Wall clock time and date at job start Tue Mar 31 2020 12:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00108 * 2 1 4 4 O 1.20824 * 120.00071 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99764 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46939 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.47379 * 180.02562 * 6 5 3 8 8 C 1.38285 * 119.97274 * 89.99624 * 7 6 5 9 9 C 1.38247 * 120.10789 * 180.02562 * 8 7 6 10 10 C 1.38161 * 120.05773 * 359.97438 * 9 8 7 11 11 C 1.38709 * 119.94575 * 0.02562 * 10 9 8 12 12 O 1.35905 * 120.06134 * 180.02562 * 11 10 9 13 13 C 1.42906 * 116.99406 * 354.66119 * 12 11 10 14 14 H 1.09001 * 110.64157 * 321.83483 * 13 12 11 15 15 C 1.55158 * 110.71645 * 198.49875 * 13 12 11 16 16 C 1.55127 * 101.48310 * 205.97278 * 15 13 12 17 17 N 1.47420 * 104.72708 * 37.29373 * 16 15 13 18 18 C 1.36932 * 125.65182 * 155.81661 * 17 16 15 19 19 H 1.07996 * 120.00271 * 179.69463 * 18 17 16 20 20 C 1.38820 * 119.99670 * 359.69576 * 18 17 16 21 21 N 1.31617 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99789 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47228 * 270.00241 * 22 20 18 24 24 H 1.48500 * 109.47279 * 30.00411 * 22 20 18 25 25 H 1.48504 * 109.47015 * 150.00030 * 22 20 18 26 26 C 1.47027 * 108.70027 * 335.55440 * 17 16 15 27 27 C 1.38124 * 119.96642 * 270.25706 * 7 6 5 28 28 H 1.09000 * 109.47439 * 300.00417 * 1 2 3 29 29 H 1.09001 * 109.46611 * 60.00217 * 1 2 3 30 30 H 1.08998 * 109.47181 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47240 * 60.00340 * 5 3 2 32 32 H 1.08995 * 109.47437 * 299.99424 * 5 3 2 33 33 H 1.08996 * 109.47394 * 59.99792 * 6 5 3 34 34 H 1.09000 * 109.47303 * 299.99973 * 6 5 3 35 35 H 1.07993 * 119.94687 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.97149 * 180.02562 * 9 8 7 37 37 H 1.08003 * 120.03363 * 180.02562 * 10 9 8 38 38 H 1.08999 * 111.00457 * 324.20625 * 15 13 12 39 39 H 1.08994 * 111.00343 * 88.02445 * 15 13 12 40 40 H 1.09008 * 110.49551 * 278.44973 * 16 15 13 41 41 H 1.08998 * 110.34688 * 156.06237 * 16 15 13 42 42 H 0.96992 * 120.00163 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.88141 * 120.70401 * 26 17 16 44 44 H 1.09000 * 109.87940 * 241.86367 * 26 17 16 45 45 H 1.08000 * 120.03461 * 0.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 6 5.5052 2.8208 -0.0002 8 6 6.1951 2.8563 -1.1982 9 6 7.5757 2.9281 -1.2015 10 6 8.2695 2.9652 -0.0073 11 6 7.5799 2.9298 1.1956 12 8 8.2600 2.9666 2.3717 13 6 9.6865 2.9233 2.2976 14 1 10.0098 2.2454 1.5076 15 6 10.2947 2.5100 3.6639 16 6 11.7005 3.1612 3.5857 17 7 11.4812 4.4444 2.8939 18 6 12.2811 5.5514 2.9928 19 1 12.0362 6.4458 2.4394 20 6 13.4069 5.5239 3.8046 21 7 13.7051 4.4340 4.4795 22 14 14.4985 7.0338 3.9391 23 1 15.5541 6.9758 2.8963 24 1 13.6782 8.2565 3.7457 25 1 15.1308 7.0693 5.2823 26 6 10.2649 4.3366 2.0750 27 6 6.1944 2.8522 1.1963 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6101 3.2367 0.8892 34 1 3.6109 3.2355 -0.8906 35 1 5.6545 2.8278 -2.1326 36 1 8.1122 2.9561 -2.1384 37 1 9.3481 3.0218 -0.0104 38 1 9.7152 2.9218 4.4901 39 1 10.3716 1.4259 3.7454 40 1 12.3811 2.5322 3.0118 41 1 12.0949 3.3328 4.5873 42 1 14.4914 4.4149 5.0470 43 1 9.5395 5.0875 2.3881 44 1 10.5131 4.4741 1.0226 45 1 5.6554 2.8198 2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233652584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:33 Heat of formation + Delta-G solvation = -76.340702 kcal Electronic energy + Delta-G solvation = -25736.326913 eV Core-core repulsion = 21912.952239 eV Total energy + Delta-G solvation = -3823.374674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84255 -40.14140 -38.21264 -36.94212 -36.18252 -34.05669 -32.37397 -30.59704 -29.92176 -29.08756 -28.04456 -27.34284 -25.04008 -24.52939 -22.49844 -21.84497 -20.94103 -20.27747 -19.72538 -18.16208 -17.50718 -17.07976 -16.99750 -16.85945 -15.98931 -15.82416 -15.18782 -14.75899 -14.63972 -14.29409 -13.90675 -13.79971 -13.66696 -13.28784 -13.13410 -12.91674 -12.69386 -12.46700 -12.36947 -11.87678 -11.75156 -11.68162 -11.47949 -11.38188 -11.18316 -11.03584 -10.92971 -10.83240 -10.76051 -10.45188 -10.24184 -10.06776 -9.85370 -9.63431 -8.84254 -8.71197 -8.04416 -6.91460 -5.70940 -3.13426 1.27764 1.50351 1.85409 2.37613 3.37860 3.41811 3.44119 3.47608 3.76180 4.31854 4.45185 4.62613 4.66688 4.70987 4.78755 4.87389 4.88821 5.11774 5.12656 5.17932 5.21511 5.28967 5.31231 5.35268 5.44885 5.52096 5.59736 5.66475 5.75363 5.80640 6.00390 6.05335 6.23132 6.34485 6.39289 6.45503 6.46801 6.55671 6.58645 6.61295 6.89442 7.37868 7.39811 7.56565 7.69791 7.79411 8.28724 9.15609 9.75842 10.38928 11.33262 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.032096 B = 0.002040 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.174872 B =13720.665031 C =14002.331923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.508 6.508 5 C -0.109 4.109 6 C -0.066 4.066 7 C -0.053 4.053 8 C -0.161 4.161 9 C -0.077 4.077 10 C -0.207 4.207 11 C 0.144 3.856 12 O -0.305 6.305 13 C 0.070 3.930 14 H 0.076 0.924 15 C -0.135 4.135 16 C 0.152 3.848 17 N -0.601 5.601 18 C -0.224 4.224 19 H 0.079 0.921 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.917 3.083 23 H -0.288 1.288 24 H -0.281 1.281 25 H -0.289 1.289 26 C 0.118 3.882 27 C -0.154 4.154 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.017 0.983 41 H 0.115 0.885 42 H 0.253 0.747 43 H 0.035 0.965 44 H 0.026 0.974 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.488 -10.465 -10.409 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.395 6.395 5 C -0.146 4.146 6 C -0.103 4.103 7 C -0.053 4.053 8 C -0.180 4.180 9 C -0.095 4.095 10 C -0.226 4.226 11 C 0.098 3.902 12 O -0.217 6.217 13 C 0.014 3.986 14 H 0.094 0.906 15 C -0.173 4.173 16 C 0.027 3.973 17 N -0.328 5.328 18 C -0.352 4.352 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.572 5.572 22 Si 0.748 3.252 23 H -0.216 1.216 24 H -0.206 1.206 25 H -0.216 1.216 26 C -0.009 4.009 27 C -0.172 4.172 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.035 0.965 41 H 0.132 0.868 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -21.599 -10.082 -10.087 25.883 hybrid contribution 0.594 0.794 -0.224 1.017 sum -21.006 -9.287 -10.312 25.176 Atomic orbital electron populations 1.23273 0.76296 1.03728 1.02601 1.86522 1.23519 1.33646 1.84126 1.23926 0.92346 0.81256 0.72080 1.90684 1.67337 1.36321 1.45177 1.21435 0.86835 0.99801 1.06558 1.20371 0.91154 0.94001 1.04785 1.19413 0.94396 0.98926 0.92583 1.20852 0.94165 1.05721 0.97216 1.20917 0.94030 0.97116 0.97444 1.21477 1.00995 1.07882 0.92241 1.19084 0.91735 0.93961 0.85446 1.86165 1.20933 1.87198 1.27439 1.23676 0.76212 0.98284 1.00447 0.90589 1.23227 0.99586 1.00078 0.94430 1.22064 0.89100 0.84687 1.01447 1.44382 1.25422 1.11619 1.51398 1.19088 1.02901 0.90539 1.22650 0.90358 1.24805 0.98463 0.97801 0.99536 1.69743 1.28014 1.26305 1.33092 0.86030 0.80362 0.81749 0.77108 1.21570 1.20633 1.21552 1.21744 0.90525 0.93682 0.94909 1.20278 0.91136 1.07409 0.98394 0.91835 0.91885 0.88074 0.87279 0.87152 0.89822 0.89861 0.86224 0.85915 0.84980 0.90747 0.91495 0.96536 0.86752 0.93577 0.94693 0.95660 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.03 10.57 -39.25 -0.41 -3.44 16 3 C 0.46 4.23 7.96 36.00 0.29 4.51 16 4 O -0.51 -6.05 15.73 -18.75 -0.29 -6.34 16 5 C -0.11 -0.79 5.79 -27.89 -0.16 -0.96 16 6 C -0.07 -0.58 4.63 -27.88 -0.13 -0.71 16 7 C -0.05 -0.57 5.13 -104.64 -0.54 -1.11 16 8 C -0.16 -1.69 9.70 -39.56 -0.38 -2.07 16 9 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 10 C -0.21 -2.91 8.77 -39.44 -0.35 -3.25 16 11 C 0.14 2.18 6.63 -39.21 -0.26 1.92 16 12 O -0.30 -5.30 9.88 -19.44 -0.19 -5.49 16 13 C 0.07 1.28 2.77 -24.90 -0.07 1.21 16 14 H 0.08 1.28 6.58 -51.93 -0.34 0.94 16 15 C -0.13 -2.59 6.82 -24.46 -0.17 -2.76 16 16 C 0.15 3.64 5.91 -2.41 -0.01 3.63 16 17 N -0.60 -15.50 3.39 -169.93 -0.58 -16.08 16 18 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -26.59 10.08 55.49 0.56 -26.04 16 22 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.12 2.53 6.51 -3.06 -0.02 2.51 16 27 C -0.15 -1.97 9.64 -39.43 -0.38 -2.35 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 34 H 0.08 0.71 8.04 -51.93 -0.42 0.30 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.13 1.91 5.31 -52.48 -0.28 1.63 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.11 3.07 5.85 -51.93 -0.30 2.77 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.04 0.79 8.06 -51.93 -0.42 0.37 16 44 H 0.03 0.53 7.43 -51.93 -0.39 0.15 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -32.11 371.89 -8.86 -40.97 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -6.76 Total: 0.09 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.76 Total: -6.25 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.02 Total: -42.11 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.90 Total: -15.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.11 -8.86 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233652584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.374 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds