Wall clock time and date at job start Tue Mar 31 2020 12:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 117.00360 * 2 1 4 4 O 1.20825 * 119.99577 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00159 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46894 * 179.97438 * 5 3 2 7 7 C 1.50699 * 109.46894 * 179.97438 * 6 5 3 8 8 C 1.38170 * 120.02324 * 264.72401 * 7 6 5 9 9 C 1.38245 * 120.04973 * 179.77148 * 8 7 6 10 10 C 1.38291 * 120.11392 * 0.50540 * 9 8 7 11 11 C 1.38123 * 120.05600 * 359.74862 * 10 9 8 12 12 C 1.38703 * 120.03161 * 85.00272 * 7 6 5 13 13 O 1.35901 * 120.05460 * 359.97438 * 12 7 6 14 14 C 1.42901 * 117.00141 * 185.34178 * 13 12 7 15 15 H 1.08998 * 110.64173 * 37.89904 * 14 13 12 16 16 C 1.55159 * 110.71947 * 161.23879 * 14 13 12 17 17 C 1.54910 * 101.58039 * 153.86552 * 16 14 13 18 18 N 1.47422 * 104.83112 * 322.98424 * 17 16 14 19 19 C 1.36937 * 125.64987 * 204.16194 * 18 17 16 20 20 H 1.07996 * 120.00130 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99922 * 359.96395 * 19 18 17 22 22 N 1.31618 * 119.99868 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47158 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46628 * 120.00259 * 23 21 19 26 26 H 1.48501 * 109.47115 * 240.00236 * 23 21 19 27 27 C 1.47026 * 108.70364 * 24.13420 * 18 17 16 28 28 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46715 * 300.00022 * 1 2 3 30 30 H 1.09000 * 109.46959 * 59.99796 * 1 2 3 31 31 H 1.08992 * 109.46907 * 299.99664 * 5 3 2 32 32 H 1.08996 * 109.47131 * 60.00119 * 5 3 2 33 33 H 1.08997 * 109.47072 * 300.00131 * 6 5 3 34 34 H 1.09000 * 109.46831 * 59.99731 * 6 5 3 35 35 H 1.08000 * 119.97550 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.94323 * 180.25315 * 9 8 7 37 37 H 1.08004 * 119.96986 * 179.72178 * 10 9 8 38 38 H 1.07992 * 120.03151 * 180.02562 * 11 10 9 39 39 H 1.09010 * 111.00290 * 271.93436 * 16 14 13 40 40 H 1.08996 * 111.00756 * 35.78794 * 16 14 13 41 41 H 1.09006 * 110.36528 * 204.14744 * 17 16 14 42 42 H 1.09004 * 110.46230 * 81.87568 * 17 16 14 43 43 H 0.97002 * 120.00295 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.87736 * 239.52385 * 27 18 17 45 45 H 1.08998 * 110.01155 * 118.42377 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7421 -0.0011 7 6 5.5051 2.8209 -0.0011 8 6 6.1897 2.9674 1.1902 9 6 7.5705 3.0350 1.1913 10 6 8.2695 2.9668 0.0000 11 6 7.5895 2.8256 -1.1939 12 6 6.2039 2.7523 -1.1972 13 8 5.5325 2.6134 -2.3707 14 6 6.3185 2.4318 -3.5502 15 1 7.1837 1.8024 -3.3423 16 6 5.4601 1.8310 -4.6947 17 6 6.2129 2.3412 -5.9487 18 7 6.6649 3.6982 -5.5914 19 6 6.9489 4.7037 -6.4766 20 1 7.2743 5.6672 -6.1130 21 6 6.8187 4.4845 -7.8411 22 7 6.4229 3.3101 -8.2841 23 14 7.2054 5.8564 -9.0485 24 1 7.6274 7.0686 -8.3018 25 1 8.3020 5.4256 -9.9524 26 1 5.9948 6.1653 -9.8511 27 6 6.7597 3.7933 -4.1273 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 3.9564 0.7806 0.8891 32 1 3.9557 0.7809 -0.8908 33 1 3.6101 3.2360 -0.8910 34 1 3.6107 3.2364 0.8889 35 1 5.6459 3.0249 2.1215 36 1 8.1041 3.1454 2.1238 37 1 9.3480 3.0244 0.0032 38 1 8.1357 2.7720 -2.1240 39 1 5.4621 0.7417 -4.6541 40 1 4.4422 2.2196 -4.6649 41 1 5.5404 2.3788 -6.8058 42 1 7.0681 1.7014 -6.1663 43 1 6.3322 3.1567 -9.2377 44 1 6.1003 4.5813 -3.7637 45 1 7.7877 4.0050 -3.8331 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234344293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:37 Heat of formation + Delta-G solvation = -92.559579 kcal Electronic energy + Delta-G solvation = -26722.148532 eV Core-core repulsion = 22898.070554 eV Total energy + Delta-G solvation = -3824.077978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.63980 -41.25391 -39.33172 -37.66766 -37.54853 -35.15419 -34.27679 -31.43455 -31.31793 -30.45286 -29.11930 -28.52623 -26.56613 -25.68076 -23.74639 -22.64719 -22.07449 -21.52582 -21.33999 -19.12599 -19.02513 -18.59531 -17.70078 -17.55441 -17.11392 -16.79270 -16.62669 -16.36908 -15.57757 -15.48521 -15.15141 -15.02150 -14.64601 -14.35366 -14.22690 -13.90800 -13.75640 -13.69102 -13.59844 -13.25078 -13.02458 -12.91243 -12.74221 -12.64647 -12.51437 -12.29006 -12.01753 -11.98226 -11.91736 -11.78356 -11.74236 -11.60810 -11.50270 -11.37958 -10.80577 -9.75929 -9.05541 -8.96207 -7.83064 -5.28523 0.39353 0.54832 1.16874 1.45342 1.46394 1.56846 1.79820 2.18956 2.47545 2.85667 3.27991 3.59586 3.64627 3.69601 3.85299 3.92066 3.95583 4.01512 4.13962 4.21834 4.28738 4.32751 4.34617 4.40873 4.53030 4.55609 4.60094 4.62419 4.72063 4.76811 4.85392 4.91793 4.94159 4.99464 5.07903 5.23434 5.40117 5.40265 5.49852 5.53943 5.58422 5.65353 5.72214 5.96451 6.23951 6.51652 6.71674 7.04688 7.69560 8.32376 9.19291 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003308 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.780957 B = 8461.568580 C =10152.402471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.542 6.542 5 C -0.100 4.100 6 C -0.052 4.052 7 C -0.129 4.129 8 C -0.075 4.075 9 C -0.155 4.155 10 C -0.085 4.085 11 C -0.221 4.221 12 C 0.114 3.886 13 O -0.311 6.311 14 C 0.090 3.910 15 H 0.094 0.906 16 C -0.121 4.121 17 C 0.155 3.845 18 N -0.623 5.623 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.063 4.063 22 N -0.946 5.946 23 Si 0.983 3.017 24 H -0.269 1.269 25 H -0.288 1.288 26 H -0.289 1.289 27 C 0.118 3.882 28 H 0.131 0.869 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.002 0.998 43 H 0.250 0.750 44 H 0.019 0.981 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -8.265 22.760 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.308 3.692 4 O -0.432 6.432 5 C -0.137 4.137 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.093 4.093 9 C -0.173 4.173 10 C -0.103 4.103 11 C -0.239 4.239 12 C 0.069 3.931 13 O -0.224 6.224 14 C 0.033 3.967 15 H 0.112 0.888 16 C -0.159 4.159 17 C 0.030 3.970 18 N -0.351 5.351 19 C -0.373 4.373 20 H 0.096 0.904 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.811 3.189 24 H -0.194 1.194 25 H -0.215 1.215 26 H -0.216 1.216 27 C -0.008 4.008 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.153 0.847 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.118 0.882 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.020 0.980 43 H 0.060 0.940 44 H 0.037 0.963 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.022 -7.937 22.517 24.212 hybrid contribution 0.208 0.906 -1.381 1.664 sum -3.814 -7.031 21.137 22.600 Atomic orbital electron populations 1.23528 0.75048 1.05640 1.02370 1.86509 1.24870 1.33020 1.83758 1.24253 0.92951 0.81016 0.70961 1.90663 1.68156 1.37437 1.46925 1.21403 0.85671 0.99230 1.07385 1.20080 0.90544 0.94828 1.03486 1.19225 0.95294 1.07663 0.90778 1.21216 0.94559 0.96682 0.96811 1.21380 0.94196 1.03020 0.98737 1.21259 1.00937 0.96543 0.91566 1.21475 0.93144 1.08873 1.00446 1.19228 0.91214 0.96773 0.85860 1.86119 1.35960 1.86771 1.13584 1.23306 0.94647 0.95802 0.82906 0.88810 1.22982 0.98918 1.01041 0.92980 1.21774 0.95978 0.83681 0.95546 1.44673 1.79164 1.10790 1.00436 1.19451 1.38061 0.92208 0.87542 0.90434 1.25644 1.01936 0.99637 0.98311 1.70003 1.53941 1.22703 1.12901 0.84951 0.77057 0.78368 0.78570 1.19353 1.21483 1.21621 1.21821 0.97807 0.96165 0.84981 0.85040 0.91651 0.92637 0.84717 0.87425 0.92663 0.89358 0.82584 0.83001 0.84032 0.86123 0.88234 0.91593 0.90129 0.97986 0.94025 0.96253 0.95122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.37 -7.49 10.57 -51.47 -0.54 -8.03 16 3 C 0.46 10.84 7.96 71.24 0.57 11.41 16 4 O -0.54 -16.12 15.73 21.97 0.35 -15.78 16 5 C -0.10 -1.92 5.79 29.85 0.17 -1.75 16 6 C -0.05 -1.19 4.36 29.85 0.13 -1.06 16 7 C -0.13 -3.02 5.15 -19.77 -0.10 -3.13 16 8 C -0.07 -1.33 9.68 22.26 0.22 -1.11 16 9 C -0.16 -2.64 10.04 22.28 0.22 -2.41 16 10 C -0.09 -1.76 10.04 22.25 0.22 -1.53 16 11 C -0.22 -5.89 8.78 22.37 0.20 -5.69 16 12 C 0.11 3.28 6.60 22.50 0.15 3.43 16 13 O -0.31 -10.43 9.01 -92.43 -0.83 -11.27 16 14 C 0.09 3.24 2.77 31.78 0.09 3.33 16 15 H 0.09 3.05 6.57 -2.39 -0.02 3.03 16 16 C -0.12 -4.63 6.81 31.99 0.22 -4.42 16 17 C 0.15 7.68 5.89 86.86 0.51 8.19 16 18 N -0.62 -33.12 3.39 -691.97 -2.35 -35.47 16 19 C -0.24 -14.03 10.27 84.03 0.86 -13.16 16 20 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 21 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 22 N -0.95 -56.22 10.09 21.65 0.22 -56.00 16 23 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 27 C 0.12 5.18 6.53 86.73 0.57 5.75 16 28 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 30 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 31 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 1.63 7.65 -2.39 -0.02 1.61 16 34 H 0.09 1.79 8.01 -2.39 -0.02 1.78 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.12 3.43 5.33 -2.91 -0.02 3.41 16 39 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.08 4.54 5.87 -2.38 -0.01 4.52 16 42 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.02 0.90 8.06 -2.39 -0.02 0.88 16 45 H 0.03 1.31 7.44 -2.39 -0.02 1.29 16 Total: -1.00 -71.72 370.72 5.53 -66.19 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.98 Total: 15.97 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.68 Total: -3.67 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -2.13 Total: -91.47 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.03 Total: -35.08 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -71.72 5.53 -66.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234344293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.368 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds