Wall clock time and date at job start Tue Mar 31 2020 12:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 116.99841 * 2 1 4 4 O 1.20824 * 120.00065 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00250 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47680 * 179.97438 * 5 3 2 7 7 H 1.08997 * 109.54119 * 305.10652 * 6 5 3 8 8 C 1.53100 * 109.51000 * 184.99859 * 6 5 3 9 9 N 1.47014 * 109.25737 * 183.21718 * 8 6 5 10 10 C 1.46897 * 110.99620 * 182.39178 * 9 8 6 11 11 C 1.50710 * 109.46867 * 164.71379 * 10 9 8 12 12 C 1.37636 * 120.12707 * 103.38414 * 11 10 9 13 13 C 1.38614 * 120.25014 * 180.02562 * 12 11 10 14 14 C 1.38650 * 120.49939 * 359.97438 * 13 12 11 15 15 C 1.37598 * 120.25097 * 0.02562 * 14 13 12 16 16 C 1.40694 * 120.12657 * 283.40272 * 11 10 9 17 17 C 1.41393 * 120.24752 * 359.96050 * 16 11 10 18 18 H 1.08007 * 119.99656 * 29.13585 * 17 16 11 19 19 C 1.39940 * 120.00231 * 209.13193 * 17 16 11 20 20 N 1.30830 * 119.99999 * 11.67716 * 19 17 16 21 21 Si 1.86798 * 120.00158 * 191.67396 * 19 17 16 22 22 H 1.48498 * 109.47331 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47010 * 120.00509 * 21 19 17 24 24 H 1.48507 * 109.47186 * 240.00183 * 21 19 17 25 25 C 1.47012 * 110.75341 * 58.61410 * 9 8 6 26 26 C 1.53093 * 109.25816 * 301.38182 * 25 9 8 27 27 O 1.43012 * 109.25995 * 56.85214 * 26 25 9 28 28 H 1.08995 * 109.47548 * 300.00092 * 1 2 3 29 29 H 1.09004 * 109.47280 * 60.00394 * 1 2 3 30 30 H 1.09001 * 109.47158 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47139 * 59.99376 * 5 3 2 32 32 H 1.09002 * 109.46673 * 300.00118 * 5 3 2 33 33 H 1.09002 * 109.50743 * 63.27906 * 8 6 5 34 34 H 1.08999 * 109.54137 * 303.17003 * 8 6 5 35 35 H 1.09004 * 109.47502 * 44.71714 * 10 9 8 36 36 H 1.09000 * 109.47237 * 284.71000 * 10 9 8 37 37 H 1.08002 * 119.87275 * 0.02562 * 12 11 10 38 38 H 1.08001 * 119.74834 * 180.02562 * 13 12 11 39 39 H 1.08001 * 119.87889 * 180.28029 * 14 13 12 40 40 H 1.08005 * 120.13457 * 179.97438 * 15 14 13 41 41 H 0.96996 * 119.99756 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.51024 * 61.31915 * 25 9 8 43 43 H 1.09000 * 109.50081 * 181.45122 * 25 9 8 44 44 H 1.08996 * 109.51112 * 296.91540 * 26 25 9 45 45 H 1.09000 * 109.54214 * 176.80590 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 -0.0011 7 1 3.5367 3.2590 -0.8414 8 6 5.5236 2.8248 -0.1274 9 7 5.9409 4.2323 -0.0498 10 6 7.3939 4.3608 -0.2239 11 6 7.7398 5.7988 -0.5136 12 6 8.2833 6.5907 0.4722 13 6 8.6019 7.9138 0.2087 14 6 8.3781 8.4546 -1.0482 15 6 7.8357 7.6815 -2.0490 16 6 7.5080 6.3370 -1.7927 17 6 6.9505 5.5329 -2.8135 18 1 6.2875 4.7193 -2.5584 19 6 7.2578 5.7911 -4.1541 20 7 8.2268 6.6168 -4.4557 21 14 6.2845 4.9570 -5.5128 22 1 5.2508 4.0762 -4.9122 23 1 5.6280 5.9881 -6.3560 24 1 7.2016 4.1431 -6.3506 25 6 5.5069 4.8351 1.2188 26 6 3.9836 4.7324 1.3315 27 8 3.5940 3.3607 1.2228 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9557 0.7809 -0.8908 32 1 3.9563 0.7806 0.8892 33 1 5.8327 2.4057 -1.0850 34 1 5.9877 2.2624 0.6828 35 1 7.7170 3.7348 -1.0557 36 1 7.8987 4.0424 0.6881 37 1 8.4622 6.1797 1.4548 38 1 9.0284 8.5277 0.9882 39 1 8.6343 9.4853 -1.2438 40 1 7.6619 8.1048 -3.0273 41 1 8.4400 6.7955 -5.3849 42 1 5.9700 4.3051 2.0510 43 1 5.8038 5.8836 1.2438 44 1 3.5196 5.3071 0.5300 45 1 3.6619 5.1267 2.2954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:06 Heat of formation + Delta-G solvation = -122.587950 kcal Electronic energy + Delta-G solvation = -27315.593835 eV Core-core repulsion = 23490.213730 eV Total energy + Delta-G solvation = -3825.380106 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58226 -40.56522 -39.34256 -37.51860 -36.52469 -35.40040 -34.08209 -32.28119 -31.24196 -30.29370 -28.77200 -27.71649 -26.78510 -25.03440 -24.15411 -22.74569 -21.90791 -21.28430 -21.07604 -18.95502 -18.58842 -17.88757 -17.64440 -17.32569 -16.93540 -16.91450 -16.35443 -16.04199 -15.74671 -15.63868 -15.21470 -14.86645 -14.66947 -14.47046 -14.33879 -14.20571 -13.55874 -13.34422 -13.17952 -13.11619 -12.92073 -12.85600 -12.72009 -12.68492 -12.36417 -12.27076 -12.18837 -11.96975 -11.77784 -11.60138 -11.43979 -11.31180 -11.09203 -11.00532 -10.54120 -9.22856 -9.13170 -9.02137 -8.49906 -6.20640 1.02555 1.15779 1.23490 1.40987 1.54113 1.55099 1.75014 2.25978 2.73013 2.84005 3.07366 3.70601 3.80077 3.89306 4.06111 4.13778 4.16073 4.28350 4.32622 4.33397 4.38861 4.40348 4.51892 4.55572 4.62909 4.64192 4.71307 4.73161 4.76442 4.84611 4.92662 4.98661 5.05879 5.16726 5.30393 5.40387 5.44028 5.58753 5.84062 6.02643 6.16051 6.17069 6.26227 6.32414 6.34035 6.52387 6.77563 6.84634 7.11652 7.18582 8.46831 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.004019 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.819942 B = 6964.641034 C = 8582.123084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.364 6.364 3 C 0.462 3.538 4 O -0.533 6.533 5 C -0.099 4.099 6 C 0.106 3.894 7 H 0.049 0.951 8 C 0.029 3.971 9 N -0.541 5.541 10 C 0.137 3.863 11 C -0.191 4.191 12 C -0.093 4.093 13 C -0.241 4.241 14 C -0.118 4.118 15 C -0.190 4.190 16 C 0.101 3.899 17 C -0.468 4.468 18 H 0.089 0.911 19 C 0.031 3.969 20 N -0.839 5.839 21 Si 0.970 3.030 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.268 1.268 25 C 0.030 3.970 26 C 0.072 3.928 27 O -0.387 6.387 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.133 0.867 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.281 0.719 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 -13.306 7.976 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.280 6.280 3 C 0.306 3.694 4 O -0.422 6.422 5 C -0.137 4.137 6 C 0.047 3.953 7 H 0.067 0.933 8 C -0.099 4.099 9 N -0.266 5.266 10 C 0.010 3.990 11 C -0.193 4.193 12 C -0.111 4.111 13 C -0.260 4.260 14 C -0.136 4.136 15 C -0.210 4.210 16 C 0.099 3.901 17 C -0.498 4.498 18 H 0.107 0.893 19 C -0.182 4.182 20 N -0.467 5.467 21 Si 0.792 3.208 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.193 1.193 25 C -0.099 4.099 26 C -0.005 4.005 27 O -0.306 6.306 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.155 0.845 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.401 -12.792 7.537 17.573 hybrid contribution 0.159 0.282 -0.538 0.628 sum -9.242 -12.510 6.999 17.056 Atomic orbital electron populations 1.23499 0.75135 1.05578 1.02211 1.86489 1.24750 1.32754 1.84032 1.24029 0.92818 0.81123 0.71461 1.90695 1.67937 1.37542 1.46061 1.21488 0.86834 0.96176 1.09158 1.21881 0.93293 0.92549 0.87558 0.93306 1.22746 0.94717 0.89458 1.02937 1.62045 1.14741 1.15754 1.34049 1.20477 0.85906 0.93827 0.98750 1.19873 1.08500 0.95794 0.95108 1.20722 0.99031 0.93902 0.97487 1.20692 1.11869 0.96587 0.96893 1.20933 1.00037 0.98498 0.94181 1.21352 1.06368 0.95032 0.98228 1.17726 0.88811 0.91323 0.92270 1.19886 1.25324 1.14190 0.90399 0.89291 1.26691 0.94421 0.94849 1.02241 1.69901 1.24829 1.31080 1.20843 0.85332 0.79076 0.78791 0.77598 1.17944 1.20035 1.19317 1.22656 0.96242 1.00723 0.90231 1.22616 0.93002 0.82424 1.02410 1.87913 1.79021 1.25239 1.38426 0.92362 0.92383 0.84858 0.83091 0.84524 0.88916 0.92552 0.91549 0.94619 0.86978 0.86973 0.88097 0.88829 0.90881 0.93660 0.90820 0.94258 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -7.38 10.57 -51.38 -0.54 -7.92 16 3 C 0.46 11.33 7.84 71.24 0.56 11.89 16 4 O -0.53 -17.37 15.18 26.98 0.41 -16.96 16 5 C -0.10 -1.92 5.52 29.85 0.16 -1.76 16 6 C 0.11 2.90 2.35 30.63 0.07 2.97 16 7 H 0.05 1.62 7.95 -2.39 -0.02 1.61 16 8 C 0.03 0.81 4.91 86.31 0.42 1.23 16 9 N -0.54 -18.85 4.15 -899.78 -3.73 -22.58 16 10 C 0.14 5.18 4.30 85.56 0.37 5.54 16 11 C -0.19 -8.64 4.75 -19.40 -0.09 -8.73 16 12 C -0.09 -3.89 9.00 22.22 0.20 -3.69 16 13 C -0.24 -10.38 10.05 22.46 0.23 -10.16 16 14 C -0.12 -5.59 10.02 22.22 0.22 -5.36 16 15 C -0.19 -10.15 8.66 22.73 0.20 -9.95 16 16 C 0.10 5.30 5.54 -21.29 -0.12 5.18 16 17 C -0.47 -24.33 8.15 23.46 0.19 -24.14 16 18 H 0.09 4.49 6.80 -2.91 -0.02 4.47 16 19 C 0.03 1.54 5.23 85.25 0.45 1.98 16 20 N -0.84 -44.51 10.92 21.83 0.24 -44.27 16 21 Si 0.97 38.94 29.58 68.60 2.03 40.96 16 22 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 25 C 0.03 0.94 5.47 86.31 0.47 1.41 16 26 C 0.07 2.17 7.01 72.01 0.50 2.67 16 27 O -0.39 -11.78 9.72 -135.44 -1.32 -13.10 16 28 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 29 H 0.06 0.94 8.13 -2.38 -0.02 0.92 16 30 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.43 8.05 -2.39 -0.02 2.41 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 2.63 7.38 -2.39 -0.02 2.61 16 36 H 0.04 1.21 7.88 -2.39 -0.02 1.19 16 37 H 0.11 4.00 8.01 -2.91 -0.02 3.97 16 38 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 39 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.09 5.32 6.29 -2.91 -0.02 5.30 16 41 H 0.28 13.67 8.30 -92.71 -0.77 12.91 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 2.58 6.90 -2.39 -0.02 2.57 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -66.28 367.71 3.09 -63.18 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: 0.98 Total: 29.96 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 5.03 Total: -29.27 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -3.50 Total: -66.86 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.45 Total: -37.98 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.96 kcal Total: -66.28 3.09 -63.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.403 kcal (2) G-P(sol) polarization free energy of solvation -66.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds