Wall clock time and date at job start Tue Mar 31 2020 12:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99784 * 2 1 4 4 O 1.20822 * 119.99908 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99817 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.46903 * 180.02562 * 5 3 2 7 7 C 1.50709 * 109.47033 * 179.97438 * 6 5 3 8 8 C 1.38264 * 119.94404 * 89.99671 * 7 6 5 9 9 C 1.38142 * 120.05668 * 180.02562 * 8 7 6 10 10 C 1.38741 * 119.94297 * 0.02562 * 9 8 7 11 11 O 1.35901 * 120.05508 * 180.02562 * 10 9 8 12 12 C 1.42900 * 116.99974 * 5.72810 * 11 10 9 13 13 C 1.53510 * 114.16707 * 156.74376 * 12 11 10 14 14 N 1.47483 * 87.93037 * 87.81555 * 13 12 11 15 15 C 1.46898 * 111.00155 * 138.70289 * 14 13 12 16 16 C 1.50701 * 109.47311 * 169.99454 * 15 14 13 17 17 H 1.08003 * 119.99742 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00404 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99919 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47075 * 179.97438 * 20 18 16 22 22 H 1.48495 * 109.47314 * 299.99913 * 20 18 16 23 23 H 1.48501 * 109.47174 * 60.00197 * 20 18 16 24 24 C 1.47475 * 87.83687 * 27.00739 * 14 13 12 25 25 C 1.38735 * 119.88439 * 0.27276 * 10 9 8 26 26 C 1.38142 * 119.94729 * 359.47449 * 25 10 9 27 27 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46968 * 299.99403 * 1 2 3 29 29 H 1.08998 * 109.47349 * 60.00238 * 1 2 3 30 30 H 1.09000 * 109.47378 * 59.99848 * 5 3 2 31 31 H 1.09004 * 109.47024 * 299.99879 * 5 3 2 32 32 H 1.09000 * 109.47406 * 59.99647 * 6 5 3 33 33 H 1.09000 * 109.47425 * 299.99458 * 6 5 3 34 34 H 1.07997 * 119.97514 * 0.02562 * 8 7 6 35 35 H 1.08000 * 120.02901 * 179.97438 * 9 8 7 36 36 H 1.09004 * 113.25747 * 23.79384 * 12 11 10 37 37 H 1.08998 * 113.47868 * 333.04577 * 13 12 11 38 38 H 1.08998 * 113.47371 * 202.57555 * 13 12 11 39 39 H 1.09005 * 109.46892 * 49.99721 * 15 14 13 40 40 H 1.08997 * 109.47313 * 289.99504 * 15 14 13 41 41 H 0.96999 * 120.00182 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.47843 * 87.76268 * 24 14 13 43 43 H 1.09007 * 113.47722 * 218.22539 * 24 14 13 44 44 H 1.08004 * 120.02399 * 179.72335 * 25 10 9 45 45 H 1.07998 * 119.97365 * 180.23424 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0000 2.7421 0.0002 7 6 5.5050 2.8210 0.0002 8 6 6.1943 2.8577 -1.1978 9 6 7.5738 2.9295 -1.2005 10 6 8.2678 2.9642 0.0004 11 8 9.6249 3.0354 0.0004 12 6 10.2661 3.1980 -1.2663 13 6 11.6672 3.8199 -1.1862 14 7 12.2033 2.4577 -1.0073 15 6 13.4374 2.2716 -1.7821 16 6 14.0859 0.9693 -1.3890 17 1 13.6269 0.3423 -0.6388 18 6 15.2645 0.5777 -1.9875 19 7 15.8232 1.3409 -2.9013 20 14 16.0679 -1.0370 -1.5007 21 1 17.3148 -1.2256 -2.2847 22 1 16.3926 -1.0112 -0.0519 23 1 15.1345 -2.1580 -1.7789 24 6 11.0318 1.9592 -1.7515 25 6 7.5741 2.9210 1.2011 26 6 6.1943 2.8545 1.1984 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7806 0.8892 32 1 3.6106 3.2357 0.8906 33 1 3.6100 3.2368 -0.8893 34 1 5.6537 2.8302 -2.1324 35 1 8.1117 2.9577 -2.1366 36 1 9.6206 3.6477 -2.0208 37 1 11.8091 4.4603 -0.3156 38 1 11.9858 4.2934 -2.1149 39 1 14.1223 3.0947 -1.5778 40 1 13.1994 2.2524 -2.8456 41 1 16.6522 1.0652 -3.3228 42 1 11.1808 1.9360 -2.8311 43 1 10.6350 1.0224 -1.3600 44 1 8.1123 2.9435 2.1372 45 1 5.6537 2.8247 2.1329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227905201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:29 Heat of formation + Delta-G solvation = -81.490295 kcal Electronic energy + Delta-G solvation = -25169.617682 eV Core-core repulsion = 21346.019704 eV Total energy + Delta-G solvation = -3823.597978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72660 -41.46936 -40.20736 -38.19508 -37.52451 -35.07042 -34.50962 -32.01322 -31.25474 -30.37035 -28.42764 -27.39220 -26.86503 -25.43581 -24.36846 -23.19599 -22.46624 -21.47349 -20.67311 -19.12950 -18.66778 -18.52759 -17.67221 -17.53198 -17.20457 -16.90386 -16.39825 -16.23537 -15.81235 -15.71767 -15.19902 -15.03641 -14.88227 -14.51583 -14.30588 -14.23074 -13.92112 -13.82436 -13.62333 -13.49983 -13.03788 -12.98657 -12.83310 -12.56130 -12.38588 -12.31738 -12.23286 -12.08134 -11.79945 -11.71247 -11.55646 -11.45789 -11.36078 -11.22895 -10.62682 -9.89751 -9.61012 -8.98814 -8.24300 -6.34447 0.43844 0.46767 1.18372 1.38720 1.41968 1.50286 1.81696 2.11166 2.38362 2.81588 3.07572 3.32329 3.33951 3.69909 3.76898 3.91300 4.00864 4.03479 4.18707 4.24261 4.29609 4.33834 4.35152 4.43096 4.50210 4.51629 4.59303 4.60638 4.65550 4.70641 4.73907 4.88647 4.93480 4.95455 5.03388 5.15258 5.18852 5.37754 5.44320 5.48092 5.56113 5.71398 5.76591 5.92384 6.06380 6.42752 6.55733 6.72806 6.78959 7.34984 8.86292 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.001906 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.488316 B =14684.063805 C =15439.519433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.462 3.538 4 O -0.541 6.541 5 C -0.106 4.106 6 C -0.054 4.054 7 C -0.125 4.125 8 C -0.073 4.073 9 C -0.215 4.215 10 C 0.107 3.893 11 O -0.301 6.301 12 C 0.072 3.928 13 C -0.003 4.003 14 N -0.487 5.487 15 C 0.172 3.828 16 C -0.530 4.530 17 H 0.054 0.946 18 C 0.004 3.996 19 N -0.931 5.931 20 Si 0.969 3.031 21 H -0.278 1.278 22 H -0.271 1.271 23 H -0.268 1.268 24 C -0.008 4.008 25 C -0.166 4.166 26 C -0.071 4.071 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.003 0.997 40 H -0.011 1.011 41 H 0.266 0.734 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.129 0.871 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.390 1.029 4.135 30.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.307 3.693 4 O -0.431 6.431 5 C -0.143 4.143 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.091 4.091 9 C -0.233 4.233 10 C 0.062 3.938 11 O -0.215 6.215 12 C 0.015 3.985 13 C -0.132 4.132 14 N -0.210 5.210 15 C 0.045 3.955 16 C -0.568 4.568 17 H 0.072 0.928 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.793 3.207 21 H -0.203 1.203 22 H -0.196 1.196 23 H -0.193 1.193 24 C -0.137 4.137 25 C -0.184 4.184 26 C -0.089 4.089 27 H 0.146 0.854 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.021 0.979 40 H 0.006 0.994 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.147 0.853 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -30.130 1.045 4.844 30.535 hybrid contribution 0.771 -0.288 -0.953 1.259 sum -29.359 0.757 3.891 29.626 Atomic orbital electron populations 1.23514 0.75060 1.05531 1.02462 1.86523 1.24858 1.33348 1.83730 1.24307 0.93048 0.80915 0.70999 1.90666 1.68185 1.37289 1.46934 1.21507 0.85424 0.99583 1.07813 1.20222 0.89987 0.94436 1.04504 1.19756 0.95462 1.04377 0.92973 1.21098 0.92660 0.96500 0.98831 1.21454 0.96100 1.08582 0.97169 1.19495 0.82149 0.96640 0.95478 1.86146 1.17320 1.86851 1.31169 1.23434 0.93170 0.96839 0.85079 1.24081 0.92221 0.94173 1.02680 1.68993 1.01967 1.07001 1.43013 1.19973 0.88554 0.96282 0.90732 1.21378 1.07698 1.05603 1.22137 0.92821 1.25894 0.97488 1.01227 0.94846 1.70051 1.19935 1.39471 1.27658 0.85443 0.77700 0.79094 0.78432 1.20337 1.19620 1.19264 1.24269 0.92249 0.99163 0.98067 1.20634 0.94689 1.06959 0.96143 1.21085 0.92099 0.96775 0.98969 0.85429 0.91979 0.92029 0.85990 0.85890 0.90139 0.90248 0.83588 0.84441 0.86043 0.89475 0.89189 0.97879 0.99356 0.92523 0.90105 0.90850 0.85293 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.23 10.57 -51.42 -0.54 -5.77 16 3 C 0.46 7.10 7.96 71.24 0.57 7.67 16 4 O -0.54 -11.44 15.73 21.98 0.35 -11.09 16 5 C -0.11 -1.11 5.79 29.85 0.17 -0.94 16 6 C -0.05 -0.67 4.63 29.85 0.14 -0.53 16 7 C -0.13 -1.95 5.14 -19.85 -0.10 -2.05 16 8 C -0.07 -1.23 9.69 22.25 0.22 -1.01 16 9 C -0.21 -4.62 9.03 22.37 0.20 -4.41 16 10 C 0.11 2.82 6.68 22.51 0.15 2.97 16 11 O -0.30 -9.72 10.19 -92.44 -0.94 -10.66 16 12 C 0.07 2.17 4.06 30.94 0.13 2.29 16 13 C 0.00 -0.09 7.52 83.57 0.63 0.54 16 14 N -0.49 -22.02 6.32 -932.96 -5.89 -27.92 16 15 C 0.17 9.26 4.57 85.56 0.39 9.66 16 16 C -0.53 -31.25 9.39 25.60 0.24 -31.01 16 17 H 0.05 3.19 7.81 -2.91 -0.02 3.16 16 18 C 0.00 0.22 5.46 84.65 0.46 0.68 16 19 N -0.93 -56.12 13.29 21.44 0.28 -55.84 16 20 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C -0.01 -0.30 7.56 83.58 0.63 0.33 16 25 C -0.17 -3.77 9.99 22.37 0.22 -3.54 16 26 C -0.07 -1.21 9.69 22.25 0.22 -1.00 16 27 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.08 1.02 8.04 -2.39 -0.02 1.00 16 33 H 0.08 1.02 8.04 -2.39 -0.02 1.00 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.14 2.68 5.89 -2.91 -0.02 2.66 16 36 H 0.12 2.80 5.90 -2.38 -0.01 2.79 16 37 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 2.93 7.91 -2.39 -0.02 2.91 16 39 H 0.00 0.18 8.08 -2.38 -0.02 0.16 16 40 H -0.01 -0.63 7.30 -2.39 -0.02 -0.65 16 41 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.08 2.90 7.42 -2.39 -0.02 2.88 16 43 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 44 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -73.65 380.52 1.72 -71.93 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.98 Total: 11.12 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 5.46 Total: -18.90 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -5.61 Total: -83.75 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -1.14 Total: -27.53 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -73.65 1.72 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227905201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.560 kcal (2) G-P(sol) polarization free energy of solvation -73.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds