Wall clock time and date at job start Tue Mar 31 2020 12:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99805 * 2 1 4 4 O 1.20826 * 120.00491 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99593 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47232 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47209 * 179.97438 * 6 5 3 8 8 C 1.38166 * 120.03066 * 264.99786 * 7 6 5 9 9 C 1.38240 * 120.05562 * 180.02562 * 8 7 6 10 10 C 1.38289 * 120.11353 * 0.27201 * 9 8 7 11 11 C 1.38124 * 120.05472 * 359.45102 * 10 9 8 12 12 C 1.38718 * 120.02764 * 85.02243 * 7 6 5 13 13 O 1.35903 * 120.05085 * 359.95476 * 12 7 6 14 14 C 1.42898 * 116.99500 * 174.48806 * 13 12 7 15 15 H 1.08997 * 110.64583 * 326.90480 * 14 13 12 16 16 C 1.55160 * 110.71981 * 203.76459 * 14 13 12 17 17 C 1.54908 * 101.58358 * 206.13467 * 16 14 13 18 18 N 1.47420 * 104.83025 * 37.00896 * 17 16 14 19 19 C 1.36940 * 125.64489 * 155.90685 * 18 17 16 20 20 H 1.08006 * 119.99776 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00250 * 359.97438 * 19 18 17 22 22 N 1.31613 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99972 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47270 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46886 * 119.99985 * 23 21 19 26 26 H 1.48500 * 109.47344 * 239.99854 * 23 21 19 27 27 C 1.47020 * 108.70717 * 335.87134 * 18 17 16 28 28 H 1.09003 * 109.46991 * 59.99845 * 1 2 3 29 29 H 1.08996 * 109.46915 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46946 * 300.00119 * 1 2 3 31 31 H 1.09002 * 109.47423 * 59.99965 * 5 3 2 32 32 H 1.08999 * 109.47486 * 299.99633 * 5 3 2 33 33 H 1.09002 * 109.46987 * 59.99646 * 6 5 3 34 34 H 1.08999 * 109.46543 * 300.00159 * 6 5 3 35 35 H 1.07995 * 119.97002 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.94242 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.97443 * 179.72908 * 10 9 8 38 38 H 1.07998 * 120.02927 * 180.27635 * 11 10 9 39 39 H 1.08995 * 111.00512 * 324.21480 * 16 14 13 40 40 H 1.09004 * 111.00480 * 88.02403 * 16 14 13 41 41 H 1.08995 * 110.36778 * 155.85331 * 17 16 14 42 42 H 1.09003 * 110.36896 * 278.17299 * 17 16 14 43 43 H 0.96994 * 120.00411 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.88258 * 241.64521 * 27 18 17 45 45 H 1.08996 * 109.88492 * 120.47469 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0003 2.7420 0.0011 7 6 5.5051 2.8209 0.0023 8 6 6.1893 2.9610 1.1945 9 6 7.5697 3.0339 1.1962 10 6 8.2692 2.9724 0.0048 11 6 7.5903 2.8266 -1.1892 12 6 6.2048 2.7532 -1.1936 13 8 5.5341 2.6149 -2.3675 14 6 6.3079 2.6738 -3.5674 15 1 7.1493 3.3565 -3.4490 16 6 5.4238 3.0958 -4.7706 17 6 6.1886 2.4583 -5.9573 18 7 6.6900 1.1735 -5.4365 19 6 7.0067 0.0755 -6.1910 20 1 7.3684 -0.8226 -5.7123 21 6 6.8629 0.1167 -7.5711 22 7 6.4227 1.2113 -8.1544 23 14 7.2957 -1.3809 -8.6003 24 1 7.7644 -2.4739 -7.7112 25 1 6.0941 -1.8320 -9.3474 26 1 8.3718 -1.0274 -9.5607 27 6 6.7946 1.2666 -3.9730 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9565 0.7805 -0.8891 32 1 3.9558 0.7809 0.8908 33 1 3.6102 3.2360 0.8911 34 1 3.6108 3.2363 -0.8889 35 1 5.6450 3.0137 2.1258 36 1 8.1027 3.1431 2.1292 37 1 9.3474 3.0340 0.0084 38 1 8.1373 2.7741 -2.1190 39 1 4.4204 2.6792 -4.6833 40 1 5.3868 4.1810 -4.8667 41 1 5.5141 2.2901 -6.7968 42 1 7.0197 3.0955 -6.2593 43 1 6.3226 1.2403 -9.1188 44 1 7.8316 1.1303 -3.6660 45 1 6.1652 0.5083 -3.5073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234344295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:42 Heat of formation + Delta-G solvation = -91.826408 kcal Electronic energy + Delta-G solvation = -26804.758868 eV Core-core repulsion = 22980.712683 eV Total energy + Delta-G solvation = -3824.046185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64495 -41.25443 -39.33334 -37.68123 -37.55149 -35.15587 -34.27128 -31.41242 -31.32255 -30.47459 -29.10403 -28.53371 -26.56228 -25.68871 -23.76680 -22.63297 -22.07162 -21.57175 -21.31313 -19.12103 -19.01927 -18.62902 -17.70986 -17.58630 -17.08100 -16.78425 -16.58483 -16.36658 -15.58004 -15.53114 -15.11150 -15.03732 -14.66723 -14.32269 -14.27193 -13.92529 -13.76161 -13.66088 -13.56464 -13.26681 -13.02236 -12.91419 -12.73655 -12.70519 -12.48357 -12.29420 -12.01730 -11.99135 -11.92334 -11.80359 -11.70255 -11.60318 -11.51891 -11.35738 -10.79832 -9.75936 -9.05613 -8.95189 -7.81833 -5.27446 0.39291 0.54778 1.14686 1.46630 1.47529 1.58033 1.79006 2.18844 2.48823 2.85777 3.29631 3.59603 3.65280 3.68116 3.85253 3.92889 3.96263 4.00973 4.13313 4.20426 4.27121 4.31390 4.33524 4.40523 4.52650 4.55616 4.60219 4.62394 4.70125 4.76717 4.85763 4.91644 4.93666 4.99733 5.07869 5.22599 5.38520 5.41554 5.49844 5.53455 5.58596 5.65353 5.72585 5.96459 6.24425 6.51747 6.69549 7.05413 7.70715 8.33655 9.20709 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.003659 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.934710 B = 7651.047360 C = 9481.500348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.464 3.536 4 O -0.538 6.538 5 C -0.103 4.103 6 C -0.050 4.050 7 C -0.129 4.129 8 C -0.074 4.074 9 C -0.156 4.156 10 C -0.085 4.085 11 C -0.221 4.221 12 C 0.114 3.886 13 O -0.311 6.311 14 C 0.088 3.912 15 H 0.092 0.908 16 C -0.124 4.124 17 C 0.156 3.844 18 N -0.623 5.623 19 C -0.243 4.243 20 H 0.081 0.919 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.982 3.018 24 H -0.267 1.267 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.121 3.879 28 H 0.055 0.945 29 H 0.129 0.871 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.000 1.000 43 H 0.249 0.751 44 H 0.031 0.969 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 2.391 22.235 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.428 6.428 5 C -0.140 4.140 6 C -0.087 4.087 7 C -0.130 4.130 8 C -0.092 4.092 9 C -0.174 4.174 10 C -0.102 4.102 11 C -0.240 4.240 12 C 0.069 3.931 13 O -0.224 6.224 14 C 0.031 3.969 15 H 0.110 0.890 16 C -0.162 4.162 17 C 0.031 3.969 18 N -0.350 5.350 19 C -0.372 4.372 20 H 0.098 0.902 21 C -0.255 4.255 22 N -0.597 5.597 23 Si 0.810 3.190 24 H -0.192 1.192 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.005 4.005 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.151 0.849 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.174 0.826 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.139 0.861 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.018 0.982 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.130 2.565 22.006 22.537 hybrid contribution 0.242 -0.589 -1.334 1.478 sum -3.888 1.976 20.673 21.128 Atomic orbital electron populations 1.23533 0.74951 1.05609 1.02482 1.86520 1.25005 1.33191 1.83732 1.24194 0.92867 0.81024 0.70984 1.90644 1.68072 1.37216 1.46912 1.21424 0.85866 0.99748 1.06985 1.20079 0.90538 0.94307 1.03787 1.19236 0.95297 1.07625 0.90850 1.21215 0.94574 0.96651 0.96780 1.21381 0.94197 1.03038 0.98742 1.21258 1.00933 0.96504 0.91550 1.21458 0.93111 1.08953 1.00477 1.19248 0.91229 0.96640 0.85983 1.86121 1.36819 1.86974 1.12471 1.23316 0.94606 0.96414 0.82522 0.89020 1.23002 0.98872 1.01269 0.93089 1.21749 0.95558 0.84555 0.95011 1.44668 1.77313 1.11949 1.01113 1.19480 1.36729 0.91730 0.89227 0.90153 1.25639 1.01874 1.00539 0.97461 1.70005 1.53047 1.27737 1.08926 0.84956 0.77039 0.78597 0.78390 1.19157 1.21680 1.21636 1.21760 0.97832 0.95592 0.85270 0.92566 0.85252 0.91364 0.88234 0.84927 0.89027 0.92194 0.82561 0.82995 0.83992 0.86066 0.91505 0.88793 0.90112 0.98207 0.94081 0.95094 0.95559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 113.37 1.20 1.65 16 2 O -0.37 -8.41 10.57 -51.37 -0.54 -8.95 16 3 C 0.46 11.60 7.96 71.24 0.57 12.16 16 4 O -0.54 -16.18 15.73 21.96 0.35 -15.83 16 5 C -0.10 -2.20 5.79 29.85 0.17 -2.03 16 6 C -0.05 -1.14 4.36 29.85 0.13 -1.01 16 7 C -0.13 -3.02 5.15 -19.77 -0.10 -3.12 16 8 C -0.07 -1.31 9.68 22.25 0.22 -1.09 16 9 C -0.16 -2.60 10.04 22.28 0.22 -2.38 16 10 C -0.08 -1.72 10.04 22.25 0.22 -1.50 16 11 C -0.22 -5.84 8.90 22.37 0.20 -5.64 16 12 C 0.11 3.26 6.64 22.51 0.15 3.40 16 13 O -0.31 -10.42 9.00 -92.46 -0.83 -11.26 16 14 C 0.09 3.19 2.74 31.78 0.09 3.28 16 15 H 0.09 3.05 6.26 -2.39 -0.01 3.04 16 16 C -0.12 -4.84 6.81 31.99 0.22 -4.62 16 17 C 0.16 7.76 5.89 86.86 0.51 8.27 16 18 N -0.62 -32.76 3.39 -692.00 -2.35 -35.11 16 19 C -0.24 -13.79 10.27 84.03 0.86 -12.93 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 22 N -0.95 -56.22 10.09 21.65 0.22 -56.00 16 23 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 27 C 0.12 5.20 6.80 86.73 0.59 5.79 16 28 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 29 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 31 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.09 1.79 8.01 -2.39 -0.02 1.77 16 34 H 0.06 1.69 7.65 -2.39 -0.02 1.67 16 35 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.12 3.38 5.62 -2.91 -0.02 3.37 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 41 H 0.08 4.56 5.87 -2.39 -0.01 4.54 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.03 1.29 7.80 -2.39 -0.02 1.27 16 45 H 0.03 1.17 8.06 -2.39 -0.02 1.15 16 Total: -1.00 -70.48 371.47 5.56 -64.92 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.98 Total: 17.44 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.71 Total: -2.81 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -2.13 Total: -91.11 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -1.03 Total: -36.04 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -70.48 5.56 -64.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234344295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.907 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds