Wall clock time and date at job start Tue Mar 31 2020 12:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 117.00360 * 2 1 4 4 O 1.20825 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00159 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46894 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.46894 * 179.97438 * 6 5 3 8 8 C 1.38170 * 120.02324 * 264.72401 * 7 6 5 9 9 C 1.38245 * 120.04973 * 179.77148 * 8 7 6 10 10 C 1.38291 * 120.11392 * 0.50540 * 9 8 7 11 11 C 1.38123 * 120.05600 * 359.74862 * 10 9 8 12 12 C 1.38703 * 120.03161 * 85.00272 * 7 6 5 13 13 O 1.35901 * 120.05460 * 359.97438 * 12 7 6 14 14 C 1.42901 * 117.00141 * 185.34178 * 13 12 7 15 15 H 1.08998 * 110.64173 * 37.89904 * 14 13 12 16 16 C 1.55159 * 110.71947 * 161.23879 * 14 13 12 17 17 C 1.54910 * 101.58039 * 153.86552 * 16 14 13 18 18 N 1.47422 * 104.83112 * 322.98424 * 17 16 14 19 19 C 1.36937 * 125.64987 * 204.16194 * 18 17 16 20 20 H 1.07996 * 120.00130 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99922 * 359.96395 * 19 18 17 22 22 N 1.31618 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47158 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46628 * 120.00259 * 23 21 19 26 26 H 1.48501 * 109.47115 * 240.00236 * 23 21 19 27 27 C 1.47026 * 108.70364 * 24.13420 * 18 17 16 28 28 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46715 * 300.00022 * 1 2 3 30 30 H 1.09000 * 109.46959 * 59.99796 * 1 2 3 31 31 H 1.08992 * 109.46907 * 299.99664 * 5 3 2 32 32 H 1.08996 * 109.47131 * 60.00119 * 5 3 2 33 33 H 1.08997 * 109.47072 * 300.00131 * 6 5 3 34 34 H 1.09000 * 109.46831 * 59.99731 * 6 5 3 35 35 H 1.08000 * 119.97550 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.94323 * 180.25315 * 9 8 7 37 37 H 1.08004 * 119.96986 * 179.72178 * 10 9 8 38 38 H 1.07992 * 120.03151 * 180.02562 * 11 10 9 39 39 H 1.09010 * 111.00290 * 271.93436 * 16 14 13 40 40 H 1.08996 * 111.00756 * 35.78794 * 16 14 13 41 41 H 1.09006 * 110.36528 * 204.14744 * 17 16 14 42 42 H 1.09004 * 110.46230 * 81.87568 * 17 16 14 43 43 H 0.97002 * 120.00295 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.87736 * 239.52385 * 27 18 17 45 45 H 1.08998 * 110.01155 * 118.42377 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5051 2.8209 -0.0011 8 6 6.1897 2.9674 1.1902 9 6 7.5705 3.0350 1.1913 10 6 8.2695 2.9668 0.0000 11 6 7.5895 2.8256 -1.1939 12 6 6.2039 2.7523 -1.1972 13 8 5.5325 2.6134 -2.3707 14 6 6.3185 2.4318 -3.5502 15 1 7.1837 1.8024 -3.3423 16 6 5.4601 1.8310 -4.6947 17 6 6.2129 2.3412 -5.9487 18 7 6.6649 3.6982 -5.5914 19 6 6.9489 4.7037 -6.4766 20 1 7.2743 5.6672 -6.1130 21 6 6.8187 4.4845 -7.8411 22 7 6.4229 3.3101 -8.2841 23 14 7.2054 5.8564 -9.0485 24 1 7.6274 7.0686 -8.3018 25 1 8.3020 5.4256 -9.9524 26 1 5.9948 6.1653 -9.8511 27 6 6.7597 3.7933 -4.1273 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7806 0.8891 32 1 3.9557 0.7809 -0.8908 33 1 3.6101 3.2360 -0.8910 34 1 3.6107 3.2364 0.8889 35 1 5.6459 3.0249 2.1215 36 1 8.1041 3.1454 2.1238 37 1 9.3480 3.0244 0.0032 38 1 8.1357 2.7720 -2.1240 39 1 5.4621 0.7417 -4.6541 40 1 4.4422 2.2196 -4.6649 41 1 5.5404 2.3788 -6.8058 42 1 7.0681 1.7014 -6.1663 43 1 6.3322 3.1567 -9.2377 44 1 6.1003 4.5813 -3.7637 45 1 7.7877 4.0050 -3.8331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234344293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:38 Heat of formation + Delta-G solvation = -75.381697 kcal Electronic energy + Delta-G solvation = -26721.403643 eV Core-core repulsion = 22898.070554 eV Total energy + Delta-G solvation = -3823.333089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.66791 -40.17065 -38.00454 -36.72477 -36.05969 -34.20715 -32.32544 -30.43195 -29.90575 -29.08667 -27.84291 -27.36511 -24.81761 -24.61765 -22.56122 -21.59096 -20.65149 -20.16358 -20.04320 -18.03137 -17.60899 -17.04682 -16.80047 -16.68115 -15.87141 -15.57173 -15.19820 -14.74964 -14.44733 -14.22409 -14.00043 -13.73897 -13.63144 -13.01000 -12.96995 -12.77393 -12.65563 -12.46834 -12.18986 -11.89479 -11.76364 -11.63631 -11.53332 -11.06353 -11.03407 -10.95346 -10.89956 -10.79025 -10.59350 -10.44499 -10.24874 -10.05419 -9.85189 -9.64152 -8.84184 -8.71067 -8.00655 -6.91242 -5.71131 -3.13295 1.30762 1.50347 2.09624 2.59434 3.37625 3.42091 3.44941 3.47760 3.78200 4.45332 4.54242 4.77444 4.83161 4.89865 4.96278 4.98270 5.03421 5.13090 5.16483 5.28193 5.30381 5.34110 5.38765 5.45275 5.50151 5.58434 5.59408 5.74790 5.82307 5.93976 6.14554 6.21823 6.26635 6.35186 6.42799 6.45012 6.46142 6.53274 6.59561 6.62306 6.91822 7.39813 7.57018 7.61454 7.68194 7.78882 8.28431 9.15648 9.75946 10.38857 11.33327 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003308 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.780957 B = 8461.568580 C =10152.402471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.507 6.507 5 C -0.106 4.106 6 C -0.057 4.057 7 C -0.127 4.127 8 C -0.079 4.079 9 C -0.166 4.166 10 C -0.080 4.080 11 C -0.205 4.205 12 C 0.147 3.853 13 O -0.301 6.301 14 C 0.070 3.930 15 H 0.077 0.923 16 C -0.134 4.134 17 C 0.152 3.848 18 N -0.601 5.601 19 C -0.223 4.223 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.916 3.084 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.118 3.882 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.035 0.965 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 -7.709 20.075 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.305 3.695 4 O -0.394 6.394 5 C -0.144 4.144 6 C -0.094 4.094 7 C -0.128 4.128 8 C -0.097 4.097 9 C -0.184 4.184 10 C -0.098 4.098 11 C -0.224 4.224 12 C 0.100 3.900 13 O -0.214 6.214 14 C 0.014 3.986 15 H 0.094 0.906 16 C -0.173 4.173 17 C 0.028 3.972 18 N -0.328 5.328 19 C -0.351 4.351 20 H 0.097 0.903 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.747 3.253 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.008 4.008 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.151 0.849 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.627 -7.364 19.795 21.622 hybrid contribution 0.402 0.733 -0.683 1.079 sum -4.225 -6.631 19.112 20.666 Atomic orbital electron populations 1.23251 0.76492 1.03576 1.02568 1.86517 1.23380 1.33769 1.84241 1.23936 0.92349 0.81199 0.72004 1.90676 1.67310 1.36321 1.45127 1.21405 0.86756 1.00089 1.06109 1.20166 0.90760 0.93904 1.04557 1.19061 0.95143 1.07807 0.90757 1.20830 0.94150 0.98231 0.96511 1.20960 0.94129 1.05325 0.97969 1.20954 0.99734 0.97195 0.91932 1.21447 0.93393 1.07754 0.99817 1.18934 0.90552 0.94314 0.86161 1.86156 1.35987 1.85936 1.13310 1.23678 0.94437 0.98036 0.82481 0.90562 1.23187 1.00059 0.99196 0.94850 1.21997 0.96851 0.84175 0.94210 1.44382 1.79062 1.10597 0.98767 1.19130 1.37930 0.91467 0.86576 0.90326 1.24799 1.01763 0.97279 0.96736 1.69764 1.53300 1.21120 1.12938 0.85965 0.77541 0.80767 0.81037 1.20476 1.21691 1.21630 1.21733 0.97826 0.94245 0.87029 0.88197 0.92026 0.91790 0.87798 0.87134 0.89420 0.90458 0.85720 0.86237 0.86042 0.84929 0.91493 0.90802 0.86874 0.96532 0.93646 0.94723 0.95669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.96 10.57 -39.27 -0.41 -4.37 16 3 C 0.46 5.60 7.96 36.01 0.29 5.89 16 4 O -0.51 -7.55 15.73 -18.75 -0.29 -7.84 16 5 C -0.11 -1.11 5.79 -27.88 -0.16 -1.27 16 6 C -0.06 -0.68 4.36 -27.88 -0.12 -0.80 16 7 C -0.13 -1.60 5.15 -104.48 -0.54 -2.14 16 8 C -0.08 -0.85 9.68 -39.60 -0.38 -1.23 16 9 C -0.17 -1.74 10.04 -39.56 -0.40 -2.14 16 10 C -0.08 -0.93 10.04 -39.60 -0.40 -1.33 16 11 C -0.21 -2.85 8.78 -39.43 -0.35 -3.20 16 12 C 0.15 2.16 6.60 -39.22 -0.26 1.90 16 13 O -0.30 -5.04 9.01 -19.43 -0.18 -5.21 16 14 C 0.07 1.25 2.77 -24.90 -0.07 1.19 16 15 H 0.08 1.26 6.57 -51.93 -0.34 0.92 16 16 C -0.13 -2.56 6.81 -24.58 -0.17 -2.72 16 17 C 0.15 3.65 5.89 -2.53 -0.01 3.63 16 18 N -0.60 -15.46 3.39 -170.07 -0.58 -16.04 16 19 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 23 Si 0.92 22.04 29.55 -169.99 -5.02 17.01 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.12 2.52 6.53 -3.06 -0.02 2.50 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 30 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.26 7.65 -51.93 -0.40 0.87 16 34 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.13 1.90 5.33 -52.49 -0.28 1.62 16 39 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.11 3.04 5.87 -51.93 -0.31 2.74 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 45 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -31.99 370.72 -8.85 -40.84 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.74 Total: 1.22 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -1.77 Total: -5.14 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: -0.02 Total: -42.09 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.88 Total: -17.43 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.99 -8.85 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234344293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.545 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds