Wall clock time and date at job start Tue Mar 31 2020 12:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34228 * 117.00453 * 2 1 4 4 O 1.20825 * 119.99919 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00245 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47354 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47354 * 179.97438 * 6 5 3 8 8 C 1.38289 * 119.96928 * 269.97866 * 7 6 5 9 9 C 1.38248 * 120.10948 * 179.97438 * 8 7 6 10 10 C 1.38169 * 120.05584 * 359.76003 * 9 8 7 11 11 C 1.38714 * 119.93969 * 0.53987 * 10 9 8 12 12 O 1.35899 * 120.05206 * 179.72221 * 11 10 9 13 13 C 1.42898 * 117.00204 * 5.20475 * 12 11 10 14 14 H 1.09000 * 110.63960 * 33.11849 * 13 12 11 15 15 C 1.55153 * 110.72242 * 156.26336 * 13 12 11 16 16 C 1.54911 * 101.58587 * 153.86667 * 15 13 12 17 17 N 1.47427 * 104.92552 * 322.93346 * 16 15 13 18 18 C 1.36932 * 125.65128 * 204.15479 * 17 16 15 19 19 H 1.08003 * 120.00626 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99828 * 0.02770 * 18 17 16 21 21 N 1.31611 * 120.00007 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99840 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47382 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47391 * 119.99759 * 22 20 18 25 25 H 1.48506 * 109.46832 * 239.99698 * 22 20 18 26 26 C 1.47295 * 108.55875 * 24.15816 * 17 16 15 27 27 C 1.38117 * 119.97324 * 89.99990 * 7 6 5 28 28 H 1.09001 * 109.47854 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47235 * 300.00356 * 1 2 3 30 30 H 1.08998 * 109.47472 * 59.99898 * 1 2 3 31 31 H 1.08998 * 109.47183 * 59.99663 * 5 3 2 32 32 H 1.08998 * 109.47201 * 299.99769 * 5 3 2 33 33 H 1.09008 * 109.47077 * 59.99613 * 6 5 3 34 34 H 1.08999 * 109.47338 * 299.99975 * 6 5 3 35 35 H 1.07997 * 119.94950 * 359.97438 * 8 7 6 36 36 H 1.08004 * 119.97091 * 180.02562 * 9 8 7 37 37 H 1.07992 * 120.02770 * 180.25614 * 10 9 8 38 38 H 1.09005 * 111.00231 * 35.79027 * 15 13 12 39 39 H 1.09004 * 111.00459 * 271.94024 * 15 13 12 40 40 H 1.08999 * 110.36854 * 81.82554 * 16 15 13 41 41 H 1.09004 * 110.36671 * 204.04537 * 16 15 13 42 42 H 0.97002 * 120.00236 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.85369 * 239.49861 * 26 17 16 44 44 H 1.08994 * 109.87525 * 118.35901 * 26 17 16 45 45 H 1.08001 * 120.02927 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7419 -0.0011 7 6 5.5051 2.8207 -0.0011 8 6 6.1949 2.8577 1.1970 9 6 7.5755 2.9295 1.2004 10 6 8.2699 2.9594 0.0062 11 6 7.5799 2.9287 -1.1968 12 8 8.2603 2.9637 -2.3726 13 6 9.6866 2.9164 -2.2986 14 1 10.0074 2.3082 -1.4529 15 6 10.2874 2.3759 -3.6230 16 6 11.6953 3.0221 -3.6125 17 7 11.4928 4.3642 -3.0370 18 6 12.3014 5.4503 -3.2408 19 1 12.0663 6.3943 -2.7717 20 6 13.4234 5.3381 -4.0504 21 7 13.7102 4.1876 -4.6217 22 14 14.5269 6.8195 -4.3279 23 1 13.9899 7.9840 -3.5791 24 1 15.8984 6.5120 -3.8485 25 1 14.5695 7.1405 -5.7772 26 6 10.2761 4.3398 -2.2071 27 6 6.1943 2.8564 -1.1975 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9557 0.7808 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 3.6108 3.2363 0.8889 34 1 3.6102 3.2359 -0.8910 35 1 5.6542 2.8305 2.1315 36 1 8.1120 2.9579 2.1373 37 1 9.3485 3.0113 0.0094 38 1 9.7082 2.7151 -4.4819 39 1 10.3567 1.2882 -3.6053 40 1 12.3749 2.4407 -2.9894 41 1 12.0848 3.0995 -4.6276 42 1 14.4944 4.1090 -5.1872 43 1 9.5553 5.0646 -2.5856 44 1 10.5286 4.5707 -1.1723 45 1 5.6551 2.8274 -2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233652583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:27 Heat of formation + Delta-G solvation = -93.010327 kcal Electronic energy + Delta-G solvation = -25711.454274 eV Core-core repulsion = 21887.356750 eV Total energy + Delta-G solvation = -3824.097524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56476 -41.25253 -39.44229 -37.87893 -37.51300 -34.88451 -34.30226 -31.67538 -31.17420 -30.49685 -29.08677 -28.53711 -26.57438 -25.72237 -23.49572 -23.01075 -22.13369 -21.74801 -20.93312 -19.12155 -19.00878 -18.44189 -17.68076 -17.51138 -17.17626 -16.82571 -16.70340 -16.52549 -15.65019 -15.47472 -15.12995 -14.91211 -14.58827 -14.41652 -14.20278 -14.03038 -13.82354 -13.69160 -13.61170 -13.19209 -13.01802 -12.90996 -12.72817 -12.64734 -12.48497 -12.33187 -12.03247 -12.00021 -11.92321 -11.77588 -11.72766 -11.60394 -11.49194 -11.36725 -10.80110 -9.77275 -9.11251 -8.96153 -7.82260 -5.27831 0.34418 0.53424 1.17560 1.46169 1.47180 1.57679 1.79415 2.17554 2.48155 2.81912 3.28625 3.59008 3.63962 3.67900 3.90107 3.92479 3.95591 4.00874 4.07070 4.18795 4.29030 4.32538 4.34206 4.43866 4.46099 4.56567 4.59881 4.63452 4.70512 4.74017 4.85634 4.90457 4.94770 4.99435 5.09860 5.18083 5.40292 5.41151 5.44450 5.54565 5.55439 5.65894 5.72926 5.90844 6.24574 6.51877 6.71963 7.05227 7.69774 8.33233 9.20091 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.002028 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.714855 B =13805.831810 C =14069.412919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.541 6.541 5 C -0.103 4.103 6 C -0.061 4.061 7 C -0.044 4.044 8 C -0.151 4.151 9 C -0.078 4.078 10 C -0.222 4.222 11 C 0.111 3.889 12 O -0.317 6.317 13 C 0.088 3.912 14 H 0.095 0.905 15 C -0.123 4.123 16 C 0.154 3.846 17 N -0.624 5.624 18 C -0.243 4.243 19 H 0.079 0.921 20 C -0.064 4.064 21 N -0.947 5.947 22 Si 0.984 3.016 23 H -0.269 1.269 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.118 3.882 27 C -0.160 4.160 28 H 0.129 0.871 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.123 0.877 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.001 0.999 41 H 0.082 0.918 42 H 0.250 0.750 43 H 0.023 0.977 44 H 0.032 0.968 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.081 -10.621 12.856 28.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.308 3.692 4 O -0.431 6.431 5 C -0.141 4.141 6 C -0.098 4.098 7 C -0.044 4.044 8 C -0.169 4.169 9 C -0.096 4.096 10 C -0.241 4.241 11 C 0.066 3.934 12 O -0.231 6.231 13 C 0.032 3.968 14 H 0.113 0.887 15 C -0.162 4.162 16 C 0.029 3.971 17 N -0.351 5.351 18 C -0.372 4.372 19 H 0.097 0.903 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.193 1.193 24 H -0.215 1.215 25 H -0.216 1.216 26 C -0.008 4.008 27 C -0.179 4.179 28 H 0.147 0.853 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.141 0.859 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.019 0.981 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.223 -10.265 12.561 28.328 hybrid contribution 0.915 0.970 -0.342 1.376 sum -22.309 -9.295 12.219 27.081 Atomic orbital electron populations 1.23522 0.75014 1.05591 1.02451 1.86512 1.24871 1.33172 1.83724 1.24237 0.92951 0.80973 0.71031 1.90675 1.68178 1.37336 1.46908 1.21439 0.85642 0.98931 1.08050 1.20323 0.89598 0.95145 1.04761 1.19600 0.95299 0.97555 0.91990 1.21247 0.93873 1.03490 0.98317 1.21224 0.94735 0.96179 0.97441 1.21494 1.00698 1.09012 0.92902 1.19376 0.92513 0.96458 0.85005 1.86112 1.19884 1.88029 1.29032 1.23333 0.77195 0.96027 1.00263 0.88689 1.23019 0.96527 1.01009 0.95609 1.21784 0.91657 0.83464 1.00176 1.44732 1.26436 1.08504 1.55433 1.19466 1.03480 0.89817 1.24412 0.90309 1.25657 0.99924 1.00213 0.99873 1.69999 1.28475 1.24496 1.36660 0.84938 0.78117 0.78499 0.77302 1.19319 1.21540 1.21615 1.21830 0.88817 0.95797 0.94311 1.20457 0.90390 1.07419 0.99601 0.85275 0.91886 0.92201 0.86192 0.85143 0.89242 0.90624 0.83089 0.83576 0.85938 0.91330 0.88363 0.98061 0.89999 0.94011 0.95922 0.95045 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.37 -5.42 10.56 -51.39 -0.54 -5.97 16 3 C 0.46 7.64 7.96 71.24 0.57 8.21 16 4 O -0.54 -12.24 15.73 21.97 0.35 -11.90 16 5 C -0.10 -1.22 5.79 29.85 0.17 -1.05 16 6 C -0.06 -0.91 4.63 29.85 0.14 -0.78 16 7 C -0.04 -0.83 5.13 -19.88 -0.10 -0.93 16 8 C -0.15 -2.60 9.70 22.28 0.22 -2.39 16 9 C -0.08 -1.58 10.04 22.26 0.22 -1.35 16 10 C -0.22 -5.88 8.91 22.37 0.20 -5.68 16 11 C 0.11 3.25 6.67 22.51 0.15 3.40 16 12 O -0.32 -10.91 9.86 -92.42 -0.91 -11.82 16 13 C 0.09 3.21 2.74 31.78 0.09 3.29 16 14 H 0.10 3.11 6.25 -2.39 -0.01 3.09 16 15 C -0.12 -4.73 6.81 31.99 0.22 -4.51 16 16 C 0.15 7.61 5.88 86.86 0.51 8.12 16 17 N -0.62 -33.00 3.40 -691.28 -2.35 -35.36 16 18 C -0.24 -13.90 10.28 84.03 0.86 -13.04 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 21 N -0.95 -56.10 10.09 21.65 0.22 -55.88 16 22 Si 0.98 45.80 29.55 68.60 2.03 47.82 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 26 C 0.12 5.16 6.82 86.68 0.59 5.76 16 27 C -0.16 -3.87 9.64 22.36 0.22 -3.65 16 28 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.63 8.13 -2.38 -0.02 0.61 16 30 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.27 8.04 -2.38 -0.02 1.25 16 34 H 0.08 1.28 8.04 -2.39 -0.02 1.27 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.12 3.40 5.63 -2.91 -0.02 3.38 16 38 H 0.07 2.69 8.14 -2.38 -0.02 2.68 16 39 H 0.10 3.13 8.14 -2.38 -0.02 3.11 16 40 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.08 4.58 5.87 -2.39 -0.01 4.57 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 43 H 0.02 1.04 8.06 -2.39 -0.02 1.02 16 44 H 0.03 1.33 7.82 -2.39 -0.02 1.32 16 45 H 0.13 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -70.98 372.72 5.48 -65.50 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.98 Total: 13.91 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.71 Total: -6.31 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -2.13 Total: -91.23 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.11 Total: -29.68 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -70.98 5.48 -65.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233652583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.509 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds