Wall clock time and date at job start Tue Mar 31 2020 12:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99784 * 2 1 4 4 O 1.20822 * 119.99908 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99817 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46903 * 180.02562 * 5 3 2 7 7 C 1.50709 * 109.47033 * 179.97438 * 6 5 3 8 8 C 1.38264 * 119.94404 * 89.99671 * 7 6 5 9 9 C 1.38142 * 120.05668 * 180.02562 * 8 7 6 10 10 C 1.38741 * 119.94297 * 0.02562 * 9 8 7 11 11 O 1.35901 * 120.05508 * 180.02562 * 10 9 8 12 12 C 1.42900 * 116.99974 * 5.72810 * 11 10 9 13 13 C 1.53510 * 114.16707 * 156.74376 * 12 11 10 14 14 N 1.47483 * 87.93037 * 87.81555 * 13 12 11 15 15 C 1.46898 * 111.00155 * 138.70289 * 14 13 12 16 16 C 1.50701 * 109.47311 * 169.99454 * 15 14 13 17 17 H 1.08003 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99919 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47075 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47314 * 299.99913 * 20 18 16 23 23 H 1.48501 * 109.47174 * 60.00197 * 20 18 16 24 24 C 1.47475 * 87.83687 * 27.00739 * 14 13 12 25 25 C 1.38735 * 119.88439 * 0.27276 * 10 9 8 26 26 C 1.38142 * 119.94729 * 359.47449 * 25 10 9 27 27 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46968 * 299.99403 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00238 * 1 2 3 30 30 H 1.09000 * 109.47378 * 59.99848 * 5 3 2 31 31 H 1.09004 * 109.47024 * 299.99879 * 5 3 2 32 32 H 1.09000 * 109.47406 * 59.99647 * 6 5 3 33 33 H 1.09000 * 109.47425 * 299.99458 * 6 5 3 34 34 H 1.07997 * 119.97514 * 0.02562 * 8 7 6 35 35 H 1.08000 * 120.02901 * 179.97438 * 9 8 7 36 36 H 1.09004 * 113.25747 * 23.79384 * 12 11 10 37 37 H 1.08998 * 113.47868 * 333.04577 * 13 12 11 38 38 H 1.08998 * 113.47371 * 202.57555 * 13 12 11 39 39 H 1.09005 * 109.46892 * 49.99721 * 15 14 13 40 40 H 1.08997 * 109.47313 * 289.99504 * 15 14 13 41 41 H 0.96999 * 120.00182 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.47843 * 87.76268 * 24 14 13 43 43 H 1.09007 * 113.47722 * 218.22539 * 24 14 13 44 44 H 1.08004 * 120.02399 * 179.72335 * 25 10 9 45 45 H 1.07998 * 119.97365 * 180.23424 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 6 5.5050 2.8210 0.0002 8 6 6.1943 2.8577 -1.1978 9 6 7.5738 2.9295 -1.2005 10 6 8.2678 2.9642 0.0004 11 8 9.6249 3.0354 0.0004 12 6 10.2661 3.1980 -1.2663 13 6 11.6672 3.8199 -1.1862 14 7 12.2033 2.4577 -1.0073 15 6 13.4374 2.2716 -1.7821 16 6 14.0859 0.9693 -1.3890 17 1 13.6269 0.3423 -0.6388 18 6 15.2645 0.5777 -1.9875 19 7 15.8232 1.3409 -2.9013 20 14 16.0679 -1.0370 -1.5007 21 1 17.3148 -1.2256 -2.2847 22 1 16.3926 -1.0112 -0.0519 23 1 15.1345 -2.1580 -1.7789 24 6 11.0318 1.9592 -1.7515 25 6 7.5741 2.9210 1.2011 26 6 6.1943 2.8545 1.1984 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 3.6106 3.2357 0.8906 33 1 3.6100 3.2368 -0.8893 34 1 5.6537 2.8302 -2.1324 35 1 8.1117 2.9577 -2.1366 36 1 9.6206 3.6477 -2.0208 37 1 11.8091 4.4603 -0.3156 38 1 11.9858 4.2934 -2.1149 39 1 14.1223 3.0947 -1.5778 40 1 13.1994 2.2524 -2.8456 41 1 16.6522 1.0652 -3.3228 42 1 11.1808 1.9360 -2.8311 43 1 10.6350 1.0224 -1.3600 44 1 8.1123 2.9435 2.1372 45 1 5.6537 2.8247 2.1329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227905201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:30 Heat of formation + Delta-G solvation = -60.151207 kcal Electronic energy + Delta-G solvation = -25168.692349 eV Core-core repulsion = 21346.019704 eV Total energy + Delta-G solvation = -3822.672645 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88565 -40.47914 -39.09867 -37.20898 -36.73433 -33.85747 -32.85634 -31.15246 -29.95108 -29.16886 -27.85722 -25.67137 -25.37820 -24.66137 -23.17158 -21.83582 -21.41238 -20.75759 -19.50187 -18.16376 -17.87505 -17.05600 -16.94190 -16.38355 -16.02263 -15.49530 -15.36650 -14.87921 -14.79956 -14.37766 -14.27775 -14.00527 -13.62094 -13.54318 -13.43792 -13.17733 -13.07979 -12.78563 -12.43367 -12.13380 -11.99371 -11.67466 -11.58399 -11.49854 -11.32614 -11.21295 -10.94667 -10.87079 -10.78373 -10.50463 -10.35154 -10.05385 -9.69008 -9.29735 -9.08602 -8.44787 -8.07053 -7.88475 -6.05191 -4.06341 1.25776 1.30249 1.81446 2.34713 3.21747 3.33551 3.36837 3.40886 3.64828 4.28640 4.41323 4.54347 4.63981 4.65170 4.67784 4.74847 4.75682 4.79449 4.84682 4.87314 5.09657 5.14430 5.17110 5.25638 5.28039 5.30117 5.44783 5.65513 5.71466 5.80502 5.84211 5.92991 5.98192 6.04536 6.12774 6.21057 6.29541 6.34416 6.48304 6.57841 6.74736 7.11063 7.34122 7.57723 7.61971 7.83383 8.07276 8.43078 9.01068 9.57895 11.05831 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.001906 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.488316 B =14684.063805 C =15439.519433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.460 3.540 4 O -0.509 6.509 5 C -0.110 4.110 6 C -0.059 4.059 7 C -0.137 4.137 8 C -0.072 4.072 9 C -0.209 4.209 10 C 0.141 3.859 11 O -0.276 6.276 12 C 0.044 3.956 13 C 0.000 4.000 14 N -0.456 5.456 15 C 0.156 3.844 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.276 1.276 23 H -0.277 1.277 24 C -0.005 4.005 25 C -0.153 4.153 26 C -0.074 4.074 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.030 0.970 40 H 0.004 0.996 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.131 0.869 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.420 1.903 4.062 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.397 6.397 5 C -0.148 4.148 6 C -0.097 4.097 7 C -0.137 4.137 8 C -0.090 4.090 9 C -0.228 4.228 10 C 0.094 3.906 11 O -0.188 6.188 12 C -0.013 4.013 13 C -0.129 4.129 14 N -0.179 5.179 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.081 0.919 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.728 3.272 21 H -0.213 1.213 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.135 4.135 25 C -0.172 4.172 26 C -0.092 4.092 27 H 0.119 0.881 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.149 0.851 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.132 1.926 4.762 28.598 hybrid contribution 0.329 -0.572 -0.972 1.175 sum -27.804 1.353 3.790 28.093 Atomic orbital electron populations 1.23273 0.76302 1.03761 1.02563 1.86530 1.23519 1.33659 1.84077 1.23975 0.92407 0.81238 0.72021 1.90677 1.67368 1.36347 1.45289 1.21488 0.86700 1.00097 1.06488 1.20273 0.91380 0.93655 1.04369 1.19550 0.94660 1.06192 0.93321 1.20799 0.93295 0.97437 0.97484 1.21326 0.95214 1.08598 0.97661 1.19204 0.83178 0.94138 0.94041 1.86196 1.15479 1.86018 1.31083 1.23718 0.93645 0.99598 0.84325 1.24005 0.90913 0.96079 1.01946 1.69092 1.02440 1.03536 1.42837 1.20306 0.87127 0.98314 0.91261 1.21059 1.06863 1.04445 1.21989 0.91864 1.25004 0.97061 0.97549 0.95092 1.69943 1.19517 1.37715 1.26878 0.86519 0.78482 0.83547 0.78639 1.21336 1.20108 1.20246 1.24242 0.93118 0.98031 0.98103 1.20449 0.93653 1.06533 0.96561 1.20802 0.92979 0.97868 0.97555 0.88056 0.91872 0.91877 0.87325 0.87308 0.90227 0.90270 0.85966 0.85061 0.89635 0.89687 0.90427 0.95155 0.97833 0.92854 0.90597 0.89974 0.85085 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.90 10.57 -39.26 -0.41 -3.31 16 3 C 0.46 3.96 7.96 36.01 0.29 4.24 16 4 O -0.51 -5.71 15.73 -18.75 -0.29 -6.01 16 5 C -0.11 -0.73 5.79 -27.89 -0.16 -0.89 16 6 C -0.06 -0.45 4.63 -27.88 -0.13 -0.58 16 7 C -0.14 -1.25 5.14 -104.60 -0.54 -1.79 16 8 C -0.07 -0.71 9.69 -39.61 -0.38 -1.09 16 9 C -0.21 -2.45 9.03 -39.43 -0.36 -2.81 16 10 C 0.14 1.91 6.68 -39.21 -0.26 1.65 16 11 O -0.28 -4.47 10.19 -19.43 -0.20 -4.67 16 12 C 0.04 0.68 4.06 -26.20 -0.11 0.58 16 13 C 0.00 0.00 7.52 -7.54 -0.06 -0.06 16 14 N -0.46 -10.06 6.32 -246.12 -1.55 -11.61 16 15 C 0.16 4.06 4.57 -4.98 -0.02 4.04 16 16 C -0.50 -14.52 9.39 -34.44 -0.32 -14.85 16 17 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 20 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.01 -0.10 7.56 -7.55 -0.06 -0.16 16 25 C -0.15 -1.82 9.99 -39.43 -0.39 -2.21 16 26 C -0.07 -0.71 9.69 -39.61 -0.38 -1.09 16 27 H 0.10 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.61 8.04 -51.93 -0.42 0.19 16 33 H 0.08 0.61 8.04 -51.93 -0.42 0.20 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.42 5.89 -52.49 -0.31 1.12 16 36 H 0.09 1.08 5.90 -51.93 -0.31 0.77 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.27 7.91 -51.93 -0.41 0.86 16 39 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 43 H 0.08 1.54 8.14 -51.92 -0.42 1.12 16 44 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -33.53 380.52 -9.75 -43.28 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.82 Total: -1.96 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.92 Total: -12.30 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.82 Total: -37.65 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.91 Total: -13.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.53 -9.75 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227905201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds