Wall clock time and date at job start Tue Mar 31 2020 12:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 116.99841 * 2 1 4 4 O 1.20824 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00250 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47680 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.54119 * 305.10652 * 6 5 3 8 8 C 1.53100 * 109.51000 * 184.99859 * 6 5 3 9 9 N 1.47014 * 109.25737 * 183.21718 * 8 6 5 10 10 C 1.46897 * 110.99620 * 182.39178 * 9 8 6 11 11 C 1.50710 * 109.46867 * 164.71379 * 10 9 8 12 12 C 1.37636 * 120.12707 * 103.38414 * 11 10 9 13 13 C 1.38614 * 120.25014 * 180.02562 * 12 11 10 14 14 C 1.38650 * 120.49939 * 359.97438 * 13 12 11 15 15 C 1.37598 * 120.25097 * 0.02562 * 14 13 12 16 16 C 1.40694 * 120.12657 * 283.40272 * 11 10 9 17 17 C 1.41393 * 120.24752 * 359.96050 * 16 11 10 18 18 H 1.08007 * 119.99656 * 29.13585 * 17 16 11 19 19 C 1.39940 * 120.00231 * 209.13193 * 17 16 11 20 20 N 1.30830 * 119.99999 * 11.67716 * 19 17 16 21 21 Si 1.86798 * 120.00158 * 191.67396 * 19 17 16 22 22 H 1.48498 * 109.47331 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47010 * 120.00509 * 21 19 17 24 24 H 1.48507 * 109.47186 * 240.00183 * 21 19 17 25 25 C 1.47012 * 110.75341 * 58.61410 * 9 8 6 26 26 C 1.53093 * 109.25816 * 301.38182 * 25 9 8 27 27 O 1.43012 * 109.25995 * 56.85214 * 26 25 9 28 28 H 1.08995 * 109.47548 * 300.00092 * 1 2 3 29 29 H 1.09004 * 109.47280 * 60.00394 * 1 2 3 30 30 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47139 * 59.99376 * 5 3 2 32 32 H 1.09002 * 109.46673 * 300.00118 * 5 3 2 33 33 H 1.09002 * 109.50743 * 63.27906 * 8 6 5 34 34 H 1.08999 * 109.54137 * 303.17003 * 8 6 5 35 35 H 1.09004 * 109.47502 * 44.71714 * 10 9 8 36 36 H 1.09000 * 109.47237 * 284.71000 * 10 9 8 37 37 H 1.08002 * 119.87275 * 0.02562 * 12 11 10 38 38 H 1.08001 * 119.74834 * 180.02562 * 13 12 11 39 39 H 1.08001 * 119.87889 * 180.28029 * 14 13 12 40 40 H 1.08005 * 120.13457 * 179.97438 * 15 14 13 41 41 H 0.96996 * 119.99756 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.51024 * 61.31915 * 25 9 8 43 43 H 1.09000 * 109.50081 * 181.45122 * 25 9 8 44 44 H 1.08996 * 109.51112 * 296.91540 * 26 25 9 45 45 H 1.09000 * 109.54214 * 176.80590 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5367 3.2590 -0.8414 8 6 5.5236 2.8248 -0.1274 9 7 5.9409 4.2323 -0.0498 10 6 7.3939 4.3608 -0.2239 11 6 7.7398 5.7988 -0.5136 12 6 8.2833 6.5907 0.4722 13 6 8.6019 7.9138 0.2087 14 6 8.3781 8.4546 -1.0482 15 6 7.8357 7.6815 -2.0490 16 6 7.5080 6.3370 -1.7927 17 6 6.9505 5.5329 -2.8135 18 1 6.2875 4.7193 -2.5584 19 6 7.2578 5.7911 -4.1541 20 7 8.2268 6.6168 -4.4557 21 14 6.2845 4.9570 -5.5128 22 1 5.2508 4.0762 -4.9122 23 1 5.6280 5.9881 -6.3560 24 1 7.2016 4.1431 -6.3506 25 6 5.5069 4.8351 1.2188 26 6 3.9836 4.7324 1.3315 27 8 3.5940 3.3607 1.2228 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 5.8327 2.4057 -1.0850 34 1 5.9877 2.2624 0.6828 35 1 7.7170 3.7348 -1.0557 36 1 7.8987 4.0424 0.6881 37 1 8.4622 6.1797 1.4548 38 1 9.0284 8.5277 0.9882 39 1 8.6343 9.4853 -1.2438 40 1 7.6619 8.1048 -3.0273 41 1 8.4400 6.7955 -5.3849 42 1 5.9700 4.3051 2.0510 43 1 5.8038 5.8836 1.2438 44 1 3.5196 5.3071 0.5300 45 1 3.6619 5.1267 2.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:07 Heat of formation + Delta-G solvation = -106.069739 kcal Electronic energy + Delta-G solvation = -27314.877552 eV Core-core repulsion = 23490.213730 eV Total energy + Delta-G solvation = -3824.663822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57743 -39.30997 -37.66401 -36.51847 -35.13565 -33.55955 -33.00120 -30.61393 -29.42576 -29.19376 -27.69248 -26.43841 -25.07882 -23.64790 -22.91131 -20.93685 -20.80027 -20.08011 -19.40414 -17.61255 -17.10191 -16.87101 -16.67926 -15.94939 -15.85040 -15.27568 -14.77513 -14.61926 -14.53375 -14.18622 -13.66474 -13.59499 -13.45085 -13.19505 -13.13080 -12.56708 -12.33810 -12.23256 -12.05908 -11.62839 -11.52528 -11.37315 -11.17962 -11.04450 -11.02260 -10.90729 -10.75075 -10.56902 -10.52119 -10.30778 -10.24503 -9.54859 -9.39193 -9.18147 -9.16182 -7.78146 -7.34022 -7.24282 -6.66327 -4.29381 2.20821 2.58440 2.79842 2.97079 3.11298 3.16658 3.26222 3.84163 3.98895 4.33245 4.64795 4.72879 4.88520 4.93697 5.00076 5.11793 5.22478 5.31073 5.34666 5.39809 5.48518 5.60587 5.69934 5.81077 5.84643 5.97881 6.07314 6.15948 6.23120 6.26160 6.29961 6.32767 6.49745 6.50798 6.84940 7.15214 7.29875 7.34841 7.40465 7.54459 7.57355 7.70149 7.72463 7.95271 8.10817 8.18669 8.36393 8.72887 8.99282 9.05382 10.28449 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.004019 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.819942 B = 6964.641034 C = 8582.123084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.461 3.539 4 O -0.491 6.491 5 C -0.106 4.106 6 C 0.105 3.895 7 H 0.078 0.922 8 C 0.026 3.974 9 N -0.519 5.519 10 C 0.128 3.872 11 C -0.191 4.191 12 C -0.089 4.089 13 C -0.242 4.242 14 C -0.108 4.108 15 C -0.158 4.158 16 C 0.131 3.869 17 C -0.446 4.446 18 H 0.090 0.910 19 C 0.071 3.929 20 N -0.804 5.804 21 Si 0.904 3.096 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.277 1.277 25 C 0.023 3.977 26 C 0.069 3.931 27 O -0.380 6.380 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.018 0.982 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.277 0.723 42 H 0.031 0.969 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 -11.085 6.620 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.303 3.697 4 O -0.376 6.376 5 C -0.143 4.143 6 C 0.046 3.954 7 H 0.096 0.904 8 C -0.103 4.103 9 N -0.243 5.243 10 C 0.002 3.998 11 C -0.193 4.193 12 C -0.108 4.108 13 C -0.261 4.261 14 C -0.127 4.127 15 C -0.177 4.177 16 C 0.129 3.871 17 C -0.476 4.476 18 H 0.108 0.892 19 C -0.145 4.145 20 N -0.430 5.430 21 Si 0.729 3.271 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.203 1.203 25 C -0.106 4.106 26 C -0.008 4.008 27 O -0.299 6.299 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.100 0.900 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.193 -10.547 6.167 15.290 hybrid contribution 0.107 -0.427 -0.231 0.497 sum -9.086 -10.974 5.936 15.434 Atomic orbital electron populations 1.23217 0.76586 1.03383 1.02562 1.86495 1.23301 1.33879 1.84632 1.23645 0.92067 0.81276 0.72708 1.90705 1.66905 1.36133 1.43861 1.21429 0.88029 0.98353 1.06539 1.21867 0.93722 0.90768 0.88997 0.90395 1.22716 0.94586 0.91152 1.01828 1.62203 1.15861 1.13361 1.32873 1.20639 0.84553 0.96198 0.98411 1.19470 1.09897 0.93939 0.95985 1.20373 0.99984 0.94039 0.96416 1.20310 1.12966 0.95936 0.96931 1.20691 1.00374 0.97739 0.93916 1.21385 1.03906 0.94115 0.98344 1.17380 0.87882 0.91155 0.90730 1.19744 1.24593 1.13716 0.89583 0.89222 1.25944 0.93874 0.94337 1.00310 1.69822 1.23430 1.29552 1.20218 0.86331 0.80455 0.79835 0.80505 1.18366 1.19989 1.20261 1.22733 0.95656 1.01765 0.90401 1.22622 0.93779 0.82459 1.01930 1.87911 1.78836 1.25316 1.37858 0.91970 0.91968 0.88328 0.86109 0.86990 0.89505 0.94595 0.90525 0.96424 0.89983 0.89820 0.89709 0.86537 0.91242 0.95086 0.89001 0.92115 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.37 -4.10 10.57 -39.25 -0.41 -4.51 16 3 C 0.46 6.00 7.84 36.00 0.28 6.29 16 4 O -0.49 -8.03 15.18 -23.98 -0.36 -8.40 16 5 C -0.11 -1.16 5.52 -27.89 -0.15 -1.31 16 6 C 0.10 1.51 2.35 -26.68 -0.06 1.45 16 7 H 0.08 1.28 7.95 -51.93 -0.41 0.87 16 8 C 0.03 0.38 4.91 -3.71 -0.02 0.36 16 9 N -0.52 -9.30 4.15 -235.75 -0.98 -10.28 16 10 C 0.13 2.50 4.30 -4.97 -0.02 2.48 16 11 C -0.19 -4.36 4.75 -103.91 -0.49 -4.85 16 12 C -0.09 -1.95 9.00 -39.66 -0.36 -2.30 16 13 C -0.24 -5.39 10.05 -39.29 -0.39 -5.78 16 14 C -0.11 -2.56 10.02 -39.66 -0.40 -2.95 16 15 C -0.16 -4.08 8.66 -38.87 -0.34 -4.41 16 16 C 0.13 3.36 5.54 -106.83 -0.59 2.76 16 17 C -0.45 -11.31 8.15 -37.74 -0.31 -11.61 16 18 H 0.09 2.21 6.80 -52.48 -0.36 1.86 16 19 C 0.07 1.76 5.23 -17.34 -0.09 1.67 16 20 N -0.80 -20.61 10.92 55.55 0.61 -20.00 16 21 Si 0.90 18.67 29.58 -169.99 -5.03 13.64 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 C 0.02 0.38 5.47 -3.71 -0.02 0.36 16 26 C 0.07 1.06 7.01 37.21 0.26 1.32 16 27 O -0.38 -6.04 9.72 -49.39 -0.48 -6.52 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.54 7.38 -51.93 -0.38 1.16 16 36 H 0.02 0.32 7.88 -51.93 -0.41 -0.09 16 37 H 0.08 1.60 8.01 -52.49 -0.42 1.18 16 38 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 3.13 6.29 -52.48 -0.33 2.80 16 41 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.65 6.90 -51.93 -0.36 1.29 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -29.77 367.71 -9.63 -39.39 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.87 Total: 6.31 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -1.64 Total: -15.18 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: -0.37 Total: -30.28 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -1.26 Total: -19.43 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.77 -9.63 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.676 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds