 12 7 2.5049 3.2286 8.4417 13 6 2.9663 4.1963 9.2937 14 1 3.5773 5.0024 8.9151 15 6 2.6487 4.1411 10.6438 16 7 1.9037 3.1589 11.1050 17 14 3.2787 5.4607 11.8062 18 1 2.2948 6.5709 11.8745 19 1 3.4646 4.8800 13.1603 20 1 4.5775 5.9804 11.3079 21 6 2.7649 3.1652 6.9919 22 8 1.6110 2.2994 -1.3317 23 6 1.9842 1.6717 -2.5599 24 8 3.7182 1.3613 -0.0007 25 6 4.4007 2.6168 -0.0013 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.9856 3.4105 1.5210 30 1 0.4560 2.5005 1.5212 31 1 1.5508 0.6595 2.7704 32 1 3.0807 1.5691 2.7704 33 1 1.9869 3.4104 4.0194 34 1 0.4567 2.5011 4.0199 35 1 0.3480 0.9194 7.5299 36 1 2.0756 0.4523 7.4243 37 1 0.7346 2.4313 9.2601 38 1 2.2003 1.4517 9.5354 39 1 1.6815 3.1206 12.0485 40 1 3.7148 2.6668 6.7982 41 1 2.7668 4.1671 6.5627 42 1 1.5400 0.6776 -2.6096 43 1 1.6280 2.2716 -3.3975 44 1 3.0699 1.5874 -2.6097 45 1 4.1224 3.1812 -0.8913 46 1 4.1232 3.1816 0.8886 47 1 5.4771 2.4452 -0.0022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224746349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:38 Heat of formation + Delta-G solvation = -214.589159 kcal Electronic energy + Delta-G solvation = -25097.719256 eV Core-core repulsion = 21324.247207 eV Total energy + Delta-G solvation = -3773.472050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.34029 -37.55051 -37.37667 -36.58922 -36.04551 -33.43984 -31.96012 -29.14918 -27.39428 -27.05359 -26.82230 -26.40043 -25.54251 -24.13249 -21.48008 -20.19620 -19.97385 -18.06485 -16.93264 -16.78060 -16.74797 -16.51016 -15.74372 -15.64186 -15.07436 -14.93555 -14.91404 -14.63021 -14.48771 -14.39770 -14.34032 -13.86599 -13.39641 -13.15015 -12.40669 -12.21258 -12.01959 -11.98380 -11.75470 -11.55707 -11.42838 -11.28675 -11.02596 -10.90288 -10.77410 -10.73058 -10.64595 -10.58860 -10.51344 -10.19829 -10.07802 -9.75118 -9.68909 -9.59631 -8.97432 -8.57301 -6.80596 -5.68620 -3.02529 1.66901 2.61998 2.73038 2.81549 3.41672 3.46212 3.48707 4.02689 4.53811 4.86515 4.88315 4.93448 4.96102 4.98997 5.03608 5.06871 5.22631 5.29211 5.33025 5.39474 5.41859 5.44656 5.48517 5.49344 5.56636 5.58500 5.66530 5.75691 5.82545 5.89177 5.96392 6.14046 6.22943 6.36077 6.44761 6.53084 6.59994 6.74122 6.79107 7.58281 7.65435 7.72193 7.86213 8.28370 9.24231 9.84371 10.50728 11.43148 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.028464 B = 0.002198 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.452789 B =12734.942050 C =13329.499243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.665 6.665 3 Si 1.651 2.349 4 C -0.530 4.530 5 C -0.100 4.100 6 C 0.065 3.935 7 O -0.382 6.382 8 C 0.072 3.928 9 H 0.065 0.935 10 C -0.140 4.140 11 C 0.179 3.821 12 N -0.605 5.605 13 C -0.227 4.227 14 H 0.078 0.922 15 C -0.010 4.010 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.120 3.880 22 O -0.681 6.681 23 C 0.057 3.943 24 O -0.665 6.665 25 C 0.060 3.940 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.252 0.748 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.048 0.952 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 -4.222 -28.883 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 O -0.626 6.626 3 Si 1.688 2.312 4 C -0.605 4.605 5 C -0.137 4.137 6 C -0.012 4.012 7 O -0.300 6.300 8 C 0.014 3.986 9 H 0.083 0.917 10 C -0.178 4.178 11 C 0.054 3.946 12 N -0.333 5.333 13 C -0.355 4.355 14 H 0.096 0.904 15 C -0.206 4.206 16 N -0.571 5.571 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.207 1.207 21 C -0.007 4.007 22 O -0.642 6.642 23 C -0.038 4.038 24 O -0.626 6.626 25 C -0.035 4.035 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.182 -4.546 -28.705 29.145 hybrid contribution -0.121 1.382 1.184 1.824 sum -2.302 -3.165 -27.521 27.798 Atomic orbital electron populations 1.22142 0.77276 1.03577 1.00499 1.85409 1.23891 1.62180 1.91075 0.72571 0.51695 0.48523 0.58456 1.27826 1.06892 1.09812 1.15931 1.20881 1.01992 0.99221 0.91645 1.22534 0.97807 0.95254 0.85588 1.87866 1.79351 1.49478 1.13337 1.23401 0.97139 0.94978 0.83127 0.91726 1.23004 1.00706 0.98156 0.95957 1.21152 0.95473 0.87473 0.90491 1.44372 1.59862 1.27473 1.01557 1.19067 1.26051 1.01928 0.88472 0.90427 1.24822 1.00307 0.98613 0.96869 1.69966 1.41430 1.32154 1.13515 0.86087 0.78304 0.80751 0.80428 1.21633 1.21641 1.20694 1.21895 0.95590 0.96797 0.86399 1.85579 1.82140 1.66950 1.29515 1.22104 0.99295 0.96794 0.85624 1.85403 1.48713 1.37392 1.91054 1.22152 0.98621 0.82216 1.00535 0.93088 0.93433 0.89668 0.90074 0.90181 0.91058 0.90932 0.93736 0.93986 0.91993 0.91470 0.93431 0.93589 0.93734 0.95429 0.94600 0.93381 0.90108 0.93362 0.93435 0.93006 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.20 101.05 1.03 1.46 16 2 O -0.67 -6.62 8.92 -63.55 -0.57 -7.19 16 3 Si 1.65 15.01 9.83 -169.99 -1.67 13.33 16 4 C -0.53 -5.23 4.14 37.16 0.15 -5.07 16 5 C -0.10 -1.24 4.96 -26.74 -0.13 -1.37 16 6 C 0.07 0.95 5.77 37.15 0.21 1.17 16 7 O -0.38 -6.96 10.15 -35.23 -0.36 -7.32 16 8 C 0.07 1.43 3.55 -24.58 -0.09 1.34 16 9 H 0.06 1.24 7.83 -51.93 -0.41 0.83 16 10 C -0.14 -2.89 6.69 -24.90 -0.17 -3.05 16 11 C 0.18 4.57 5.37 -3.06 -0.02 4.55 16 12 N -0.60 -16.35 3.40 -170.07 -0.58 -16.93 16 13 C -0.23 -6.56 10.28 -15.06 -0.15 -6.72 16 14 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 15 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 16 N -0.92 -27.77 10.31 55.49 0.57 -27.19 16 17 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.12 2.72 6.97 -2.53 -0.02 2.71 16 22 O -0.68 -5.77 8.92 -63.56 -0.57 -6.33 16 23 C 0.06 0.36 10.20 101.05 1.03 1.39 16 24 O -0.67 -6.77 8.92 -63.56 -0.57 -7.34 16 25 C 0.06 0.45 10.20 101.05 1.03 1.48 16 26 H 0.05 0.33 7.21 -51.93 -0.37 -0.04 16 27 H 0.05 0.26 7.83 -51.93 -0.41 -0.14 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.75 7.48 -51.93 -0.39 0.36 16 30 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 31 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 32 H 0.07 0.92 7.97 -51.93 -0.41 0.50 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 37 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 38 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.27 7.83 -51.93 -0.41 -0.14 16 43 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.05 0.27 7.83 -51.92 -0.41 -0.13 16 45 H 0.05 0.28 7.83 -51.93 -0.41 -0.13 16 46 H 0.05 0.37 7.22 -51.93 -0.37 -0.01 16 47 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -34.07 383.86 -8.69 -42.77 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -8.51 Total: -4.61 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 2.79 Total: -2.49 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.01 Total: -44.13 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -2.06 Total: -28.18 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: -6.70 Total: 30.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.07 -8.69 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224746349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.824 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds