Wall clock time and date at job start Tue Mar 31 2020 12:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34750 * 117.00037 * 2 1 4 4 O 1.21502 * 120.00053 * 359.97438 * 3 2 1 5 5 C 1.47398 * 119.99563 * 180.02562 * 3 2 1 6 6 C 1.39773 * 120.20249 * 0.22304 * 5 3 2 7 7 C 1.37766 * 119.90409 * 180.30460 * 6 5 3 8 8 C 1.50694 * 119.84711 * 179.72363 * 7 6 5 9 9 N 1.46904 * 109.47256 * 270.02329 * 8 7 6 10 10 C 1.46845 * 110.99889 * 45.78613 * 9 8 7 11 11 C 1.53043 * 109.52210 * 185.83848 * 10 9 8 12 12 C 1.53118 * 109.27936 * 300.82622 * 11 10 9 13 13 C 1.53118 * 109.16162 * 57.65300 * 12 11 10 14 14 H 1.08999 * 109.53687 * 62.30447 * 13 12 11 15 15 C 1.50695 * 109.50143 * 182.40427 * 13 12 11 16 16 H 1.07999 * 120.00094 * 119.80156 * 15 13 12 17 17 C 1.37878 * 120.00376 * 299.80355 * 15 13 12 18 18 N 1.31511 * 120.00409 * 180.02562 * 17 15 13 19 19 Si 1.86798 * 119.99593 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.47206 * 90.00136 * 19 17 15 21 21 H 1.48502 * 109.47297 * 210.00340 * 19 17 15 22 22 H 1.48500 * 109.47184 * 330.00175 * 19 17 15 23 23 C 1.46841 * 111.00209 * 169.99972 * 9 8 7 24 24 C 1.38559 * 120.30673 * 359.74390 * 7 6 5 25 25 C 1.38055 * 120.40669 * 359.97438 * 24 7 6 26 26 C 1.38709 * 120.08541 * 0.02562 * 25 24 7 27 27 O 1.35645 * 120.15060 * 179.97438 * 26 25 24 28 28 H 1.09004 * 109.46662 * 300.00482 * 1 2 3 29 29 H 1.08997 * 109.46847 * 59.99919 * 1 2 3 30 30 H 1.08997 * 109.47494 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.04743 * 0.04852 * 6 5 3 32 32 H 1.09004 * 109.47339 * 30.01978 * 8 7 6 33 33 H 1.08999 * 109.47276 * 150.02137 * 8 7 6 34 34 H 1.08997 * 109.46571 * 305.85488 * 10 9 8 35 35 H 1.09002 * 109.46203 * 65.82639 * 10 9 8 36 36 H 1.08992 * 109.50106 * 180.87630 * 11 10 9 37 37 H 1.09007 * 109.49840 * 60.76740 * 11 10 9 38 38 H 1.08995 * 109.51867 * 297.74756 * 12 11 10 39 39 H 1.09000 * 109.57037 * 177.58804 * 12 11 10 40 40 H 0.97002 * 120.00224 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.46185 * 294.17834 * 23 9 8 42 42 H 1.09005 * 109.46385 * 54.13966 * 23 9 8 43 43 H 1.07999 * 119.79950 * 179.97438 * 24 7 6 44 44 H 1.07995 * 119.95733 * 179.97438 * 25 24 7 45 45 H 0.96696 * 114.00096 * 90.00052 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5358 1.2777 -0.0006 6 6 4.3011 0.1081 -0.0058 7 6 5.6764 0.1872 0.0000 8 6 6.5003 -1.0746 0.0007 9 7 6.7618 -1.4880 1.3859 10 6 5.5386 -1.4193 2.1954 11 6 5.8763 -1.7148 3.6586 12 6 6.5014 -3.1088 3.7615 13 6 7.7460 -3.1685 2.8717 14 1 8.4828 -2.4480 3.2267 15 6 8.3338 -4.5552 2.9213 16 1 8.4196 -5.1381 2.0162 17 6 8.7622 -5.0799 4.1222 18 7 9.2757 -6.2899 4.1655 19 14 8.6145 -4.0715 5.6877 20 1 7.2997 -4.3365 6.3251 21 1 9.7036 -4.4487 6.6241 22 1 8.7229 -2.6275 5.3584 23 6 7.3540 -2.8310 1.4314 24 6 6.3058 1.4216 0.0057 25 6 5.5624 2.5849 0.0051 26 6 4.1766 2.5246 -0.0007 27 8 3.4450 3.6667 -0.0008 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.8149 -0.8563 -0.0103 32 1 5.9560 -1.8642 -0.5175 33 1 7.4464 -0.8912 -0.5085 34 1 5.1065 -0.4217 2.1167 35 1 4.8211 -2.1554 1.8325 36 1 4.9658 -1.6791 4.2565 37 1 6.5832 -0.9709 4.0262 38 1 5.7806 -3.8565 3.4305 39 1 6.7831 -3.3072 4.7957 40 1 9.5774 -6.6588 5.0103 41 1 6.6280 -3.5604 1.0721 42 1 8.2405 -2.8587 0.7977 43 1 7.3845 1.4741 0.0107 44 1 6.0605 3.5431 0.0100 45 1 3.2364 4.0002 -0.8842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231419441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:59 Heat of formation + Delta-G solvation = -116.159185 kcal Electronic energy + Delta-G solvation = -27130.795708 eV Core-core repulsion = 23305.694374 eV Total energy + Delta-G solvation = -3825.101333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84843 -40.65545 -39.73044 -38.02086 -37.30496 -35.55854 -34.01594 -32.69648 -32.01741 -31.22949 -28.65677 -27.08831 -26.82949 -25.18452 -23.99711 -23.13453 -22.80692 -21.37123 -20.45818 -19.46695 -18.84885 -18.68578 -17.86107 -17.43909 -17.21500 -16.74574 -16.48491 -16.16810 -15.97146 -15.32478 -15.25776 -15.02521 -14.79233 -14.75036 -14.42017 -14.33272 -13.96516 -13.79293 -13.47938 -13.13324 -13.02575 -12.92043 -12.75373 -12.61226 -12.57431 -12.19183 -11.93644 -11.85958 -11.83338 -11.72543 -11.40924 -11.28520 -10.98076 -10.80351 -10.59639 -10.12827 -9.68057 -9.10798 -8.28361 -6.31176 -0.42359 0.15465 1.31708 1.37848 1.44314 1.48661 1.66367 2.34461 2.50544 3.07970 3.11454 3.21267 3.55108 3.72566 3.85422 4.03563 4.11088 4.22213 4.25924 4.27772 4.28147 4.30304 4.46217 4.49438 4.62443 4.67176 4.72720 4.73768 4.81307 4.84028 4.92374 4.98301 5.03220 5.06865 5.16636 5.17650 5.25769 5.29542 5.47755 5.51894 5.65271 5.68534 5.75577 6.16836 6.26670 6.37332 6.64121 6.74266 6.76717 7.34686 8.88373 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019173 B = 0.003146 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.029734 B = 8898.680047 C = 9430.832143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.507 3.493 4 O -0.520 6.520 5 C -0.178 4.178 6 C -0.039 4.039 7 C -0.104 4.104 8 C 0.093 3.907 9 N -0.538 5.538 10 C 0.061 3.939 11 C -0.115 4.115 12 C -0.122 4.122 13 C 0.020 3.980 14 H 0.027 0.973 15 C -0.516 4.516 16 H 0.036 0.964 17 C 0.014 3.986 18 N -0.951 5.951 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.301 1.301 22 H -0.247 1.247 23 C 0.089 3.911 24 C -0.038 4.038 25 C -0.153 4.153 26 C 0.167 3.833 27 O -0.494 6.494 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.265 0.735 41 H 0.020 0.980 42 H 0.067 0.933 43 H 0.156 0.844 44 H 0.162 0.838 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 19.176 -11.640 26.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.280 6.280 3 C 0.354 3.646 4 O -0.411 6.411 5 C -0.180 4.180 6 C -0.057 4.057 7 C -0.104 4.104 8 C -0.034 4.034 9 N -0.263 5.263 10 C -0.066 4.066 11 C -0.153 4.153 12 C -0.159 4.159 13 C 0.001 3.999 14 H 0.045 0.955 15 C -0.554 4.554 16 H 0.054 0.946 17 C -0.183 4.183 18 N -0.591 5.591 19 Si 0.776 3.224 20 H -0.197 1.197 21 H -0.229 1.229 22 H -0.171 1.171 23 C -0.039 4.039 24 C -0.056 4.056 25 C -0.171 4.171 26 C 0.121 3.879 27 O -0.307 6.307 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.086 0.914 43 H 0.174 0.826 44 H 0.180 0.820 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.609 19.605 -10.763 26.180 hybrid contribution -0.754 -0.893 0.106 1.173 sum -14.363 18.712 -10.657 25.884 Atomic orbital electron populations 1.23553 0.74330 1.05699 1.02656 1.86566 1.25254 1.32088 1.84056 1.21211 0.89293 0.81565 0.72560 1.90829 1.67145 1.36438 1.46670 1.19549 0.89178 0.95096 1.14178 1.21330 0.93355 0.97535 0.93527 1.19775 0.92874 0.95734 1.02059 1.21133 0.99736 0.93041 0.89444 1.62111 1.27419 1.26346 1.10398 1.22116 0.90674 1.00818 0.93018 1.21628 1.00618 0.96391 0.96675 1.21921 0.98604 0.96791 0.98611 1.19071 0.93416 0.94162 0.93264 0.95517 1.21346 1.39497 1.00263 0.94336 0.94578 1.25807 0.94389 0.95642 1.02486 1.70042 1.44002 1.17675 1.27416 0.85838 0.76796 0.80653 0.79095 1.19660 1.22882 1.17108 1.21805 0.97766 0.86913 0.97410 1.21479 1.01799 0.90338 0.92010 1.21610 0.91513 1.00764 1.03205 1.18653 0.90111 0.84243 0.94916 1.84707 1.73000 1.37945 1.35074 0.92064 0.91448 0.85224 0.84328 0.93539 0.88177 0.89750 0.95147 0.90668 0.91908 0.93315 0.94927 0.92644 0.96207 0.91410 0.82596 0.82008 0.72843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.65 16 2 O -0.36 -7.74 9.82 -56.61 -0.56 -8.30 16 3 C 0.51 12.27 7.89 70.23 0.55 12.83 16 4 O -0.52 -14.46 14.95 26.83 0.40 -14.06 16 5 C -0.18 -3.90 5.89 -20.02 -0.12 -4.02 16 6 C -0.04 -0.79 7.33 22.53 0.17 -0.63 16 7 C -0.10 -2.04 4.13 -19.90 -0.08 -2.12 16 8 C 0.09 2.10 5.42 85.55 0.46 2.56 16 9 N -0.54 -16.13 4.80 -900.92 -4.32 -20.45 16 10 C 0.06 1.78 4.57 86.33 0.39 2.17 16 11 C -0.12 -3.78 6.09 30.65 0.19 -3.59 16 12 C -0.12 -5.04 4.74 30.67 0.15 -4.90 16 13 C 0.02 0.91 1.85 -11.49 -0.02 0.89 16 14 H 0.03 1.27 7.19 -2.39 -0.02 1.25 16 15 C -0.52 -29.06 9.14 25.60 0.23 -28.82 16 16 H 0.04 2.23 7.99 -2.91 -0.02 2.20 16 17 C 0.01 0.79 5.45 84.66 0.46 1.25 16 18 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 19 Si 0.95 45.56 24.36 68.60 1.67 47.23 16 20 H -0.27 -12.45 6.89 99.48 0.69 -11.76 16 21 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 22 H -0.25 -11.12 6.53 99.48 0.65 -10.47 16 23 C 0.09 3.33 4.65 86.33 0.40 3.73 16 24 C -0.04 -0.62 9.68 22.30 0.22 -0.40 16 25 C -0.15 -2.39 9.98 22.34 0.22 -2.16 16 26 C 0.17 3.28 6.72 22.86 0.15 3.43 16 27 O -0.49 -9.60 11.58 -68.67 -0.79 -10.40 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.14 2.80 7.61 -2.91 -0.02 2.78 16 32 H 0.05 1.04 8.02 -2.38 -0.02 1.02 16 33 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 34 H 0.08 2.21 5.64 -2.39 -0.01 2.20 16 35 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.03 1.43 3.37 -2.39 -0.01 1.42 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.07 2.53 8.12 -2.38 -0.02 2.51 16 43 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.41 4.50 9.06 -74.06 -0.67 3.83 16 Total: -1.00 -72.36 358.71 1.53 -70.83 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.26 Total: 12.50 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.58 Total: -18.13 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -4.02 Total: -79.68 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.95 Total: -32.75 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -72.36 1.53 -70.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231419441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.324 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds