Wall clock time and date at job start Tue Mar 31 2020 12:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34750 * 116.99806 * 2 1 4 4 O 1.21509 * 120.00210 * 359.97438 * 3 2 1 5 5 C 1.47399 * 119.99634 * 179.97438 * 3 2 1 6 6 C 1.39764 * 120.19816 * 0.02562 * 5 3 2 7 7 C 1.37762 * 119.90084 * 179.97438 * 6 5 3 8 8 C 1.50703 * 119.84523 * 180.02562 * 7 6 5 9 9 N 1.46900 * 109.47219 * 269.98154 * 8 7 6 10 10 C 1.46845 * 111.00025 * 294.20671 * 9 8 7 11 11 C 1.53035 * 109.52406 * 174.15965 * 10 9 8 12 12 C 1.53121 * 109.27751 * 59.18473 * 11 10 9 13 13 C 1.50704 * 109.57115 * 182.40748 * 12 11 10 14 14 H 1.08005 * 119.99608 * 119.71443 * 13 12 11 15 15 C 1.37872 * 120.00029 * 299.70758 * 13 12 11 16 16 N 1.31508 * 120.00150 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99855 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46829 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46791 * 120.00176 * 17 15 13 20 20 H 1.48498 * 109.47191 * 240.00515 * 17 15 13 21 21 C 1.53112 * 109.15784 * 302.34177 * 12 11 10 22 22 C 1.46845 * 111.00098 * 169.99924 * 9 8 7 23 23 C 1.38560 * 120.31004 * 0.02562 * 7 6 5 24 24 C 1.38055 * 120.40307 * 359.97438 * 23 7 6 25 25 C 1.38706 * 120.08902 * 359.97438 * 24 23 7 26 26 O 1.35637 * 120.15393 * 180.02562 * 25 24 23 27 27 H 1.09002 * 109.47166 * 60.00156 * 1 2 3 28 28 H 1.08998 * 109.47574 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47762 * 300.00420 * 1 2 3 30 30 H 1.08001 * 120.05125 * 359.95840 * 6 5 3 31 31 H 1.08997 * 109.47080 * 29.98086 * 8 7 6 32 32 H 1.09001 * 109.47256 * 149.98299 * 8 7 6 33 33 H 1.08997 * 109.46487 * 294.17852 * 10 9 8 34 34 H 1.09007 * 109.46246 * 54.14721 * 10 9 8 35 35 H 1.09000 * 109.50650 * 299.24219 * 11 10 9 36 36 H 1.09004 * 109.53474 * 179.14276 * 11 10 9 37 37 H 1.09001 * 109.52346 * 62.25060 * 12 11 10 38 38 H 0.97001 * 119.99857 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.51008 * 297.71693 * 21 12 11 40 40 H 1.09004 * 109.53561 * 177.61330 * 21 12 11 41 41 H 1.09002 * 109.46410 * 305.85780 * 22 9 8 42 42 H 1.09002 * 109.46087 * 65.83664 * 22 9 8 43 43 H 1.08001 * 119.79995 * 180.27749 * 23 7 6 44 44 H 1.07999 * 119.95349 * 179.97438 * 24 23 7 45 45 H 0.96692 * 114.00089 * 89.99963 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4019 2.2197 -0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.3009 0.1082 0.0006 7 6 5.6763 0.1874 0.0006 8 6 6.5001 -1.0745 0.0000 9 7 6.7683 -1.4849 1.3848 10 6 7.6216 -0.5046 2.0683 11 6 7.7599 -0.8875 3.5435 12 6 8.3737 -2.2865 3.6473 13 6 8.4583 -2.6944 5.0956 14 1 7.9355 -3.5744 5.4402 15 6 9.2034 -1.9444 5.9806 16 7 9.8398 -0.8728 5.5611 17 14 9.3089 -2.4506 7.7757 18 1 8.5094 -3.6835 7.9902 19 1 10.7262 -2.7117 8.1338 20 1 8.7754 -1.3593 8.6299 21 6 7.4913 -3.2800 2.8866 22 6 7.3607 -2.8277 1.4304 23 6 6.3056 1.4218 0.0011 24 6 5.5622 2.5851 0.0011 25 6 4.1764 2.5248 0.0000 26 8 3.4447 3.6668 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3635 0.5139 0.8899 30 1 3.8148 -0.8562 0.0008 31 1 5.9534 -1.8651 -0.5139 32 1 7.4439 -0.8920 -0.5140 33 1 8.6068 -0.4931 1.6022 34 1 7.1717 0.4852 1.9907 35 1 6.7765 -0.8858 4.0137 36 1 8.4056 -0.1685 4.0477 37 1 9.3729 -2.2791 3.2119 38 1 10.3636 -0.3449 6.1839 39 1 6.5037 -3.3159 3.3463 40 1 7.9448 -4.2706 2.9207 41 1 6.7214 -3.5253 0.8893 42 1 8.3473 -2.8053 0.9674 43 1 7.3843 1.4743 -0.0034 44 1 6.0603 3.5434 0.0019 45 1 3.2332 3.9980 -0.8840 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231419832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:31 Heat of formation + Delta-G solvation = -102.862961 kcal Electronic energy + Delta-G solvation = -26857.394909 eV Core-core repulsion = 23032.870143 eV Total energy + Delta-G solvation = -3824.524766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84028 -39.52737 -38.32699 -36.89077 -36.31020 -33.99844 -31.93137 -31.67320 -29.91611 -29.79152 -27.87043 -26.38159 -24.38535 -24.21363 -22.46768 -21.93415 -21.32662 -20.42546 -18.62985 -18.54533 -17.76958 -16.89543 -16.48341 -16.36669 -15.77717 -15.62453 -15.31344 -14.83623 -14.43459 -14.18195 -14.07906 -13.60736 -13.46964 -13.19009 -12.94843 -12.65481 -12.52193 -12.31185 -12.24999 -12.05395 -11.76974 -11.42646 -11.30374 -11.01703 -10.94494 -10.93634 -10.72720 -10.42903 -10.31346 -10.21111 -9.97105 -9.43445 -9.21097 -8.97911 -8.70090 -8.66166 -8.28151 -7.78815 -5.96028 -4.00955 0.51964 1.11682 2.42357 2.54499 3.31673 3.39902 3.43896 3.46509 3.98104 4.46310 4.48475 4.51419 4.71515 4.79444 4.91493 4.99331 5.13000 5.16706 5.29468 5.34512 5.36497 5.54128 5.66970 5.71570 5.79635 5.87585 5.98821 6.04600 6.07746 6.19366 6.21983 6.30253 6.44317 6.56803 6.61249 6.62899 6.85491 7.07874 7.16059 7.43474 7.48709 7.60349 7.63681 7.65956 7.83566 8.06201 8.16981 8.50041 9.02875 9.63554 11.10212 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015415 B = 0.002964 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.997230 B = 9444.398022 C = 9560.187631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.511 3.489 4 O -0.497 6.497 5 C -0.163 4.163 6 C -0.026 4.026 7 C -0.090 4.090 8 C 0.091 3.909 9 N -0.531 5.531 10 C 0.054 3.946 11 C -0.104 4.104 12 C 0.048 3.952 13 C -0.509 4.509 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.106 4.106 22 C 0.061 3.939 23 C -0.055 4.055 24 C -0.159 4.159 25 C 0.169 3.831 26 O -0.480 6.480 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.020 0.980 38 H 0.258 0.742 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.943 4.045 -16.979 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.385 6.385 5 C -0.164 4.164 6 C -0.044 4.044 7 C -0.090 4.090 8 C -0.037 4.037 9 N -0.256 5.256 10 C -0.073 4.073 11 C -0.142 4.142 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.144 4.144 22 C -0.066 4.066 23 C -0.074 4.074 24 C -0.177 4.177 25 C 0.123 3.877 26 O -0.290 6.290 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.110 0.890 37 H 0.038 0.962 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -12.474 4.389 -16.051 20.797 hybrid contribution 0.635 0.023 0.196 0.665 sum -11.839 4.413 -15.855 20.273 Atomic orbital electron populations 1.23256 0.76090 1.03734 1.02481 1.86574 1.23444 1.32701 1.84479 1.20993 0.88862 0.81505 0.73079 1.90848 1.66599 1.35739 1.45355 1.19481 0.89478 0.94541 1.12941 1.21235 0.93014 0.97526 0.92675 1.19820 0.93596 0.95145 1.00488 1.21026 0.97364 0.93720 0.91595 1.62040 1.48252 1.03075 1.12204 1.22370 0.92892 0.94164 0.97907 1.21655 1.00525 1.01469 0.90563 1.18686 0.93343 0.90521 0.94526 1.21249 1.29390 1.10476 0.93630 0.92719 1.24964 0.95461 0.95062 0.98545 1.69879 1.32282 1.16380 1.34597 0.86588 0.77627 0.78566 0.85527 1.19828 1.21174 1.21083 1.21681 1.01036 0.99151 0.92559 1.22131 0.96184 0.88997 0.99302 1.21299 1.00551 0.91382 0.94183 1.21349 0.92310 0.99680 1.04376 1.18433 0.89388 0.84436 0.95473 1.84770 1.72813 1.38171 1.33265 0.92021 0.87970 0.91819 0.83996 0.90133 0.94165 0.95956 0.92331 0.93861 0.88983 0.96191 0.93189 0.92442 0.93134 0.92305 0.95705 0.84906 0.84410 0.74966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -4.23 9.82 -40.63 -0.40 -4.63 16 3 C 0.51 6.94 7.89 34.46 0.27 7.21 16 4 O -0.50 -7.58 14.95 -26.60 -0.40 -7.97 16 5 C -0.16 -2.13 5.88 -104.86 -0.62 -2.75 16 6 C -0.03 -0.32 9.25 -39.19 -0.36 -0.68 16 7 C -0.09 -1.12 4.88 -104.68 -0.51 -1.64 16 8 C 0.09 1.17 5.11 -4.97 -0.03 1.15 16 9 N -0.53 -8.91 4.65 -236.11 -1.10 -10.00 16 10 C 0.05 1.01 5.15 -3.84 -0.02 0.99 16 11 C -0.10 -2.43 5.12 -26.65 -0.14 -2.57 16 12 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 13 C -0.51 -13.95 8.56 -34.44 -0.29 -14.24 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 16 N -0.89 -25.34 11.37 55.43 0.63 -24.71 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 C -0.11 -2.18 5.32 -26.65 -0.14 -2.32 16 22 C 0.06 1.04 5.46 -3.83 -0.02 1.02 16 23 C -0.06 -0.65 7.84 -39.53 -0.31 -0.96 16 24 C -0.16 -1.78 9.98 -39.48 -0.39 -2.17 16 25 C 0.17 2.10 6.72 -38.67 -0.26 1.84 16 26 O -0.48 -5.77 11.58 -40.49 -0.47 -6.24 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.14 1.64 7.61 -52.49 -0.40 1.24 16 31 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 32 H 0.04 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.04 5.75 -51.93 -0.30 0.74 16 35 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.86 8.02 -51.93 -0.42 0.44 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.13 1.40 7.96 -52.49 -0.42 0.98 16 44 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 45 H 0.39 2.92 9.06 45.56 0.41 3.34 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -32.02 366.36 -9.32 -41.34 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.04 Total: 1.52 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.05 Total: -11.17 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.47 Total: -34.71 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.27 Total: -18.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.02 -9.32 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231419832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.524 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds