Wall clock time and date at job start Tue Mar 31 2020 12:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34228 * 117.00453 * 2 1 4 4 O 1.20825 * 119.99919 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00245 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47354 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47354 * 179.97438 * 6 5 3 8 8 C 1.38289 * 119.96928 * 269.97866 * 7 6 5 9 9 C 1.38248 * 120.10948 * 179.97438 * 8 7 6 10 10 C 1.38169 * 120.05584 * 359.76003 * 9 8 7 11 11 C 1.38714 * 119.93969 * 0.53987 * 10 9 8 12 12 O 1.35899 * 120.05206 * 179.72221 * 11 10 9 13 13 C 1.42898 * 117.00204 * 5.20475 * 12 11 10 14 14 H 1.09000 * 110.63960 * 33.11849 * 13 12 11 15 15 C 1.55153 * 110.72242 * 156.26336 * 13 12 11 16 16 C 1.54911 * 101.58587 * 153.86667 * 15 13 12 17 17 N 1.47427 * 104.92552 * 322.93346 * 16 15 13 18 18 C 1.36932 * 125.65128 * 204.15479 * 17 16 15 19 19 H 1.08003 * 120.00626 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99828 * 0.02770 * 18 17 16 21 21 N 1.31611 * 120.00007 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47382 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47391 * 119.99759 * 22 20 18 25 25 H 1.48506 * 109.46832 * 239.99698 * 22 20 18 26 26 C 1.47295 * 108.55875 * 24.15816 * 17 16 15 27 27 C 1.38117 * 119.97324 * 89.99990 * 7 6 5 28 28 H 1.09001 * 109.47854 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47235 * 300.00356 * 1 2 3 30 30 H 1.08998 * 109.47472 * 59.99898 * 1 2 3 31 31 H 1.08998 * 109.47183 * 59.99663 * 5 3 2 32 32 H 1.08998 * 109.47201 * 299.99769 * 5 3 2 33 33 H 1.09008 * 109.47077 * 59.99613 * 6 5 3 34 34 H 1.08999 * 109.47338 * 299.99975 * 6 5 3 35 35 H 1.07997 * 119.94950 * 359.97438 * 8 7 6 36 36 H 1.08004 * 119.97091 * 180.02562 * 9 8 7 37 37 H 1.07992 * 120.02770 * 180.25614 * 10 9 8 38 38 H 1.09005 * 111.00231 * 35.79027 * 15 13 12 39 39 H 1.09004 * 111.00459 * 271.94024 * 15 13 12 40 40 H 1.08999 * 110.36854 * 81.82554 * 16 15 13 41 41 H 1.09004 * 110.36671 * 204.04537 * 16 15 13 42 42 H 0.97002 * 120.00236 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.85369 * 239.49861 * 26 17 16 44 44 H 1.08994 * 109.87525 * 118.35901 * 26 17 16 45 45 H 1.08001 * 120.02927 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7419 -0.0011 7 6 5.5051 2.8207 -0.0011 8 6 6.1949 2.8577 1.1970 9 6 7.5755 2.9295 1.2004 10 6 8.2699 2.9594 0.0062 11 6 7.5799 2.9287 -1.1968 12 8 8.2603 2.9637 -2.3726 13 6 9.6866 2.9164 -2.2986 14 1 10.0074 2.3082 -1.4529 15 6 10.2874 2.3759 -3.6230 16 6 11.6953 3.0221 -3.6125 17 7 11.4928 4.3642 -3.0370 18 6 12.3014 5.4503 -3.2408 19 1 12.0663 6.3943 -2.7717 20 6 13.4234 5.3381 -4.0504 21 7 13.7102 4.1876 -4.6217 22 14 14.5269 6.8195 -4.3279 23 1 13.9899 7.9840 -3.5791 24 1 15.8984 6.5120 -3.8485 25 1 14.5695 7.1405 -5.7772 26 6 10.2761 4.3398 -2.2071 27 6 6.1943 2.8564 -1.1975 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 3.6108 3.2363 0.8889 34 1 3.6102 3.2359 -0.8910 35 1 5.6542 2.8305 2.1315 36 1 8.1120 2.9579 2.1373 37 1 9.3485 3.0113 0.0094 38 1 9.7082 2.7151 -4.4819 39 1 10.3567 1.2882 -3.6053 40 1 12.3749 2.4407 -2.9894 41 1 12.0848 3.0995 -4.6276 42 1 14.4944 4.1090 -5.1872 43 1 9.5553 5.0646 -2.5856 44 1 10.5286 4.5707 -1.1723 45 1 5.6551 2.8274 -2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233652583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:28 Heat of formation + Delta-G solvation = -75.831214 kcal Electronic energy + Delta-G solvation = -25710.709331 eV Core-core repulsion = 21887.356750 eV Total energy + Delta-G solvation = -3823.352581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84502 -40.14271 -38.21304 -36.94517 -36.18331 -34.06137 -32.37724 -30.60745 -29.91058 -29.09868 -28.04273 -27.34195 -25.06728 -24.52106 -22.51103 -21.86170 -20.94351 -20.27403 -19.70960 -18.18285 -17.53880 -17.07769 -16.99646 -16.86554 -15.98414 -15.82064 -15.14869 -14.76202 -14.64172 -14.31157 -13.90907 -13.81309 -13.66469 -13.28972 -13.13842 -12.91706 -12.71126 -12.47716 -12.36968 -11.86616 -11.75428 -11.68604 -11.52361 -11.38711 -11.18455 -11.03675 -10.94209 -10.83906 -10.76532 -10.42638 -10.23253 -10.05197 -9.84105 -9.63732 -8.85360 -8.71318 -8.04905 -6.91348 -5.71016 -3.13262 1.26660 1.49491 1.85169 2.37355 3.37456 3.41605 3.44687 3.47418 3.75184 4.31489 4.45106 4.62101 4.66258 4.70866 4.78603 4.86813 4.88003 5.09119 5.12446 5.17824 5.21246 5.28867 5.30447 5.34898 5.44624 5.51819 5.59960 5.66067 5.74798 5.79913 5.99992 6.04725 6.22599 6.34196 6.39442 6.45572 6.46356 6.54863 6.58507 6.61093 6.88469 7.37647 7.40206 7.56749 7.69725 7.79394 8.28388 9.15566 9.75635 10.39157 11.33377 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.002028 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.714855 B =13805.831810 C =14069.412919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.508 6.508 5 C -0.109 4.109 6 C -0.066 4.066 7 C -0.053 4.053 8 C -0.162 4.162 9 C -0.077 4.077 10 C -0.209 4.209 11 C 0.144 3.856 12 O -0.304 6.304 13 C 0.069 3.931 14 H 0.078 0.922 15 C -0.136 4.136 16 C 0.152 3.848 17 N -0.601 5.601 18 C -0.222 4.222 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.917 3.083 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.119 3.881 27 C -0.154 4.154 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.114 0.886 42 H 0.253 0.747 43 H 0.036 0.964 44 H 0.026 0.974 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.581 -9.938 11.060 26.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.395 6.395 5 C -0.146 4.146 6 C -0.103 4.103 7 C -0.053 4.053 8 C -0.180 4.180 9 C -0.095 4.095 10 C -0.227 4.227 11 C 0.098 3.902 12 O -0.217 6.217 13 C 0.013 3.987 14 H 0.096 0.904 15 C -0.175 4.175 16 C 0.027 3.973 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.008 4.008 27 C -0.172 4.172 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.034 0.966 41 H 0.132 0.868 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.690 -9.563 10.745 26.026 hybrid contribution 0.597 0.780 0.125 0.990 sum -21.092 -8.783 10.870 25.302 Atomic orbital electron populations 1.23271 0.76296 1.03732 1.02601 1.86519 1.23519 1.33644 1.84123 1.23926 0.92343 0.81256 0.72079 1.90684 1.67340 1.36319 1.45180 1.21433 0.86840 0.99792 1.06564 1.20372 0.91143 0.94013 1.04791 1.19414 0.94408 0.98871 0.92580 1.20855 0.94169 1.05735 0.97222 1.20916 0.94029 0.97093 0.97428 1.21448 1.00958 1.08050 0.92259 1.19089 0.91750 0.93915 0.85440 1.86164 1.20951 1.87148 1.27407 1.23689 0.76216 0.98331 1.00473 0.90434 1.23211 0.99693 0.99508 0.95060 1.22001 0.89081 0.83685 1.02539 1.44444 1.25515 1.08409 1.54499 1.19134 1.02746 0.88935 1.24227 0.90292 1.24804 0.98498 0.97427 0.99924 1.69761 1.28282 1.22818 1.36295 0.85959 0.80256 0.81405 0.77645 1.20477 1.21685 1.21643 1.21737 0.90427 0.93615 0.94975 1.20277 0.91136 1.07405 0.98407 0.88071 0.91886 0.91836 0.87152 0.87274 0.89856 0.89815 0.86215 0.85911 0.85001 0.90784 0.91511 0.96566 0.86833 0.93637 0.94631 0.95598 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.02 10.56 -39.25 -0.41 -3.43 16 3 C 0.46 4.21 7.96 36.00 0.29 4.50 16 4 O -0.51 -6.03 15.73 -18.75 -0.29 -6.32 16 5 C -0.11 -0.79 5.79 -27.89 -0.16 -0.95 16 6 C -0.07 -0.57 4.63 -27.89 -0.13 -0.70 16 7 C -0.05 -0.56 5.13 -104.65 -0.54 -1.10 16 8 C -0.16 -1.67 9.70 -39.56 -0.38 -2.06 16 9 C -0.08 -0.88 10.04 -39.60 -0.40 -1.28 16 10 C -0.21 -2.89 8.91 -39.43 -0.35 -3.24 16 11 C 0.14 2.17 6.67 -39.22 -0.26 1.90 16 12 O -0.30 -5.28 9.86 -19.42 -0.19 -5.47 16 13 C 0.07 1.26 2.74 -24.90 -0.07 1.19 16 14 H 0.08 1.30 6.25 -51.93 -0.32 0.98 16 15 C -0.14 -2.62 6.81 -24.58 -0.17 -2.79 16 16 C 0.15 3.64 5.88 -2.53 -0.01 3.63 16 17 N -0.60 -15.52 3.40 -169.85 -0.58 -16.10 16 18 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 19 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 22 Si 0.92 22.01 29.55 -169.99 -5.02 16.98 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.12 2.56 6.82 -2.91 -0.02 2.54 16 27 C -0.15 -1.96 9.64 -39.44 -0.38 -2.34 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.71 8.04 -51.92 -0.42 0.29 16 34 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.13 1.87 5.63 -52.49 -0.30 1.58 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.11 3.05 5.87 -51.93 -0.30 2.75 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 44 H 0.03 0.55 7.82 -51.93 -0.41 0.14 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 372.72 15.07 5.62 5.62 Total: -1.00 -32.17 372.72 -8.88 -41.05 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.78 Total: -0.04 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -1.77 Total: -6.21 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.02 Total: -42.17 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.90 Total: -15.23 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.17 -8.88 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233652583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.781 kcal (2) G-P(sol) polarization free energy of solvation -32.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds