Wall clock time and date at job start Tue Mar 31 2020 12:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99805 * 2 1 4 4 O 1.20826 * 120.00491 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99593 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47232 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47209 * 179.97438 * 6 5 3 8 8 C 1.38166 * 120.03066 * 264.99786 * 7 6 5 9 9 C 1.38240 * 120.05562 * 180.02562 * 8 7 6 10 10 C 1.38289 * 120.11353 * 0.27201 * 9 8 7 11 11 C 1.38124 * 120.05472 * 359.45102 * 10 9 8 12 12 C 1.38718 * 120.02764 * 85.02243 * 7 6 5 13 13 O 1.35903 * 120.05085 * 359.95476 * 12 7 6 14 14 C 1.42898 * 116.99500 * 174.48806 * 13 12 7 15 15 H 1.08997 * 110.64583 * 326.90480 * 14 13 12 16 16 C 1.55160 * 110.71981 * 203.76459 * 14 13 12 17 17 C 1.54908 * 101.58358 * 206.13467 * 16 14 13 18 18 N 1.47420 * 104.83025 * 37.00896 * 17 16 14 19 19 C 1.36940 * 125.64489 * 155.90685 * 18 17 16 20 20 H 1.08006 * 119.99776 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00250 * 359.97438 * 19 18 17 22 22 N 1.31613 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47270 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46886 * 119.99985 * 23 21 19 26 26 H 1.48500 * 109.47344 * 239.99854 * 23 21 19 27 27 C 1.47020 * 108.70717 * 335.87134 * 18 17 16 28 28 H 1.09003 * 109.46991 * 59.99845 * 1 2 3 29 29 H 1.08996 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46946 * 300.00119 * 1 2 3 31 31 H 1.09002 * 109.47423 * 59.99965 * 5 3 2 32 32 H 1.08999 * 109.47486 * 299.99633 * 5 3 2 33 33 H 1.09002 * 109.46987 * 59.99646 * 6 5 3 34 34 H 1.08999 * 109.46543 * 300.00159 * 6 5 3 35 35 H 1.07995 * 119.97002 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.94242 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.97443 * 179.72908 * 10 9 8 38 38 H 1.07998 * 120.02927 * 180.27635 * 11 10 9 39 39 H 1.08995 * 111.00512 * 324.21480 * 16 14 13 40 40 H 1.09004 * 111.00480 * 88.02403 * 16 14 13 41 41 H 1.08995 * 110.36778 * 155.85331 * 17 16 14 42 42 H 1.09003 * 110.36896 * 278.17299 * 17 16 14 43 43 H 0.96994 * 120.00411 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.88258 * 241.64521 * 27 18 17 45 45 H 1.08996 * 109.88492 * 120.47469 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7420 0.0011 7 6 5.5051 2.8209 0.0023 8 6 6.1893 2.9610 1.1945 9 6 7.5697 3.0339 1.1962 10 6 8.2692 2.9724 0.0048 11 6 7.5903 2.8266 -1.1892 12 6 6.2048 2.7532 -1.1936 13 8 5.5341 2.6149 -2.3675 14 6 6.3079 2.6738 -3.5674 15 1 7.1493 3.3565 -3.4490 16 6 5.4238 3.0958 -4.7706 17 6 6.1886 2.4583 -5.9573 18 7 6.6900 1.1735 -5.4365 19 6 7.0067 0.0755 -6.1910 20 1 7.3684 -0.8226 -5.7123 21 6 6.8629 0.1167 -7.5711 22 7 6.4227 1.2113 -8.1544 23 14 7.2957 -1.3809 -8.6003 24 1 7.7644 -2.4739 -7.7112 25 1 6.0941 -1.8320 -9.3474 26 1 8.3718 -1.0274 -9.5607 27 6 6.7946 1.2666 -3.9730 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9565 0.7805 -0.8891 32 1 3.9558 0.7809 0.8908 33 1 3.6102 3.2360 0.8911 34 1 3.6108 3.2363 -0.8889 35 1 5.6450 3.0137 2.1258 36 1 8.1027 3.1431 2.1292 37 1 9.3474 3.0340 0.0084 38 1 8.1373 2.7741 -2.1190 39 1 4.4204 2.6792 -4.6833 40 1 5.3868 4.1810 -4.8667 41 1 5.5141 2.2901 -6.7968 42 1 7.0197 3.0955 -6.2593 43 1 6.3226 1.2403 -9.1188 44 1 7.8316 1.1303 -3.6660 45 1 6.1652 0.5083 -3.5073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234344295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:43 Heat of formation + Delta-G solvation = -75.099430 kcal Electronic energy + Delta-G solvation = -26804.033531 eV Core-core repulsion = 22980.712683 eV Total energy + Delta-G solvation = -3823.320849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63525 -40.15830 -38.00606 -36.68382 -36.06764 -34.19261 -32.33004 -30.41988 -29.88684 -29.10393 -27.81045 -27.35073 -24.80475 -24.62281 -22.58202 -21.58070 -20.60871 -20.20948 -20.00248 -18.00641 -17.61919 -17.04676 -16.75602 -16.65142 -15.85687 -15.56279 -15.14232 -14.75320 -14.49617 -14.24047 -13.83189 -13.74050 -13.71703 -13.08261 -12.88155 -12.74999 -12.62249 -12.48406 -12.15578 -11.85906 -11.79664 -11.61484 -11.55147 -11.05630 -11.04399 -10.93308 -10.90550 -10.78974 -10.56562 -10.40688 -10.24388 -10.05646 -9.84849 -9.64162 -8.84781 -8.71597 -8.01083 -6.91716 -5.71453 -3.13859 1.30083 1.49631 2.13656 2.64456 3.37098 3.41455 3.44564 3.47348 3.77749 4.44876 4.57096 4.78110 4.85052 4.94204 5.00124 5.00407 5.05758 5.11812 5.16924 5.29357 5.32869 5.34840 5.40403 5.46578 5.52054 5.58893 5.60268 5.74735 5.83548 5.94056 6.14300 6.22317 6.29820 6.35035 6.43076 6.45137 6.46292 6.52956 6.59496 6.60570 6.90960 7.40005 7.56562 7.65319 7.68311 7.78770 8.28132 9.15118 9.75537 10.38489 11.32950 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.003659 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.934710 B = 7651.047360 C = 9481.500348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.510 6.510 5 C -0.108 4.108 6 C -0.055 4.055 7 C -0.127 4.127 8 C -0.079 4.079 9 C -0.166 4.166 10 C -0.080 4.080 11 C -0.206 4.206 12 C 0.147 3.853 13 O -0.301 6.301 14 C 0.069 3.931 15 H 0.077 0.923 16 C -0.136 4.136 17 C 0.153 3.847 18 N -0.601 5.601 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.121 3.879 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.133 0.867 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.025 0.975 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.269 2.737 19.439 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.398 6.398 5 C -0.146 4.146 6 C -0.092 4.092 7 C -0.128 4.128 8 C -0.097 4.097 9 C -0.184 4.184 10 C -0.098 4.098 11 C -0.225 4.225 12 C 0.100 3.900 13 O -0.213 6.213 14 C 0.012 3.988 15 H 0.095 0.905 16 C -0.175 4.175 17 C 0.028 3.972 18 N -0.328 5.328 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.006 4.006 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.131 0.869 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.709 2.921 19.170 19.955 hybrid contribution 0.425 -0.688 -0.606 1.010 sum -4.284 2.233 18.565 19.183 Atomic orbital electron populations 1.23252 0.76504 1.03615 1.02490 1.86529 1.23369 1.33712 1.84134 1.23920 0.92336 0.81186 0.71852 1.90660 1.67358 1.36330 1.45410 1.21425 0.86808 1.00018 1.06319 1.20151 0.90695 0.93998 1.04387 1.19075 0.95158 1.07720 0.90823 1.20828 0.94156 0.98222 0.96493 1.20959 0.94133 1.05340 0.97958 1.20948 0.99715 0.97201 0.91936 1.21420 0.93388 1.07879 0.99801 1.18947 0.90535 0.94176 0.86310 1.86159 1.36847 1.86100 1.12213 1.23702 0.94653 0.98380 0.82026 0.90468 1.23206 0.99853 1.00047 0.94361 1.21992 0.96454 0.84771 0.93989 1.44383 1.77205 1.12005 0.99234 1.19131 1.36761 0.90822 0.88469 0.90302 1.24794 1.01607 0.97731 0.96377 1.69763 1.52233 1.26019 1.09075 0.85975 0.77617 0.81585 0.80179 1.20467 1.21641 1.21679 1.21675 0.97630 0.93629 0.87651 0.91795 0.88180 0.92063 0.86924 0.87772 0.90501 0.89537 0.85713 0.86232 0.86043 0.84950 0.90831 0.91538 0.86878 0.96574 0.93635 0.95672 0.94716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.29 10.57 -39.24 -0.41 -4.70 16 3 C 0.46 5.93 7.96 36.01 0.29 6.22 16 4 O -0.51 -7.71 15.73 -18.75 -0.29 -8.00 16 5 C -0.11 -1.22 5.79 -27.88 -0.16 -1.38 16 6 C -0.05 -0.66 4.36 -27.88 -0.12 -0.78 16 7 C -0.13 -1.60 5.15 -104.47 -0.54 -2.14 16 8 C -0.08 -0.84 9.68 -39.61 -0.38 -1.22 16 9 C -0.17 -1.73 10.04 -39.56 -0.40 -2.12 16 10 C -0.08 -0.92 10.04 -39.60 -0.40 -1.32 16 11 C -0.21 -2.84 8.90 -39.43 -0.35 -3.19 16 12 C 0.15 2.15 6.64 -39.21 -0.26 1.89 16 13 O -0.30 -5.03 9.00 -19.44 -0.17 -5.20 16 14 C 0.07 1.23 2.74 -24.89 -0.07 1.17 16 15 H 0.08 1.29 6.26 -51.93 -0.33 0.97 16 16 C -0.14 -2.62 6.81 -24.58 -0.17 -2.79 16 17 C 0.15 3.66 5.89 -2.53 -0.01 3.64 16 18 N -0.60 -15.35 3.39 -170.08 -0.58 -15.93 16 19 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16 23 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.12 2.54 6.80 -3.06 -0.02 2.52 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 34 H 0.09 1.21 7.65 -51.93 -0.40 0.81 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 37 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.13 1.87 5.62 -52.49 -0.30 1.57 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.11 3.04 5.87 -51.93 -0.31 2.74 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.52 7.80 -51.93 -0.40 0.12 16 45 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 LS Contribution 371.47 15.07 5.60 5.60 Total: -1.00 -31.69 371.47 -8.86 -40.55 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.76 Total: 1.64 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.78 Total: -4.85 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.02 Total: -41.89 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.88 Total: -17.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.69 -8.86 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234344295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.545 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds