Wall clock time and date at job start Tue Mar 31 2020 12:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34750 * 117.00052 * 2 1 4 4 O 1.21501 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.47396 * 119.99583 * 179.97438 * 3 2 1 6 6 C 1.39773 * 120.20223 * 0.25024 * 5 3 2 7 7 C 1.37766 * 119.90387 * 180.29683 * 6 5 3 8 8 C 1.50695 * 119.84333 * 179.74591 * 7 6 5 9 9 N 1.46900 * 109.47466 * 269.97750 * 8 7 6 10 10 C 1.46846 * 110.99821 * 66.04884 * 9 8 7 11 11 C 1.53035 * 109.52273 * 174.16211 * 10 9 8 12 12 C 1.53119 * 109.28026 * 59.18452 * 11 10 9 13 13 C 1.53124 * 109.15595 * 302.34179 * 12 11 10 14 14 H 1.09002 * 109.50319 * 297.71845 * 13 12 11 15 15 C 1.50695 * 109.50402 * 177.63498 * 13 12 11 16 16 H 1.07998 * 120.00340 * 240.00055 * 15 13 12 17 17 C 1.37883 * 119.99944 * 59.99923 * 15 13 12 18 18 N 1.31518 * 119.99999 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00052 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47054 * 90.00455 * 19 17 15 21 21 H 1.48498 * 109.47066 * 210.00203 * 19 17 15 22 22 H 1.48504 * 109.47350 * 330.00248 * 19 17 15 23 23 C 1.46851 * 110.99894 * 301.84067 * 9 8 7 24 24 C 1.38559 * 120.30685 * 359.72934 * 7 6 5 25 25 C 1.38054 * 120.40692 * 359.97068 * 24 7 6 26 26 C 1.38709 * 120.08517 * 0.04995 * 25 24 7 27 27 O 1.35645 * 120.15060 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.47025 * 59.99865 * 1 2 3 29 29 H 1.08997 * 109.47512 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47101 * 300.00603 * 1 2 3 31 31 H 1.08002 * 120.04737 * 0.02562 * 6 5 3 32 32 H 1.08993 * 109.47505 * 29.98313 * 8 7 6 33 33 H 1.09002 * 109.47126 * 149.98147 * 8 7 6 34 34 H 1.09000 * 109.46165 * 294.17887 * 10 9 8 35 35 H 1.09003 * 109.46148 * 54.14469 * 10 9 8 36 36 H 1.09002 * 109.50454 * 179.11946 * 11 10 9 37 37 H 1.08996 * 109.50469 * 299.23448 * 11 10 9 38 38 H 1.08997 * 109.52838 * 62.24381 * 12 11 10 39 39 H 1.08992 * 109.52274 * 182.44312 * 12 11 10 40 40 H 0.96994 * 120.00002 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.45969 * 305.85021 * 23 9 8 42 42 H 1.08998 * 109.46123 * 65.82519 * 23 9 8 43 43 H 1.07999 * 119.79936 * 179.97438 * 24 7 6 44 44 H 1.07995 * 119.95722 * 180.02562 * 25 24 7 45 45 H 0.96696 * 114.00096 * 90.00052 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5358 1.2776 0.0006 6 6 4.3011 0.1081 -0.0042 7 6 5.6764 0.1872 0.0026 8 6 6.5002 -1.0747 0.0033 9 7 6.7617 -1.4881 1.3884 10 6 5.5187 -1.8821 2.0636 11 6 5.8450 -2.4423 3.4499 12 6 6.5755 -1.3737 4.2679 13 6 7.8411 -0.9460 3.5196 14 1 8.5098 -1.8006 3.4174 15 6 8.5357 0.1472 4.2898 16 1 8.6910 1.1140 3.8341 17 6 8.9731 -0.0867 5.5763 18 7 8.7844 -1.2642 6.1311 19 14 9.8348 1.2681 6.5308 20 1 8.8288 2.0610 7.2823 21 1 10.8014 0.6649 7.4831 22 1 10.5591 2.1557 5.5859 23 6 7.4569 -0.4291 2.1313 24 6 6.3058 1.4216 0.0084 25 6 5.5624 2.5849 0.0069 26 6 4.1766 2.5246 0.0006 27 8 3.4449 3.6667 -0.0004 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.8149 -0.8563 -0.0087 32 1 5.9559 -1.8642 -0.5149 33 1 7.4463 -0.8912 -0.5059 34 1 4.8701 -1.0122 2.1670 35 1 5.0111 -2.6453 1.4737 36 1 4.9210 -2.7201 3.9569 37 1 6.4823 -3.3205 3.3466 38 1 5.9239 -0.5107 4.4044 39 1 6.8483 -1.7829 5.2406 40 1 9.0917 -1.4287 7.0362 41 1 8.3571 -0.1371 1.5905 42 1 6.7991 0.4340 2.2343 43 1 7.3845 1.4740 0.0141 44 1 6.0604 3.5431 0.0110 45 1 3.2367 3.9997 -0.8840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231419440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:55 Heat of formation + Delta-G solvation = -102.746137 kcal Electronic energy + Delta-G solvation = -27554.104780 eV Core-core repulsion = 23729.585080 eV Total energy + Delta-G solvation = -3824.519700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.87038 -39.63575 -38.37394 -36.70979 -36.29600 -33.85252 -32.14445 -31.67888 -29.95327 -29.60057 -27.87320 -25.73962 -25.02838 -24.18433 -22.65008 -21.66433 -21.33617 -20.46915 -18.72305 -18.38345 -17.75889 -16.91700 -16.49072 -16.36529 -15.73521 -15.57606 -15.07383 -14.83317 -14.34310 -14.17558 -14.15979 -13.60808 -13.46940 -13.42044 -12.75411 -12.65638 -12.51417 -12.30990 -12.21725 -11.99788 -11.68631 -11.60153 -11.21234 -11.05259 -10.95328 -10.93617 -10.66272 -10.62922 -10.31796 -10.09698 -9.83519 -9.48173 -9.15817 -9.08361 -8.71911 -8.61297 -8.29112 -7.74313 -5.96318 -4.02395 0.54481 1.12582 2.44110 2.54266 3.31850 3.38696 3.41111 3.50523 4.00908 4.40706 4.50757 4.58768 4.73720 4.84417 4.90701 4.98509 5.15214 5.17699 5.30555 5.33914 5.40005 5.58195 5.69871 5.77536 5.82439 5.95845 5.99904 6.06414 6.08758 6.22901 6.25523 6.41481 6.45454 6.50493 6.60125 6.72474 6.76983 6.96127 7.22342 7.39442 7.51153 7.61922 7.63605 7.74025 7.79293 8.08902 8.18490 8.48862 9.01427 9.61927 11.09630 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.003711 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.028444 B = 7542.843442 C = 8072.300852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.496 6.496 5 C -0.163 4.163 6 C -0.037 4.037 7 C -0.135 4.135 8 C 0.091 3.909 9 N -0.525 5.525 10 C 0.058 3.942 11 C -0.118 4.118 12 C -0.111 4.111 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.064 3.936 24 C -0.047 4.047 25 C -0.158 4.158 26 C 0.169 3.831 27 O -0.479 6.479 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.028 0.972 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.090 0.910 40 H 0.259 0.741 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 1.707 -16.122 19.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.355 3.645 4 O -0.384 6.384 5 C -0.165 4.165 6 C -0.057 4.057 7 C -0.137 4.137 8 C -0.037 4.037 9 N -0.247 5.247 10 C -0.070 4.070 11 C -0.155 4.155 12 C -0.149 4.149 13 C 0.036 3.964 14 H 0.052 0.948 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.063 4.063 24 C -0.066 4.066 25 C -0.176 4.176 26 C 0.123 3.877 27 O -0.290 6.290 28 H 0.080 0.920 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.044 0.956 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.458 1.411 -15.344 19.202 hybrid contribution -0.416 1.669 0.261 1.740 sum -11.874 3.080 -15.083 19.441 Atomic orbital electron populations 1.23257 0.76083 1.03716 1.02512 1.86565 1.23462 1.32759 1.84545 1.21002 0.88868 0.81503 0.73117 1.90847 1.66584 1.35718 1.45285 1.19471 0.89417 0.94582 1.13032 1.21287 0.93187 0.97407 0.93774 1.20861 0.94211 0.97466 1.01177 1.21332 0.98285 0.91380 0.92715 1.62451 1.22110 1.39507 1.00628 1.22108 0.90523 0.98266 0.96083 1.21675 0.99467 1.00278 0.94123 1.21653 0.96496 0.95434 1.01329 1.18663 0.93312 0.96385 0.88019 0.94819 1.21130 1.37077 0.98238 0.98824 0.92911 1.24923 0.95891 0.95354 0.97603 1.69887 1.46861 1.21360 1.14576 0.86652 0.79518 0.82217 0.79941 1.20798 1.21251 1.19965 1.22386 0.95933 0.91101 0.96885 1.21332 1.00742 0.91209 0.93285 1.21403 0.92298 0.99864 1.04072 1.18438 0.89416 0.84421 0.95433 1.84778 1.72849 1.38148 1.33209 0.91994 0.87972 0.91821 0.84356 0.90256 0.89816 0.95390 0.92372 0.93563 0.92074 0.95271 0.89120 0.93078 0.92365 0.95632 0.84623 0.84379 0.75005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.37 9.82 -40.63 -0.40 -4.77 16 3 C 0.51 7.23 7.89 34.46 0.27 7.51 16 4 O -0.50 -7.86 14.95 -26.59 -0.40 -8.26 16 5 C -0.16 -2.26 5.89 -104.86 -0.62 -2.88 16 6 C -0.04 -0.49 7.66 -39.18 -0.30 -0.79 16 7 C -0.13 -1.77 4.04 -104.68 -0.42 -2.19 16 8 C 0.09 1.20 5.55 -4.98 -0.03 1.17 16 9 N -0.53 -9.03 4.86 -236.12 -1.15 -10.17 16 10 C 0.06 0.99 4.81 -3.84 -0.02 0.97 16 11 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 12 C -0.11 -2.63 5.03 -26.61 -0.13 -2.77 16 13 C 0.05 1.35 2.26 -91.69 -0.21 1.14 16 14 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.51 -13.95 8.57 -34.44 -0.30 -14.25 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 17 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -25.28 11.35 55.43 0.63 -24.65 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.06 1.29 3.75 -3.83 -0.01 1.27 16 24 C -0.05 -0.60 7.99 -39.53 -0.32 -0.91 16 25 C -0.16 -1.96 9.98 -39.47 -0.39 -2.35 16 26 C 0.17 2.28 6.72 -38.67 -0.26 2.02 16 27 O -0.48 -6.22 11.58 -40.52 -0.47 -6.69 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.14 1.64 7.58 -52.49 -0.40 1.24 16 32 H 0.08 0.90 8.00 -51.93 -0.42 0.49 16 33 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.03 0.50 6.55 -51.93 -0.34 0.16 16 35 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 42 H 0.03 0.53 6.46 -51.93 -0.34 0.20 16 43 H 0.14 1.58 8.01 -52.49 -0.42 1.16 16 44 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 45 H 0.39 3.25 9.06 45.56 0.41 3.66 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -31.96 362.68 -9.26 -41.23 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.00 Total: 3.03 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -1.92 Total: -11.44 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: -0.52 Total: -34.82 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.27 Total: -19.72 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.96 -9.26 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231419440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.520 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds