Wall clock time and date at job start Tue Mar 31 2020 12:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34750 * 117.00037 * 2 1 4 4 O 1.21502 * 120.00053 * 359.97438 * 3 2 1 5 5 C 1.47398 * 119.99563 * 180.02562 * 3 2 1 6 6 C 1.39773 * 120.20249 * 0.22304 * 5 3 2 7 7 C 1.37766 * 119.90409 * 180.30460 * 6 5 3 8 8 C 1.50694 * 119.84711 * 179.72363 * 7 6 5 9 9 N 1.46904 * 109.47256 * 270.02329 * 8 7 6 10 10 C 1.46845 * 110.99889 * 45.78613 * 9 8 7 11 11 C 1.53043 * 109.52210 * 185.83848 * 10 9 8 12 12 C 1.53118 * 109.27936 * 300.82622 * 11 10 9 13 13 C 1.53118 * 109.16162 * 57.65300 * 12 11 10 14 14 H 1.08999 * 109.53687 * 62.30447 * 13 12 11 15 15 C 1.50695 * 109.50143 * 182.40427 * 13 12 11 16 16 H 1.07999 * 120.00094 * 119.80156 * 15 13 12 17 17 C 1.37878 * 120.00376 * 299.80355 * 15 13 12 18 18 N 1.31511 * 120.00409 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99593 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.47206 * 90.00136 * 19 17 15 21 21 H 1.48502 * 109.47297 * 210.00340 * 19 17 15 22 22 H 1.48500 * 109.47184 * 330.00175 * 19 17 15 23 23 C 1.46841 * 111.00209 * 169.99972 * 9 8 7 24 24 C 1.38559 * 120.30673 * 359.74390 * 7 6 5 25 25 C 1.38055 * 120.40669 * 359.97438 * 24 7 6 26 26 C 1.38709 * 120.08541 * 0.02562 * 25 24 7 27 27 O 1.35645 * 120.15060 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46662 * 300.00482 * 1 2 3 29 29 H 1.08997 * 109.46847 * 59.99919 * 1 2 3 30 30 H 1.08997 * 109.47494 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.04743 * 0.04852 * 6 5 3 32 32 H 1.09004 * 109.47339 * 30.01978 * 8 7 6 33 33 H 1.08999 * 109.47276 * 150.02137 * 8 7 6 34 34 H 1.08997 * 109.46571 * 305.85488 * 10 9 8 35 35 H 1.09002 * 109.46203 * 65.82639 * 10 9 8 36 36 H 1.08992 * 109.50106 * 180.87630 * 11 10 9 37 37 H 1.09007 * 109.49840 * 60.76740 * 11 10 9 38 38 H 1.08995 * 109.51867 * 297.74756 * 12 11 10 39 39 H 1.09000 * 109.57037 * 177.58804 * 12 11 10 40 40 H 0.97002 * 120.00224 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.46185 * 294.17834 * 23 9 8 42 42 H 1.09005 * 109.46385 * 54.13966 * 23 9 8 43 43 H 1.07999 * 119.79950 * 179.97438 * 24 7 6 44 44 H 1.07995 * 119.95733 * 179.97438 * 25 24 7 45 45 H 0.96696 * 114.00096 * 90.00052 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.3011 0.1081 -0.0058 7 6 5.6764 0.1872 0.0000 8 6 6.5003 -1.0746 0.0007 9 7 6.7618 -1.4880 1.3859 10 6 5.5386 -1.4193 2.1954 11 6 5.8763 -1.7148 3.6586 12 6 6.5014 -3.1088 3.7615 13 6 7.7460 -3.1685 2.8717 14 1 8.4828 -2.4480 3.2267 15 6 8.3338 -4.5552 2.9213 16 1 8.4196 -5.1381 2.0162 17 6 8.7622 -5.0799 4.1222 18 7 9.2757 -6.2899 4.1655 19 14 8.6145 -4.0715 5.6877 20 1 7.2997 -4.3365 6.3251 21 1 9.7036 -4.4487 6.6241 22 1 8.7229 -2.6275 5.3584 23 6 7.3540 -2.8310 1.4314 24 6 6.3058 1.4216 0.0057 25 6 5.5624 2.5849 0.0051 26 6 4.1766 2.5246 -0.0007 27 8 3.4450 3.6667 -0.0008 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.8149 -0.8563 -0.0103 32 1 5.9560 -1.8642 -0.5175 33 1 7.4464 -0.8912 -0.5085 34 1 5.1065 -0.4217 2.1167 35 1 4.8211 -2.1554 1.8325 36 1 4.9658 -1.6791 4.2565 37 1 6.5832 -0.9709 4.0262 38 1 5.7806 -3.8565 3.4305 39 1 6.7831 -3.3072 4.7957 40 1 9.5774 -6.6588 5.0103 41 1 6.6280 -3.5604 1.0721 42 1 8.2405 -2.8587 0.7977 43 1 7.3845 1.4741 0.0107 44 1 6.0605 3.5431 0.0100 45 1 3.2364 4.0002 -0.8842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231419441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:00 Heat of formation + Delta-G solvation = -93.605450 kcal Electronic energy + Delta-G solvation = -27129.817704 eV Core-core repulsion = 23305.694374 eV Total energy + Delta-G solvation = -3824.123330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98634 -39.69855 -38.55328 -37.03432 -36.41814 -33.99899 -32.25658 -31.85313 -30.53118 -29.98672 -27.96884 -25.97142 -24.96949 -24.33467 -22.76901 -22.06335 -21.42847 -20.33167 -18.90575 -18.65798 -17.85150 -17.00240 -16.71734 -16.58906 -15.91311 -15.80023 -15.61386 -14.99876 -14.39437 -14.30955 -13.90055 -13.75362 -13.65463 -13.51840 -13.40353 -12.91384 -12.58186 -12.52654 -12.37675 -12.20918 -12.04240 -11.65210 -11.55358 -11.16104 -11.06496 -11.03740 -11.01711 -10.49166 -10.44165 -10.08031 -9.95672 -9.69491 -9.36455 -9.09983 -8.93033 -8.81638 -8.51126 -7.84859 -6.06882 -4.06110 0.40360 0.94777 2.31990 2.43872 3.29457 3.33143 3.40736 3.44023 3.86702 4.33851 4.43050 4.47075 4.58421 4.60458 4.84239 4.91883 5.00899 5.04774 5.21530 5.24949 5.31981 5.44257 5.46356 5.54940 5.64947 5.74167 5.82254 5.86618 5.93919 5.99427 6.11847 6.14406 6.27517 6.31899 6.33080 6.43555 6.48464 6.60675 6.79968 6.84246 7.19478 7.36333 7.38079 7.52790 7.53168 7.64287 7.85360 8.51776 8.96131 9.56091 11.06304 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019173 B = 0.003146 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.029734 B = 8898.680047 C = 9430.832143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.495 6.495 5 C -0.161 4.161 6 C -0.040 4.040 7 C -0.096 4.096 8 C 0.091 3.909 9 N -0.535 5.535 10 C 0.058 3.942 11 C -0.119 4.119 12 C -0.122 4.122 13 C 0.021 3.979 14 H 0.036 0.964 15 C -0.514 4.514 16 H 0.072 0.928 17 C 0.071 3.929 18 N -0.902 5.902 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.263 1.263 23 C 0.077 3.923 24 C -0.044 4.044 25 C -0.159 4.159 26 C 0.168 3.832 27 O -0.480 6.480 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.140 0.860 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.263 0.737 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.980 16.686 -11.564 24.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.354 3.646 4 O -0.384 6.384 5 C -0.163 4.163 6 C -0.059 4.059 7 C -0.096 4.096 8 C -0.036 4.036 9 N -0.260 5.260 10 C -0.070 4.070 11 C -0.157 4.157 12 C -0.160 4.160 13 C 0.002 3.998 14 H 0.054 0.946 15 C -0.553 4.553 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.541 5.541 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.188 1.188 23 C -0.050 4.050 24 C -0.063 4.063 25 C -0.178 4.178 26 C 0.122 3.878 27 O -0.291 6.291 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.157 0.843 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -12.769 17.097 -10.654 23.851 hybrid contribution -0.974 -0.107 0.207 1.002 sum -13.743 16.989 -10.446 24.221 Atomic orbital electron populations 1.23274 0.75915 1.03849 1.02525 1.86573 1.23593 1.32665 1.84442 1.20987 0.88853 0.81562 0.73187 1.90852 1.66571 1.35721 1.45231 1.19457 0.89506 0.94451 1.12906 1.21364 0.93280 0.97666 0.93614 1.19902 0.93178 0.95865 1.00652 1.21098 0.98573 0.92309 0.91625 1.62194 1.26963 1.28897 1.07955 1.22130 0.90809 0.99800 0.94285 1.21651 0.99973 0.99250 0.94854 1.22027 0.99490 0.94321 1.00158 1.19154 0.93008 0.97452 0.90232 0.94616 1.20994 1.40097 0.98406 0.95770 0.90947 1.24978 0.94480 0.94675 0.98942 1.69897 1.42046 1.15645 1.26482 0.86834 0.76632 0.81482 0.83257 1.20735 1.22640 1.18791 1.22121 0.97658 0.85098 1.00091 1.21255 1.00843 0.90849 0.93365 1.21403 0.92241 0.99822 1.04291 1.18448 0.89442 0.84431 0.95459 1.84761 1.72854 1.38076 1.33396 0.91804 0.91917 0.87889 0.84256 0.93855 0.89576 0.91516 0.95340 0.92872 0.91866 0.92567 0.93570 0.92689 0.95356 0.91302 0.84363 0.84345 0.74818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.37 16 2 O -0.36 -4.02 9.82 -40.63 -0.40 -4.41 16 3 C 0.51 6.44 7.89 34.46 0.27 6.71 16 4 O -0.50 -7.09 14.95 -26.59 -0.40 -7.48 16 5 C -0.16 -1.91 5.89 -104.86 -0.62 -2.53 16 6 C -0.04 -0.46 7.33 -39.18 -0.29 -0.74 16 7 C -0.10 -1.07 4.13 -104.68 -0.43 -1.51 16 8 C 0.09 1.15 5.42 -4.98 -0.03 1.12 16 9 N -0.54 -8.64 4.80 -236.11 -1.13 -9.77 16 10 C 0.06 0.91 4.57 -3.83 -0.02 0.90 16 11 C -0.12 -2.12 6.09 -26.65 -0.16 -2.29 16 12 C -0.12 -2.62 4.74 -26.61 -0.13 -2.75 16 13 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 14 H 0.04 0.87 7.19 -51.93 -0.37 0.49 16 15 C -0.51 -14.15 9.14 -34.44 -0.31 -14.46 16 16 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 17 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 18 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 19 Si 0.89 22.03 24.36 -169.99 -4.14 17.89 16 20 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 21 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.26 -6.30 6.53 56.52 0.37 -5.93 16 23 C 0.08 1.48 4.65 -3.84 -0.02 1.46 16 24 C -0.04 -0.44 9.68 -39.53 -0.38 -0.83 16 25 C -0.16 -1.51 9.98 -39.47 -0.39 -1.91 16 26 C 0.17 1.85 6.72 -38.67 -0.26 1.59 16 27 O -0.48 -5.14 11.58 -40.52 -0.47 -5.61 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.53 7.61 -52.49 -0.40 1.13 16 32 H 0.04 0.53 8.02 -51.93 -0.42 0.11 16 33 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.07 0.99 5.64 -51.93 -0.29 0.69 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.06 3.37 -51.93 -0.17 0.88 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 43 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.39 2.50 9.06 45.56 0.41 2.92 16 LS Contribution 358.71 15.07 5.41 5.41 Total: -1.00 -33.13 358.71 -8.24 -41.37 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.91 Total: 0.92 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -1.97 Total: -11.63 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.36 Total: -36.46 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -1.27 Total: -17.51 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.14 Total: 17.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.13 -8.24 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231419441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.234 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds