Wall clock time and date at job start Tue Mar 31 2020 12:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34750 * 117.00052 * 2 1 4 4 O 1.21501 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.47396 * 119.99583 * 179.97438 * 3 2 1 6 6 C 1.39773 * 120.20223 * 0.25024 * 5 3 2 7 7 C 1.37766 * 119.90387 * 180.29683 * 6 5 3 8 8 C 1.50695 * 119.84333 * 179.74591 * 7 6 5 9 9 N 1.46900 * 109.47466 * 269.97750 * 8 7 6 10 10 C 1.46846 * 110.99821 * 66.04884 * 9 8 7 11 11 C 1.53035 * 109.52273 * 174.16211 * 10 9 8 12 12 C 1.53119 * 109.28026 * 59.18452 * 11 10 9 13 13 C 1.53124 * 109.15595 * 302.34179 * 12 11 10 14 14 H 1.09002 * 109.50319 * 297.71845 * 13 12 11 15 15 C 1.50695 * 109.50402 * 177.63498 * 13 12 11 16 16 H 1.07998 * 120.00340 * 240.00055 * 15 13 12 17 17 C 1.37883 * 119.99944 * 59.99923 * 15 13 12 18 18 N 1.31518 * 119.99999 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00052 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47054 * 90.00455 * 19 17 15 21 21 H 1.48498 * 109.47066 * 210.00203 * 19 17 15 22 22 H 1.48504 * 109.47350 * 330.00248 * 19 17 15 23 23 C 1.46851 * 110.99894 * 301.84067 * 9 8 7 24 24 C 1.38559 * 120.30685 * 359.72934 * 7 6 5 25 25 C 1.38054 * 120.40692 * 359.97068 * 24 7 6 26 26 C 1.38709 * 120.08517 * 0.04995 * 25 24 7 27 27 O 1.35645 * 120.15060 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.47025 * 59.99865 * 1 2 3 29 29 H 1.08997 * 109.47512 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47101 * 300.00603 * 1 2 3 31 31 H 1.08002 * 120.04737 * 0.02562 * 6 5 3 32 32 H 1.08993 * 109.47505 * 29.98313 * 8 7 6 33 33 H 1.09002 * 109.47126 * 149.98147 * 8 7 6 34 34 H 1.09000 * 109.46165 * 294.17887 * 10 9 8 35 35 H 1.09003 * 109.46148 * 54.14469 * 10 9 8 36 36 H 1.09002 * 109.50454 * 179.11946 * 11 10 9 37 37 H 1.08996 * 109.50469 * 299.23448 * 11 10 9 38 38 H 1.08997 * 109.52838 * 62.24381 * 12 11 10 39 39 H 1.08992 * 109.52274 * 182.44312 * 12 11 10 40 40 H 0.96994 * 120.00002 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.45969 * 305.85021 * 23 9 8 42 42 H 1.08998 * 109.46123 * 65.82519 * 23 9 8 43 43 H 1.07999 * 119.79936 * 179.97438 * 24 7 6 44 44 H 1.07995 * 119.95722 * 180.02562 * 25 24 7 45 45 H 0.96696 * 114.00096 * 90.00052 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5358 1.2776 0.0006 6 6 4.3011 0.1081 -0.0042 7 6 5.6764 0.1872 0.0026 8 6 6.5002 -1.0747 0.0033 9 7 6.7617 -1.4881 1.3884 10 6 5.5187 -1.8821 2.0636 11 6 5.8450 -2.4423 3.4499 12 6 6.5755 -1.3737 4.2679 13 6 7.8411 -0.9460 3.5196 14 1 8.5098 -1.8006 3.4174 15 6 8.5357 0.1472 4.2898 16 1 8.6910 1.1140 3.8341 17 6 8.9731 -0.0867 5.5763 18 7 8.7844 -1.2642 6.1311 19 14 9.8348 1.2681 6.5308 20 1 8.8288 2.0610 7.2823 21 1 10.8014 0.6649 7.4831 22 1 10.5591 2.1557 5.5859 23 6 7.4569 -0.4291 2.1313 24 6 6.3058 1.4216 0.0084 25 6 5.5624 2.5849 0.0069 26 6 4.1766 2.5246 0.0006 27 8 3.4449 3.6667 -0.0004 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.8149 -0.8563 -0.0087 32 1 5.9559 -1.8642 -0.5149 33 1 7.4463 -0.8912 -0.5059 34 1 4.8701 -1.0122 2.1670 35 1 5.0111 -2.6453 1.4737 36 1 4.9210 -2.7201 3.9569 37 1 6.4823 -3.3205 3.3466 38 1 5.9239 -0.5107 4.4044 39 1 6.8483 -1.7829 5.2406 40 1 9.0917 -1.4287 7.0362 41 1 8.3571 -0.1371 1.5905 42 1 6.7991 0.4340 2.2343 43 1 7.3845 1.4740 0.0141 44 1 6.0604 3.5431 0.0110 45 1 3.2367 3.9997 -0.8840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231419440.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:54 Heat of formation + Delta-G solvation = -122.987006 kcal Electronic energy + Delta-G solvation = -27554.982490 eV Core-core repulsion = 23729.585080 eV Total energy + Delta-G solvation = -3825.397410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.87531 -40.72153 -39.61494 -37.88037 -37.30836 -35.53881 -33.75184 -32.73640 -31.61342 -30.89414 -28.64342 -27.01292 -26.88489 -25.22551 -23.91304 -23.02500 -22.79337 -21.59289 -20.24011 -19.48259 -18.79260 -18.40230 -17.85572 -17.43854 -16.84378 -16.65147 -16.54907 -16.17209 -15.73880 -15.63227 -15.19110 -14.98358 -14.51021 -14.37339 -14.33459 -14.20375 -14.02688 -13.45538 -13.35718 -13.08640 -12.93185 -12.84965 -12.72979 -12.72027 -12.51282 -12.18731 -12.04140 -11.83449 -11.75382 -11.67885 -11.36830 -11.30826 -10.85991 -10.62986 -10.35806 -10.14290 -9.66030 -9.11391 -8.06026 -6.19345 -0.45577 0.16026 1.40967 1.41698 1.42253 1.51518 1.64595 2.43506 2.53219 3.08720 3.21292 3.25385 3.56217 3.80487 3.84402 4.17122 4.24407 4.25772 4.27790 4.30978 4.33191 4.36857 4.55242 4.62666 4.68714 4.71700 4.80718 4.86179 4.95835 5.00002 5.02071 5.04307 5.12838 5.16173 5.23283 5.26532 5.39292 5.48051 5.56757 5.65948 5.66810 6.00297 6.15125 6.24142 6.39029 6.49165 6.62866 6.70183 6.94133 7.48366 8.98461 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.003711 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.028444 B = 7542.843442 C = 8072.300852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.509 3.491 4 O -0.522 6.522 5 C -0.181 4.181 6 C -0.033 4.033 7 C -0.142 4.142 8 C 0.094 3.906 9 N -0.533 5.533 10 C 0.064 3.936 11 C -0.112 4.112 12 C -0.104 4.104 13 C 0.051 3.949 14 H -0.001 1.001 15 C -0.533 4.533 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.916 5.916 19 Si 0.949 3.051 20 H -0.280 1.280 21 H -0.284 1.284 22 H -0.266 1.266 23 C 0.083 3.917 24 C -0.051 4.051 25 C -0.161 4.161 26 C 0.163 3.837 27 O -0.494 6.494 28 H 0.067 0.933 29 H 0.135 0.865 30 H 0.057 0.943 31 H 0.152 0.848 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.013 0.987 39 H 0.055 0.945 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.018 0.982 43 H 0.145 0.855 44 H 0.154 0.846 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.179 1.674 -17.650 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.276 6.276 3 C 0.356 3.644 4 O -0.412 6.412 5 C -0.183 4.183 6 C -0.052 4.052 7 C -0.144 4.144 8 C -0.034 4.034 9 N -0.255 5.255 10 C -0.064 4.064 11 C -0.150 4.150 12 C -0.143 4.143 13 C 0.032 3.968 14 H 0.017 0.983 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.184 4.184 18 N -0.555 5.555 19 Si 0.775 3.225 20 H -0.206 1.206 21 H -0.209 1.209 22 H -0.190 1.190 23 C -0.045 4.045 24 C -0.070 4.070 25 C -0.179 4.179 26 C 0.117 3.883 27 O -0.307 6.307 28 H 0.086 0.914 29 H 0.153 0.847 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.041 0.959 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.036 0.964 43 H 0.163 0.837 44 H 0.172 0.828 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -12.035 1.372 -16.906 20.798 hybrid contribution -0.290 1.668 0.714 1.837 sum -12.325 3.040 -16.192 20.575 Atomic orbital electron populations 1.23577 0.74245 1.05905 1.02539 1.86550 1.25289 1.31688 1.84023 1.21133 0.89088 0.81703 0.72523 1.90825 1.67127 1.36565 1.46723 1.19632 0.89534 0.95159 1.13976 1.21400 0.93116 0.97652 0.93010 1.20859 0.94252 0.97500 1.01797 1.21432 0.99510 0.92258 0.90160 1.62355 1.22389 1.38593 1.02201 1.22073 0.90455 0.98901 0.94930 1.21594 0.99493 0.98475 0.95461 1.21457 0.96395 0.95993 1.00422 1.18601 0.92816 0.94540 0.90806 0.98316 1.21540 1.37281 0.98876 0.99422 0.93003 1.25684 0.96697 0.97396 0.98652 1.70032 1.47692 1.23035 1.14754 0.85699 0.78481 0.79683 0.78656 1.20645 1.20926 1.19007 1.21982 0.96366 0.91369 0.94773 1.21538 1.01348 0.91321 0.92772 1.21584 0.91979 1.00645 1.03707 1.18634 0.89903 0.84547 0.95238 1.84720 1.72923 1.38092 1.34986 0.91425 0.84718 0.92411 0.83083 0.87611 0.88518 0.95894 0.88790 0.91781 0.92738 0.96794 0.92661 0.93197 0.91949 0.96384 0.83706 0.82786 0.72946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.67 16 2 O -0.36 -8.18 9.82 -56.61 -0.56 -8.73 16 3 C 0.51 13.93 7.89 70.23 0.55 14.48 16 4 O -0.52 -16.30 14.95 26.83 0.40 -15.89 16 5 C -0.18 -4.78 5.89 -20.02 -0.12 -4.90 16 6 C -0.03 -0.78 7.66 22.53 0.17 -0.61 16 7 C -0.14 -3.37 4.04 -19.90 -0.08 -3.45 16 8 C 0.09 2.17 5.55 85.56 0.47 2.64 16 9 N -0.53 -17.20 4.86 -900.94 -4.38 -21.58 16 10 C 0.06 2.02 4.81 86.33 0.42 2.43 16 11 C -0.11 -4.26 6.09 30.65 0.19 -4.08 16 12 C -0.10 -5.06 5.03 30.68 0.15 -4.90 16 13 C 0.05 2.57 2.26 -11.49 -0.03 2.54 16 14 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 15 C -0.53 -29.39 8.57 25.60 0.22 -29.17 16 16 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 17 C 0.01 0.80 5.30 84.66 0.45 1.25 16 18 N -0.92 -53.52 11.35 21.45 0.24 -53.28 16 19 Si 0.95 44.02 29.54 68.60 2.03 46.05 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.08 3.27 3.75 86.33 0.32 3.60 16 24 C -0.05 -1.20 7.99 22.30 0.18 -1.02 16 25 C -0.16 -3.74 9.98 22.34 0.22 -3.52 16 26 C 0.16 4.21 6.72 22.86 0.15 4.36 16 27 O -0.49 -12.43 11.58 -68.67 -0.79 -13.23 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.15 3.11 7.58 -2.91 -0.02 3.09 16 32 H 0.11 1.94 8.00 -2.39 -0.02 1.92 16 33 H 0.10 2.02 8.08 -2.39 -0.02 2.00 16 34 H 0.02 0.76 6.55 -2.39 -0.02 0.74 16 35 H 0.09 2.34 8.06 -2.39 -0.02 2.32 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.05 3.05 6.15 -2.39 -0.01 3.03 16 40 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 42 H 0.02 0.74 6.46 -2.39 -0.02 0.72 16 43 H 0.15 3.08 8.01 -2.91 -0.02 3.06 16 44 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 45 H 0.41 6.48 9.06 -74.06 -0.67 5.81 16 Total: -1.00 -70.23 362.68 1.75 -68.48 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.33 Total: 16.86 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: 4.48 Total: -18.68 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -4.13 Total: -74.86 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.95 Total: -37.86 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -70.23 1.75 -68.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231419440.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.505 kcal (2) G-P(sol) polarization free energy of solvation -70.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds