Wall clock time and date at job start Tue Mar 31 2020 12:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99890 * 2 1 4 4 O 1.20824 * 119.99854 * 359.97438 * 3 2 1 5 5 C 1.50692 * 119.99909 * 179.97438 * 3 2 1 6 6 C 1.52999 * 109.47100 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47146 * 180.02562 * 6 5 3 8 8 C 1.38169 * 120.02751 * 265.32030 * 7 6 5 9 9 C 1.38245 * 120.05705 * 180.30023 * 8 7 6 10 10 C 1.38284 * 120.10970 * 359.67565 * 9 8 7 11 11 C 1.38123 * 120.05655 * 0.02562 * 10 9 8 12 12 C 1.38704 * 120.03098 * 85.00251 * 7 6 5 13 13 O 1.35905 * 120.05408 * 359.97438 * 12 7 6 14 14 C 1.42904 * 116.99664 * 173.67436 * 13 12 7 15 15 C 1.53515 * 114.16817 * 201.77448 * 14 13 12 16 16 N 1.47473 * 87.93290 * 220.14001 * 15 14 13 17 17 C 1.46902 * 111.00092 * 138.70427 * 16 15 14 18 18 C 1.50703 * 109.47029 * 169.99934 * 17 16 15 19 19 H 1.07991 * 120.00373 * 0.02562 * 18 17 16 20 20 C 1.37883 * 119.99651 * 179.97438 * 18 17 16 21 21 N 1.31509 * 120.00026 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99834 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47149 * 180.02562 * 22 20 18 24 24 H 1.48506 * 109.46955 * 300.00300 * 22 20 18 25 25 H 1.48495 * 109.47051 * 60.00194 * 22 20 18 26 26 C 1.47480 * 87.83674 * 27.00930 * 16 15 14 27 27 H 1.09004 * 109.47327 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47281 * 300.00040 * 1 2 3 29 29 H 1.09003 * 109.47081 * 59.99915 * 1 2 3 30 30 H 1.09001 * 109.47237 * 60.00536 * 5 3 2 31 31 H 1.08997 * 109.47412 * 299.99982 * 5 3 2 32 32 H 1.09003 * 109.47415 * 60.00290 * 6 5 3 33 33 H 1.09005 * 109.47155 * 300.00020 * 6 5 3 34 34 H 1.08005 * 119.97323 * 359.97438 * 8 7 6 35 35 H 1.08003 * 119.94299 * 179.70343 * 9 8 7 36 36 H 1.08005 * 119.97397 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.02944 * 180.02562 * 11 10 9 38 38 H 1.08998 * 113.26281 * 334.72480 * 14 13 12 39 39 H 1.08999 * 113.47712 * 105.37156 * 15 14 13 40 40 H 1.09004 * 113.52902 * 334.91999 * 15 14 13 41 41 H 1.08999 * 109.47026 * 50.00079 * 17 16 15 42 42 H 1.09004 * 109.46911 * 289.99666 * 17 16 15 43 43 H 0.97000 * 119.99906 * 179.97438 * 21 20 18 44 44 H 1.09007 * 113.47438 * 87.75649 * 26 16 15 45 45 H 1.08997 * 113.47675 * 218.21975 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0000 2.7421 0.0011 7 6 5.5050 2.8210 0.0011 8 6 6.1904 2.9542 1.1933 9 6 7.5706 3.0329 1.1935 10 6 8.2691 2.9717 0.0016 11 6 7.5889 2.8324 -1.1925 12 6 6.2036 2.7533 -1.1953 13 8 5.5321 2.6153 -2.3688 14 6 6.3025 2.6920 -3.5699 15 6 5.4861 3.0554 -4.8181 16 7 6.2872 2.0675 -5.5644 17 6 5.4432 1.2902 -6.4818 18 6 6.3172 0.4710 -7.3962 19 1 7.3920 0.5223 -7.3048 20 6 5.7444 -0.3447 -8.3489 21 7 4.4355 -0.4075 -8.4599 22 14 6.8277 -1.3607 -9.4819 23 1 5.9746 -2.1463 -10.4093 24 1 7.7087 -0.4577 -10.2653 25 1 7.6611 -2.2852 -8.6721 26 6 6.4849 1.3494 -4.2915 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 3.6100 3.2360 0.8911 33 1 3.6106 3.2365 -0.8889 34 1 5.6472 3.0022 2.1256 35 1 8.1043 3.1418 2.1261 36 1 9.3474 3.0330 0.0043 37 1 8.1349 2.7843 -2.1231 38 1 7.2222 3.2657 -3.4556 39 1 5.6391 4.0812 -5.1536 40 1 4.4316 2.7903 -4.7408 41 1 4.8314 1.9691 -7.0759 42 1 4.7966 0.6271 -5.9069 43 1 4.0326 -0.9812 -9.1304 44 1 5.6972 0.6283 -4.0728 45 1 7.4845 0.9291 -4.1807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234343623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:39 Heat of formation + Delta-G solvation = -83.450649 kcal Electronic energy + Delta-G solvation = -26338.249609 eV Core-core repulsion = 22514.566625 eV Total energy + Delta-G solvation = -3823.682985 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81781 -41.47281 -40.27817 -37.88700 -37.64393 -35.18743 -35.00414 -31.46922 -31.31888 -30.42410 -28.59400 -27.37280 -26.89716 -25.70436 -24.43176 -22.72205 -22.52387 -21.55705 -20.76580 -19.28771 -18.73167 -18.49055 -17.74449 -17.61238 -17.28263 -16.71932 -16.55432 -16.37644 -16.22064 -15.55127 -15.09622 -15.02550 -14.92073 -14.63099 -14.20270 -13.98423 -13.84974 -13.79797 -13.68271 -13.52763 -13.10504 -13.03343 -12.83708 -12.67003 -12.48592 -12.45529 -12.23641 -11.99628 -11.82711 -11.76548 -11.71081 -11.56543 -11.35226 -11.22488 -10.64270 -9.83957 -9.75698 -9.05009 -8.25432 -6.36693 0.39563 0.53545 1.12101 1.39508 1.43171 1.51347 1.76904 2.13479 2.38864 2.84223 3.06854 3.24089 3.33814 3.64525 3.76790 3.86820 3.94312 4.07742 4.11766 4.21737 4.25202 4.29221 4.32811 4.41140 4.44857 4.53092 4.56334 4.58434 4.65431 4.67972 4.74749 4.80162 4.85001 4.89875 5.01520 5.06248 5.20832 5.36463 5.48770 5.50527 5.58280 5.65841 5.69190 5.94581 5.99865 6.32459 6.49674 6.66835 6.76815 7.33090 8.85890 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.003374 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.368327 B = 8295.768035 C =10500.852006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.462 3.538 4 O -0.539 6.539 5 C -0.103 4.103 6 C -0.051 4.051 7 C -0.131 4.131 8 C -0.076 4.076 9 C -0.156 4.156 10 C -0.083 4.083 11 C -0.217 4.217 12 C 0.113 3.887 13 O -0.313 6.313 14 C 0.074 3.926 15 C -0.002 4.002 16 N -0.473 5.473 17 C 0.177 3.823 18 C -0.529 4.529 19 H 0.063 0.937 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.973 3.027 23 H -0.281 1.281 24 H -0.267 1.267 25 H -0.266 1.266 26 C -0.007 4.007 27 H 0.129 0.871 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.134 0.866 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.003 0.997 42 H -0.021 1.021 43 H 0.266 0.734 44 H 0.056 0.944 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 4.432 24.260 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.307 3.693 4 O -0.429 6.429 5 C -0.140 4.140 6 C -0.088 4.088 7 C -0.131 4.131 8 C -0.094 4.094 9 C -0.174 4.174 10 C -0.101 4.101 11 C -0.236 4.236 12 C 0.068 3.932 13 O -0.226 6.226 14 C 0.017 3.983 15 C -0.131 4.131 16 N -0.197 5.197 17 C 0.050 3.950 18 C -0.568 4.568 19 H 0.081 0.919 20 C -0.197 4.197 21 N -0.575 5.575 22 Si 0.797 3.203 23 H -0.206 1.206 24 H -0.192 1.192 25 H -0.191 1.191 26 C -0.136 4.136 27 H 0.147 0.853 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.152 0.848 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.021 0.979 42 H -0.003 1.003 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.945 4.793 23.678 24.237 hybrid contribution -0.902 -0.833 -0.933 1.542 sum 1.042 3.960 22.745 23.111 Atomic orbital electron populations 1.23530 0.74981 1.05615 1.02453 1.86518 1.24979 1.33232 1.83722 1.24256 0.92993 0.81013 0.70999 1.90646 1.68111 1.37246 1.46908 1.21432 0.85708 0.99794 1.07045 1.20085 0.90829 0.94236 1.03687 1.19234 0.95115 1.07668 0.91109 1.21200 0.94679 0.96800 0.96727 1.21397 0.94111 1.02920 0.98976 1.21289 1.01061 0.96297 0.91477 1.21482 0.92777 1.08550 1.00763 1.19210 0.91404 0.96916 0.85693 1.86153 1.37251 1.86530 1.12635 1.24131 0.95949 0.97256 0.80934 1.24072 0.97233 0.99998 0.91754 1.68898 1.33825 1.10106 1.06874 1.19929 0.91728 0.91630 0.91734 1.21377 0.93732 1.24652 1.16990 0.91925 1.25967 0.96485 0.98126 0.99079 1.70075 1.11257 1.40261 1.35868 0.85378 0.78306 0.78416 0.78193 1.20649 1.19181 1.19091 1.24282 1.02640 0.96481 0.90212 0.85262 0.91265 0.92712 0.88132 0.84839 0.89187 0.92324 0.82899 0.83153 0.83656 0.84933 0.85091 0.87846 0.92313 0.97867 1.00297 0.92519 0.92580 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.67 16 2 O -0.37 -8.55 10.57 -51.43 -0.54 -9.09 16 3 C 0.46 11.58 7.96 71.23 0.57 12.15 16 4 O -0.54 -16.34 15.73 21.97 0.35 -15.99 16 5 C -0.10 -2.12 5.79 29.85 0.17 -1.94 16 6 C -0.05 -1.12 4.36 29.85 0.13 -0.99 16 7 C -0.13 -2.80 5.15 -19.77 -0.10 -2.90 16 8 C -0.08 -1.21 9.68 22.25 0.22 -1.00 16 9 C -0.16 -2.27 10.04 22.28 0.22 -2.05 16 10 C -0.08 -1.41 10.04 22.25 0.22 -1.19 16 11 C -0.22 -4.76 9.02 22.37 0.20 -4.56 16 12 C 0.11 2.85 6.65 22.50 0.15 3.00 16 13 O -0.31 -9.43 9.33 -92.48 -0.86 -10.29 16 14 C 0.07 2.28 4.00 30.94 0.12 2.40 16 15 C 0.00 -0.06 7.52 83.57 0.63 0.57 16 16 N -0.47 -20.84 6.32 -933.01 -5.89 -26.73 16 17 C 0.18 9.66 4.57 85.56 0.39 10.06 16 18 C -0.53 -30.78 9.39 25.60 0.24 -30.54 16 19 H 0.06 3.57 7.81 -2.92 -0.02 3.54 16 20 C 0.00 0.10 5.46 84.66 0.46 0.56 16 21 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 22 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C -0.01 -0.26 7.56 83.57 0.63 0.37 16 27 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 29 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 30 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 1.72 8.01 -2.39 -0.02 1.70 16 33 H 0.06 1.61 7.65 -2.38 -0.02 1.59 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.13 2.81 5.93 -2.91 -0.02 2.79 16 38 H 0.13 3.42 6.00 -2.39 -0.01 3.41 16 39 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 40 H 0.06 2.30 7.91 -2.38 -0.02 2.28 16 41 H 0.00 0.19 8.08 -2.39 -0.02 0.17 16 42 H -0.02 -1.22 7.30 -2.39 -0.02 -1.23 16 43 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.06 2.31 7.42 -2.38 -0.02 2.29 16 45 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -72.41 379.40 1.79 -70.61 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.98 Total: 15.95 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 5.46 Total: -14.37 kcal Atomic # 7 Polarization: -77.83 SS G_CDS: -5.61 Total: -83.44 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -1.06 Total: -35.38 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.41 1.79 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234343623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.836 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds