Wall clock time and date at job start Tue Mar 31 2020 12:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99667 * 2 1 4 4 O 1.20826 * 120.00298 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99518 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46761 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47186 * 180.02562 * 6 5 3 8 8 C 1.38285 * 119.96910 * 270.01918 * 7 6 5 9 9 C 1.38243 * 120.11292 * 180.02562 * 8 7 6 10 10 C 1.38172 * 120.05509 * 359.68446 * 9 8 7 11 11 C 1.38714 * 119.93925 * 0.56969 * 10 9 8 12 12 O 1.35894 * 120.05163 * 179.72417 * 11 10 9 13 13 C 1.42900 * 117.00387 * 5.45242 * 12 11 10 14 14 C 1.53514 * 114.17280 * 156.76238 * 13 12 11 15 15 N 1.47482 * 87.92687 * 87.62735 * 14 13 12 16 16 C 1.46904 * 110.99955 * 138.70589 * 15 14 13 17 17 C 1.50702 * 109.47236 * 169.99683 * 16 15 14 18 18 H 1.07994 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99852 * 180.27491 * 17 16 15 20 20 N 1.31519 * 119.99998 * 179.73012 * 19 17 16 21 21 Si 1.86804 * 120.00084 * 359.72559 * 19 17 16 22 22 H 1.48494 * 109.46827 * 90.00083 * 21 19 17 23 23 H 1.48504 * 109.47132 * 209.99906 * 21 19 17 24 24 H 1.48499 * 109.47281 * 330.00137 * 21 19 17 25 25 C 1.47476 * 87.83655 * 27.01142 * 15 14 13 26 26 C 1.38127 * 119.97571 * 89.99663 * 7 6 5 27 27 H 1.09004 * 109.46818 * 60.00771 * 1 2 3 28 28 H 1.09007 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47732 * 300.00117 * 1 2 3 30 30 H 1.08996 * 109.47320 * 60.00049 * 5 3 2 31 31 H 1.08996 * 109.47205 * 299.99278 * 5 3 2 32 32 H 1.08996 * 109.47589 * 59.99432 * 6 5 3 33 33 H 1.09009 * 109.47032 * 299.99798 * 6 5 3 34 34 H 1.08002 * 119.94647 * 0.02562 * 8 7 6 35 35 H 1.08008 * 119.97256 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.02883 * 180.29616 * 10 9 8 37 37 H 1.09000 * 113.25377 * 23.82050 * 13 12 11 38 38 H 1.09001 * 113.47486 * 332.86460 * 14 13 12 39 39 H 1.08999 * 113.47864 * 202.39290 * 14 13 12 40 40 H 1.09001 * 109.46912 * 49.99811 * 16 15 14 41 41 H 1.08997 * 109.46899 * 289.99919 * 16 15 14 42 42 H 0.96998 * 119.99909 * 180.02562 * 20 19 17 43 43 H 1.09003 * 113.47545 * 87.75540 * 25 15 14 44 44 H 1.09004 * 113.47402 * 218.22206 * 25 15 14 45 45 H 1.07993 * 120.02256 * 0.02644 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7421 -0.0002 7 6 5.5050 2.8211 -0.0002 8 6 6.1948 2.8575 1.1977 9 6 7.5753 2.9304 1.2011 10 6 8.2697 2.9606 0.0069 11 6 7.5797 2.9295 -1.1961 12 8 8.2600 2.9647 -2.3719 13 6 9.6861 2.9125 -2.2982 14 6 10.3633 2.3993 -3.5768 15 7 10.3621 3.7888 -4.0711 16 6 11.6286 4.1098 -4.7426 17 6 11.5029 5.4378 -5.4438 18 1 10.5749 5.9881 -5.3958 19 6 12.5707 5.9473 -6.1518 20 7 12.4593 7.1037 -6.7682 21 14 14.1756 4.9951 -6.2355 22 1 14.1509 4.0856 -7.4091 23 1 15.3087 5.9456 -6.3696 24 1 14.3431 4.1971 -4.9944 25 6 10.3832 4.2302 -2.6641 26 6 6.1941 2.8565 -1.1968 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9564 0.7806 -0.8891 31 1 3.9556 0.7811 0.8908 32 1 3.6099 3.2369 0.8892 33 1 3.6107 3.2357 -0.8907 34 1 5.6542 2.8289 2.1322 35 1 8.1118 2.9592 2.1381 36 1 9.3484 3.0127 0.0101 37 1 10.0530 2.4493 -1.3822 38 1 9.7339 1.7295 -4.1626 39 1 11.3631 1.9993 -3.4081 40 1 11.8596 3.3339 -5.4726 41 1 12.4282 4.1632 -4.0038 42 1 13.2104 7.4620 -7.2666 43 1 11.3884 4.3188 -2.2518 44 1 9.7707 5.1122 -2.4764 45 1 5.6548 2.8281 -2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233657689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:35 Heat of formation + Delta-G solvation = -54.796154 kcal Electronic energy + Delta-G solvation = -25325.688296 eV Core-core repulsion = 21503.247863 eV Total energy + Delta-G solvation = -3822.440433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.88101 -40.54548 -39.18124 -37.19928 -36.74735 -34.12277 -32.80531 -30.82338 -30.13049 -29.39780 -28.06145 -25.93221 -25.51143 -24.95205 -22.63434 -22.19869 -21.20899 -20.81780 -19.26684 -18.19549 -17.64039 -17.05076 -16.90574 -16.79686 -16.10989 -16.04780 -15.49729 -14.95634 -14.83273 -14.35249 -14.25896 -13.94320 -13.88167 -13.45793 -13.24517 -13.17272 -13.00019 -12.75739 -12.46928 -12.42841 -12.22307 -11.76259 -11.74177 -11.60373 -11.38484 -11.19622 -11.08283 -10.90725 -10.82285 -10.40203 -10.19468 -10.17872 -9.82916 -9.37823 -8.96719 -8.59150 -8.18128 -8.01502 -6.06566 -4.04347 1.14959 1.37328 1.83195 2.34708 3.14420 3.24908 3.31773 3.32586 3.62609 4.27243 4.38535 4.52638 4.56251 4.60536 4.63449 4.69699 4.77199 4.78867 4.79888 4.89076 5.09552 5.13093 5.16710 5.19293 5.22992 5.24117 5.38219 5.58635 5.65314 5.68106 5.74802 5.87128 5.94907 6.00601 6.01085 6.16144 6.27034 6.33653 6.40516 6.44650 6.65024 6.71954 7.24653 7.35646 7.52645 7.65558 7.78884 8.61007 9.04951 9.53966 11.06835 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.001974 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.232978 B =14181.356112 C =14628.466321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.460 3.540 4 O -0.507 6.507 5 C -0.109 4.109 6 C -0.067 4.067 7 C -0.050 4.050 8 C -0.160 4.160 9 C -0.077 4.077 10 C -0.212 4.212 11 C 0.142 3.858 12 O -0.275 6.275 13 C 0.046 3.954 14 C -0.004 4.004 15 N -0.445 5.445 16 C 0.125 3.875 17 C -0.507 4.507 18 H 0.081 0.919 19 C 0.067 3.933 20 N -0.899 5.899 21 Si 0.876 3.124 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.269 1.269 25 C -0.006 4.006 26 C -0.149 4.149 27 H 0.063 0.937 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.025 0.975 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.119 -16.280 19.483 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.304 3.696 4 O -0.394 6.394 5 C -0.146 4.146 6 C -0.105 4.105 7 C -0.050 4.050 8 C -0.178 4.178 9 C -0.095 4.095 10 C -0.231 4.231 11 C 0.096 3.904 12 O -0.187 6.187 13 C -0.011 4.011 14 C -0.133 4.133 15 N -0.167 5.167 16 C -0.002 4.002 17 C -0.545 4.545 18 H 0.099 0.901 19 C -0.135 4.135 20 N -0.538 5.538 21 Si 0.703 3.297 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.135 4.135 26 C -0.168 4.168 27 H 0.082 0.918 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.148 0.852 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.019 0.981 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.811 -15.586 18.652 30.134 hybrid contribution 1.731 -0.527 0.400 1.853 sum -16.079 -16.113 19.052 29.684 Atomic orbital electron populations 1.23277 0.76246 1.03746 1.02634 1.86518 1.23559 1.33617 1.84128 1.23905 0.92322 0.81282 0.72136 1.90690 1.67321 1.36310 1.45104 1.21423 0.86943 0.99703 1.06531 1.20392 0.91013 0.94108 1.04966 1.19445 0.94543 0.98479 0.92504 1.20879 0.94184 1.05447 0.97308 1.20901 0.94077 0.97180 0.97353 1.21344 1.00680 1.08788 0.92273 1.19107 0.91850 0.94239 0.85221 1.86198 1.18867 1.86783 1.26867 1.23670 0.78833 0.99471 0.99150 1.24064 0.99048 0.96167 0.94041 1.69049 1.35110 1.02449 1.10091 1.20769 0.86412 0.98417 0.94606 1.20955 1.00843 1.02283 1.30442 0.90123 1.24937 0.98453 0.94915 0.95147 1.69899 1.31736 1.18495 1.33642 0.86856 0.83886 0.80114 0.78830 1.20119 1.21085 1.19431 1.24269 0.99706 0.97613 0.91960 1.20311 0.91088 1.06770 0.98611 0.91785 0.88065 0.91884 0.87134 0.87314 0.89768 0.89654 0.86114 0.85896 0.85186 0.89431 0.89367 0.90511 0.95747 0.98137 0.92628 0.90553 0.89486 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.92 10.57 -39.26 -0.41 -3.33 16 3 C 0.46 4.06 7.96 36.01 0.29 4.35 16 4 O -0.51 -5.90 15.73 -18.75 -0.29 -6.20 16 5 C -0.11 -0.73 5.79 -27.88 -0.16 -0.89 16 6 C -0.07 -0.55 4.63 -27.88 -0.13 -0.68 16 7 C -0.05 -0.48 5.13 -104.65 -0.54 -1.02 16 8 C -0.16 -1.46 9.70 -39.56 -0.38 -1.84 16 9 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 10 C -0.21 -2.44 9.03 -39.43 -0.36 -2.80 16 11 C 0.14 1.90 6.68 -39.22 -0.26 1.64 16 12 O -0.27 -4.37 10.18 -19.41 -0.20 -4.57 16 13 C 0.05 0.68 4.07 -26.20 -0.11 0.57 16 14 C 0.00 -0.06 7.52 -7.54 -0.06 -0.12 16 15 N -0.44 -9.51 6.32 -246.12 -1.55 -11.07 16 16 C 0.13 3.03 3.64 -4.97 -0.02 3.02 16 17 C -0.51 -14.79 9.94 -34.44 -0.34 -15.13 16 18 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 21 Si 0.88 21.40 27.46 -169.99 -4.67 16.73 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.24 6.55 56.52 0.37 -5.87 16 25 C -0.01 -0.11 7.55 -7.55 -0.06 -0.16 16 26 C -0.15 -1.77 9.64 -39.43 -0.38 -2.15 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 33 H 0.08 0.76 8.04 -51.92 -0.42 0.34 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.13 1.36 5.88 -52.49 -0.31 1.05 16 37 H 0.09 1.03 5.89 -51.93 -0.31 0.72 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 40 H 0.02 0.59 7.50 -51.93 -0.39 0.20 16 41 H 0.00 0.02 6.37 -51.93 -0.33 -0.31 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.08 1.28 7.42 -51.93 -0.39 0.90 16 44 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 376.91 15.07 5.68 5.68 Total: -1.00 -34.69 376.91 -9.39 -44.08 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.78 Total: -0.98 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.93 Total: -13.23 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.78 Total: -38.18 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.91 Total: -14.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.69 -9.39 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233657689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.716 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds