Wall clock time and date at job start Tue Mar 31 2020 12:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 116.99667 * 2 1 4 4 O 1.20826 * 120.00298 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99518 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46761 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.47186 * 180.02562 * 6 5 3 8 8 C 1.38285 * 119.96910 * 270.01918 * 7 6 5 9 9 C 1.38243 * 120.11292 * 180.02562 * 8 7 6 10 10 C 1.38172 * 120.05509 * 359.68446 * 9 8 7 11 11 C 1.38714 * 119.93925 * 0.56969 * 10 9 8 12 12 O 1.35894 * 120.05163 * 179.72417 * 11 10 9 13 13 C 1.42900 * 117.00387 * 5.45242 * 12 11 10 14 14 C 1.53514 * 114.17280 * 156.76238 * 13 12 11 15 15 N 1.47482 * 87.92687 * 87.62735 * 14 13 12 16 16 C 1.46904 * 110.99955 * 138.70589 * 15 14 13 17 17 C 1.50702 * 109.47236 * 169.99683 * 16 15 14 18 18 H 1.07994 * 119.99901 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99852 * 180.27491 * 17 16 15 20 20 N 1.31519 * 119.99998 * 179.73012 * 19 17 16 21 21 Si 1.86804 * 120.00084 * 359.72559 * 19 17 16 22 22 H 1.48494 * 109.46827 * 90.00083 * 21 19 17 23 23 H 1.48504 * 109.47132 * 209.99906 * 21 19 17 24 24 H 1.48499 * 109.47281 * 330.00137 * 21 19 17 25 25 C 1.47476 * 87.83655 * 27.01142 * 15 14 13 26 26 C 1.38127 * 119.97571 * 89.99663 * 7 6 5 27 27 H 1.09004 * 109.46818 * 60.00771 * 1 2 3 28 28 H 1.09007 * 109.47340 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47732 * 300.00117 * 1 2 3 30 30 H 1.08996 * 109.47320 * 60.00049 * 5 3 2 31 31 H 1.08996 * 109.47205 * 299.99278 * 5 3 2 32 32 H 1.08996 * 109.47589 * 59.99432 * 6 5 3 33 33 H 1.09009 * 109.47032 * 299.99798 * 6 5 3 34 34 H 1.08002 * 119.94647 * 0.02562 * 8 7 6 35 35 H 1.08008 * 119.97256 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.02883 * 180.29616 * 10 9 8 37 37 H 1.09000 * 113.25377 * 23.82050 * 13 12 11 38 38 H 1.09001 * 113.47486 * 332.86460 * 14 13 12 39 39 H 1.08999 * 113.47864 * 202.39290 * 14 13 12 40 40 H 1.09001 * 109.46912 * 49.99811 * 16 15 14 41 41 H 1.08997 * 109.46899 * 289.99919 * 16 15 14 42 42 H 0.96998 * 119.99909 * 180.02562 * 20 19 17 43 43 H 1.09003 * 113.47545 * 87.75540 * 25 15 14 44 44 H 1.09004 * 113.47402 * 218.22206 * 25 15 14 45 45 H 1.07993 * 120.02256 * 0.02644 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7421 -0.0002 7 6 5.5050 2.8211 -0.0002 8 6 6.1948 2.8575 1.1977 9 6 7.5753 2.9304 1.2011 10 6 8.2697 2.9606 0.0069 11 6 7.5797 2.9295 -1.1961 12 8 8.2600 2.9647 -2.3719 13 6 9.6861 2.9125 -2.2982 14 6 10.3633 2.3993 -3.5768 15 7 10.3621 3.7888 -4.0711 16 6 11.6286 4.1098 -4.7426 17 6 11.5029 5.4378 -5.4438 18 1 10.5749 5.9881 -5.3958 19 6 12.5707 5.9473 -6.1518 20 7 12.4593 7.1037 -6.7682 21 14 14.1756 4.9951 -6.2355 22 1 14.1509 4.0856 -7.4091 23 1 15.3087 5.9456 -6.3696 24 1 14.3431 4.1971 -4.9944 25 6 10.3832 4.2302 -2.6641 26 6 6.1941 2.8565 -1.1968 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9564 0.7806 -0.8891 31 1 3.9556 0.7811 0.8908 32 1 3.6099 3.2369 0.8892 33 1 3.6107 3.2357 -0.8907 34 1 5.6542 2.8289 2.1322 35 1 8.1118 2.9592 2.1381 36 1 9.3484 3.0127 0.0101 37 1 10.0530 2.4493 -1.3822 38 1 9.7339 1.7295 -4.1626 39 1 11.3631 1.9993 -3.4081 40 1 11.8596 3.3339 -5.4726 41 1 12.4282 4.1632 -4.0038 42 1 13.2104 7.4620 -7.2666 43 1 11.3884 4.3188 -2.2518 44 1 9.7707 5.1122 -2.4764 45 1 5.6548 2.8281 -2.1320 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233657689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:34 Heat of formation + Delta-G solvation = -78.533944 kcal Electronic energy + Delta-G solvation = -25326.717644 eV Core-core repulsion = 21503.247863 eV Total energy + Delta-G solvation = -3823.469781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75468 -41.49173 -40.24218 -38.16992 -37.54926 -35.00693 -34.79377 -32.02786 -31.23686 -30.51099 -28.60804 -27.52009 -26.88889 -25.77301 -23.56742 -23.46402 -22.51856 -21.63992 -20.35325 -19.06677 -18.97632 -18.46089 -17.69699 -17.52957 -17.19836 -16.98999 -16.75387 -16.39967 -15.99384 -15.57285 -15.26710 -14.93674 -14.82658 -14.54044 -14.51211 -14.22978 -14.07307 -13.78794 -13.70140 -13.51896 -13.07676 -13.02081 -12.83587 -12.54655 -12.48124 -12.20629 -12.04411 -11.92994 -11.82033 -11.78466 -11.60379 -11.56073 -11.44196 -11.32435 -10.80957 -9.76667 -9.58914 -9.08363 -8.31200 -6.36604 0.35407 0.53943 1.16250 1.33204 1.36268 1.46569 1.78182 2.11331 2.32506 2.81164 3.01006 3.26203 3.32904 3.63655 3.77679 3.91239 3.96526 4.01687 4.17379 4.24175 4.30745 4.32940 4.34677 4.38171 4.45164 4.47880 4.54303 4.58778 4.63831 4.65981 4.72948 4.73167 4.81767 4.88560 4.97078 5.07484 5.17731 5.39875 5.43528 5.45101 5.54902 5.67172 5.69827 5.90557 5.96398 6.52223 6.58143 6.69633 6.70674 7.26867 8.86396 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.001974 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.232978 B =14181.356112 C =14628.466321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.102 4.102 6 C -0.063 4.063 7 C -0.045 4.045 8 C -0.154 4.154 9 C -0.076 4.076 10 C -0.218 4.218 11 C 0.111 3.889 12 O -0.305 6.305 13 C 0.068 3.932 14 C -0.001 4.001 15 N -0.491 5.491 16 C 0.137 3.863 17 C -0.524 4.524 18 H 0.023 0.977 19 C 0.002 3.998 20 N -0.951 5.951 21 Si 0.958 3.042 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.242 1.242 25 C -0.012 4.012 26 C -0.166 4.166 27 H 0.058 0.942 28 H 0.130 0.870 29 H 0.063 0.937 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.030 0.970 41 H 0.014 0.986 42 H 0.268 0.732 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -19.231 22.219 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.307 3.693 4 O -0.432 6.432 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.045 4.045 8 C -0.172 4.172 9 C -0.094 4.094 10 C -0.237 4.237 11 C 0.066 3.934 12 O -0.218 6.218 13 C 0.012 3.988 14 C -0.130 4.130 15 N -0.214 5.214 16 C 0.009 3.991 17 C -0.562 4.562 18 H 0.041 0.959 19 C -0.195 4.195 20 N -0.592 5.592 21 Si 0.780 3.220 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.165 1.165 25 C -0.141 4.141 26 C -0.185 4.185 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.137 0.863 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.158 0.842 37 H 0.146 0.854 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.048 0.952 41 H 0.032 0.968 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.696 -18.568 21.412 32.894 hybrid contribution 1.150 0.447 -0.398 1.296 sum -15.546 -18.121 21.015 31.807 Atomic orbital electron populations 1.23525 0.75020 1.05615 1.02428 1.86512 1.24864 1.33125 1.83725 1.24268 0.93006 0.80980 0.71032 1.90678 1.68199 1.37386 1.46905 1.21433 0.85586 0.98857 1.08049 1.20333 0.89979 0.95184 1.04550 1.19572 0.95129 0.97725 0.92111 1.21262 0.94329 1.03548 0.98012 1.21273 0.94448 0.95868 0.97795 1.21523 1.01306 1.08700 0.92154 1.19381 0.92329 0.96502 0.85201 1.86150 1.19357 1.87527 1.28793 1.23504 0.78581 0.96742 1.00005 1.24162 1.00811 0.93470 0.94513 1.68931 1.33768 1.06311 1.12348 1.20535 0.88383 0.95425 0.94762 1.21234 0.98905 1.04461 1.31590 0.95864 1.26030 1.03217 0.95963 0.94291 1.70082 1.33424 1.20789 1.34866 0.85563 0.77566 0.78650 0.80208 1.19059 1.20613 1.16486 1.24342 1.00702 0.98605 0.90482 1.20445 0.90977 1.07714 0.99339 0.92302 0.85207 0.91853 0.86316 0.84909 0.89237 0.91103 0.83247 0.83000 0.84209 0.85423 0.89215 0.87760 0.95235 0.96795 0.92343 0.89018 0.91952 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.37 -5.44 10.57 -51.44 -0.54 -5.98 16 3 C 0.46 7.74 7.96 71.24 0.57 8.30 16 4 O -0.54 -12.55 15.73 21.96 0.35 -12.20 16 5 C -0.10 -1.20 5.79 29.85 0.17 -1.03 16 6 C -0.06 -0.96 4.63 29.85 0.14 -0.82 16 7 C -0.05 -0.81 5.13 -19.88 -0.10 -0.91 16 8 C -0.15 -2.31 9.70 22.28 0.22 -2.10 16 9 C -0.08 -1.22 10.04 22.26 0.22 -0.99 16 10 C -0.22 -4.55 9.03 22.37 0.20 -4.35 16 11 C 0.11 2.91 6.68 22.51 0.15 3.06 16 12 O -0.30 -9.73 10.18 -92.35 -0.94 -10.67 16 13 C 0.07 1.93 4.07 30.94 0.13 2.05 16 14 C 0.00 -0.03 7.52 83.57 0.63 0.60 16 15 N -0.49 -21.17 6.32 -932.98 -5.89 -27.06 16 16 C 0.14 6.58 3.64 85.56 0.31 6.89 16 17 C -0.52 -31.73 9.94 25.60 0.25 -31.48 16 18 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 19 C 0.00 0.11 5.47 84.65 0.46 0.57 16 20 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 21 Si 0.96 43.82 27.46 68.60 1.88 45.71 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.24 -9.90 6.55 99.48 0.65 -9.25 16 25 C -0.01 -0.43 7.55 83.57 0.63 0.20 16 26 C -0.17 -3.94 9.64 22.37 0.22 -3.72 16 27 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 28 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.28 8.04 -2.39 -0.02 1.26 16 33 H 0.07 1.29 8.04 -2.38 -0.02 1.27 16 34 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.14 2.52 5.88 -2.91 -0.02 2.50 16 37 H 0.13 2.56 5.89 -2.39 -0.01 2.55 16 38 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.10 2.68 7.91 -2.39 -0.02 2.66 16 40 H 0.03 1.38 7.50 -2.39 -0.02 1.36 16 41 H 0.01 0.64 6.37 -2.39 -0.02 0.63 16 42 H 0.27 15.91 8.31 -92.71 -0.77 15.13 16 43 H 0.09 2.94 7.42 -2.39 -0.02 2.93 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.12 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -80.05 376.91 1.47 -78.58 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.93 Total: 14.73 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 5.39 Total: -22.24 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -5.59 Total: -87.92 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.14 Total: -28.85 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Total: -80.05 1.47 -78.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233657689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.047 kcal (2) G-P(sol) polarization free energy of solvation -80.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds