Wall clock time and date at job start Tue Mar 31 2020 12:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00108 * 2 1 4 4 O 1.20824 * 120.00071 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99764 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46939 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.47379 * 180.02562 * 6 5 3 8 8 C 1.38285 * 119.97274 * 89.99624 * 7 6 5 9 9 C 1.38247 * 120.10789 * 180.02562 * 8 7 6 10 10 C 1.38161 * 120.05773 * 359.97438 * 9 8 7 11 11 C 1.38709 * 119.94575 * 0.02562 * 10 9 8 12 12 O 1.35905 * 120.06134 * 180.02562 * 11 10 9 13 13 C 1.42906 * 116.99406 * 354.66119 * 12 11 10 14 14 H 1.09001 * 110.64157 * 321.83483 * 13 12 11 15 15 C 1.55158 * 110.71645 * 198.49875 * 13 12 11 16 16 C 1.55127 * 101.48310 * 205.97278 * 15 13 12 17 17 N 1.47420 * 104.72708 * 37.29373 * 16 15 13 18 18 C 1.36932 * 125.65182 * 155.81661 * 17 16 15 19 19 H 1.07996 * 120.00271 * 179.69463 * 18 17 16 20 20 C 1.38820 * 119.99670 * 359.69576 * 18 17 16 21 21 N 1.31617 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99789 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47228 * 270.00241 * 22 20 18 24 24 H 1.48500 * 109.47279 * 30.00411 * 22 20 18 25 25 H 1.48504 * 109.47015 * 150.00030 * 22 20 18 26 26 C 1.47027 * 108.70027 * 335.55440 * 17 16 15 27 27 C 1.38124 * 119.96642 * 270.25706 * 7 6 5 28 28 H 1.09000 * 109.47439 * 300.00417 * 1 2 3 29 29 H 1.09001 * 109.46611 * 60.00217 * 1 2 3 30 30 H 1.08998 * 109.47181 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47240 * 60.00340 * 5 3 2 32 32 H 1.08995 * 109.47437 * 299.99424 * 5 3 2 33 33 H 1.08996 * 109.47394 * 59.99792 * 6 5 3 34 34 H 1.09000 * 109.47303 * 299.99973 * 6 5 3 35 35 H 1.07993 * 119.94687 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.97149 * 180.02562 * 9 8 7 37 37 H 1.08003 * 120.03363 * 180.02562 * 10 9 8 38 38 H 1.08999 * 111.00457 * 324.20625 * 15 13 12 39 39 H 1.08994 * 111.00343 * 88.02445 * 15 13 12 40 40 H 1.09008 * 110.49551 * 278.44973 * 16 15 13 41 41 H 1.08998 * 110.34688 * 156.06237 * 16 15 13 42 42 H 0.96992 * 120.00163 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.88141 * 120.70401 * 26 17 16 44 44 H 1.09000 * 109.87940 * 241.86367 * 26 17 16 45 45 H 1.08000 * 120.03461 * 0.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7419 -0.0002 7 6 5.5052 2.8208 -0.0002 8 6 6.1951 2.8563 -1.1982 9 6 7.5757 2.9281 -1.2015 10 6 8.2695 2.9652 -0.0073 11 6 7.5799 2.9298 1.1956 12 8 8.2600 2.9666 2.3717 13 6 9.6865 2.9233 2.2976 14 1 10.0098 2.2454 1.5076 15 6 10.2947 2.5100 3.6639 16 6 11.7005 3.1612 3.5857 17 7 11.4812 4.4444 2.8939 18 6 12.2811 5.5514 2.9928 19 1 12.0362 6.4458 2.4394 20 6 13.4069 5.5239 3.8046 21 7 13.7051 4.4340 4.4795 22 14 14.4985 7.0338 3.9391 23 1 15.5541 6.9758 2.8963 24 1 13.6782 8.2565 3.7457 25 1 15.1308 7.0693 5.2823 26 6 10.2649 4.3366 2.0750 27 6 6.1944 2.8522 1.1963 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 3.6101 3.2367 0.8892 34 1 3.6109 3.2355 -0.8906 35 1 5.6545 2.8278 -2.1326 36 1 8.1122 2.9561 -2.1384 37 1 9.3481 3.0218 -0.0104 38 1 9.7152 2.9218 4.4901 39 1 10.3716 1.4259 3.7454 40 1 12.3811 2.5322 3.0118 41 1 12.0949 3.3328 4.5873 42 1 14.4914 4.4149 5.0470 43 1 9.5395 5.0875 2.3881 44 1 10.5131 4.4741 1.0226 45 1 5.6554 2.8198 2.1317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233652584.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:32 Heat of formation + Delta-G solvation = -93.489006 kcal Electronic energy + Delta-G solvation = -25737.070519 eV Core-core repulsion = 21912.952239 eV Total energy + Delta-G solvation = -3824.118281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56596 -41.25967 -39.44526 -37.87791 -37.51296 -34.88428 -34.29999 -31.67498 -31.19220 -30.47888 -29.10343 -28.52570 -26.56628 -25.71565 -23.50306 -22.99280 -22.12716 -21.75424 -20.94928 -19.10868 -18.99940 -18.42714 -17.68075 -17.50993 -17.20482 -16.82171 -16.69619 -16.57131 -15.65480 -15.45608 -15.13016 -14.91184 -14.58720 -14.44282 -14.18955 -13.99338 -13.83292 -13.68832 -13.60438 -13.19584 -13.01365 -12.90074 -12.71696 -12.64685 -12.46786 -12.33122 -12.04720 -12.02570 -11.92411 -11.77635 -11.73232 -11.60750 -11.48754 -11.38957 -10.79403 -9.77160 -9.11294 -8.96173 -7.82003 -5.27816 0.34536 0.53354 1.17628 1.46120 1.48015 1.56918 1.79470 2.18035 2.48223 2.81965 3.28630 3.59653 3.63551 3.67630 3.90572 3.92305 3.96185 4.01017 4.07292 4.18441 4.28554 4.32563 4.34174 4.43974 4.45954 4.56549 4.59468 4.63461 4.69990 4.74021 4.85441 4.90417 4.94902 4.99844 5.09966 5.18130 5.40213 5.41168 5.44311 5.54387 5.55586 5.65849 5.73049 5.90836 6.24988 6.51535 6.72014 7.05369 7.70229 8.33169 9.19992 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.032096 B = 0.002040 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.174872 B =13720.665031 C =14002.331923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.541 6.541 5 C -0.103 4.103 6 C -0.061 4.061 7 C -0.045 4.045 8 C -0.151 4.151 9 C -0.079 4.079 10 C -0.222 4.222 11 C 0.111 3.889 12 O -0.317 6.317 13 C 0.089 3.911 14 H 0.093 0.907 15 C -0.122 4.122 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.984 3.016 23 H -0.284 1.284 24 H -0.272 1.272 25 H -0.290 1.290 26 C 0.118 3.882 27 C -0.160 4.160 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.002 0.998 41 H 0.083 0.917 42 H 0.250 0.750 43 H 0.021 0.979 44 H 0.031 0.969 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.008 -11.208 -12.149 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.308 3.692 4 O -0.431 6.431 5 C -0.141 4.141 6 C -0.098 4.098 7 C -0.045 4.045 8 C -0.169 4.169 9 C -0.096 4.096 10 C -0.240 4.240 11 C 0.066 3.934 12 O -0.231 6.231 13 C 0.033 3.967 14 H 0.111 0.889 15 C -0.160 4.160 16 C 0.029 3.971 17 N -0.351 5.351 18 C -0.374 4.374 19 H 0.096 0.904 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.211 1.211 24 H -0.197 1.197 25 H -0.216 1.216 26 C -0.008 4.008 27 C -0.178 4.178 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.140 0.860 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.020 0.980 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.152 -10.844 -11.848 28.177 hybrid contribution 0.917 1.000 0.224 1.376 sum -22.234 -9.844 -11.624 26.951 Atomic orbital electron populations 1.23524 0.75010 1.05590 1.02451 1.86514 1.24874 1.33166 1.83725 1.24234 0.92949 0.80974 0.71032 1.90675 1.68176 1.37341 1.46908 1.21440 0.85646 0.98919 1.08056 1.20322 0.89579 0.95155 1.04761 1.19604 0.95305 0.97577 0.91985 1.21243 0.93840 1.03485 0.98334 1.21219 0.94759 0.96239 0.97431 1.21511 1.00674 1.08925 0.92933 1.19369 0.92515 0.96477 0.85000 1.86112 1.19871 1.88071 1.29023 1.23326 0.77187 0.96189 1.00036 0.88902 1.23034 0.96452 1.01524 0.95001 1.21848 0.91654 0.84409 0.99188 1.44671 1.26343 1.11646 1.52400 1.19428 1.03635 0.91480 1.22821 0.90353 1.25658 0.99847 1.00708 0.99397 1.69984 1.28170 1.27941 1.33472 0.85007 0.78436 0.78631 0.76794 1.21084 1.19682 1.21622 1.21830 0.88870 0.95700 0.94392 1.20463 0.90365 1.07384 0.99609 0.92193 0.91893 0.85273 0.85156 0.86163 0.90612 0.89258 0.83090 0.83634 0.86044 0.91276 0.88325 0.98009 0.89890 0.93992 0.96056 0.95081 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.37 -5.42 10.57 -51.38 -0.54 -5.97 16 3 C 0.46 7.66 7.96 71.23 0.57 8.22 16 4 O -0.54 -12.27 15.73 21.97 0.35 -11.92 16 5 C -0.10 -1.23 5.79 29.85 0.17 -1.06 16 6 C -0.06 -0.92 4.63 29.85 0.14 -0.78 16 7 C -0.04 -0.84 5.13 -19.88 -0.10 -0.94 16 8 C -0.15 -2.64 9.70 22.28 0.22 -2.42 16 9 C -0.08 -1.62 10.04 22.25 0.22 -1.40 16 10 C -0.22 -5.96 8.77 22.36 0.20 -5.76 16 11 C 0.11 3.27 6.63 22.51 0.15 3.42 16 12 O -0.32 -10.94 9.88 -92.48 -0.91 -11.85 16 13 C 0.09 3.24 2.77 31.78 0.09 3.33 16 14 H 0.09 3.06 6.58 -2.39 -0.02 3.04 16 15 C -0.12 -4.67 6.82 32.06 0.22 -4.45 16 16 C 0.15 7.59 5.91 86.93 0.51 8.10 16 17 N -0.62 -32.97 3.39 -691.55 -2.35 -35.31 16 18 C -0.25 -14.00 10.27 84.04 0.86 -13.14 16 19 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 20 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 21 N -0.95 -55.98 10.08 21.65 0.22 -55.76 16 22 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 C 0.12 5.15 6.51 86.73 0.56 5.72 16 27 C -0.16 -3.88 9.64 22.37 0.22 -3.66 16 28 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 29 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 30 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.29 8.04 -2.39 -0.02 1.27 16 34 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 35 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 37 H 0.12 3.45 5.31 -2.91 -0.02 3.44 16 38 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 39 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 41 H 0.08 4.64 5.85 -2.39 -0.01 4.62 16 42 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.02 0.99 8.06 -2.39 -0.02 0.97 16 44 H 0.03 1.32 7.43 -2.39 -0.02 1.30 16 45 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -70.82 371.89 5.46 -65.36 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.98 Total: 14.17 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 5.69 Total: -6.49 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -2.13 Total: -91.07 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.11 Total: -29.74 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.82 5.46 -65.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233652584.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.129 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds