Wall clock time and date at job start Tue Mar 31 2020 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99986 * 2 1 4 4 O 1.20824 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99896 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47001 * 185.79908 * 5 3 2 7 7 H 1.09009 * 109.50469 * 306.94109 * 6 5 3 8 8 C 1.53092 * 109.54668 * 67.05120 * 6 5 3 9 9 O 1.43014 * 109.26343 * 176.80525 * 8 6 5 10 10 C 1.43019 * 113.73643 * 301.33697 * 9 8 6 11 11 C 1.53098 * 109.26262 * 58.66548 * 10 9 8 12 12 N 1.47015 * 109.50465 * 186.86052 * 6 5 3 13 13 C 1.46897 * 111.00210 * 57.62791 * 12 6 5 14 14 C 1.50700 * 109.47317 * 176.46477 * 13 12 6 15 15 C 1.37635 * 120.12608 * 259.99980 * 14 13 12 16 16 C 1.38619 * 120.24664 * 179.97438 * 15 14 13 17 17 C 1.38656 * 120.50156 * 0.02562 * 16 15 14 18 18 C 1.37595 * 120.24884 * 359.97438 * 17 16 15 19 19 C 1.40692 * 120.12831 * 80.24936 * 14 13 12 20 20 C 1.41400 * 120.24574 * 0.02597 * 19 14 13 21 21 H 1.08001 * 120.00019 * 329.87882 * 20 19 14 22 22 C 1.39944 * 120.00072 * 149.87092 * 20 19 14 23 23 N 1.30823 * 119.99824 * 166.18282 * 22 20 19 24 24 Si 1.86805 * 119.99985 * 346.17959 * 22 20 19 25 25 H 1.48503 * 109.46835 * 88.94164 * 24 22 20 26 26 H 1.48495 * 109.47148 * 208.94109 * 24 22 20 27 27 H 1.48498 * 109.47270 * 328.94233 * 24 22 20 28 28 H 1.09001 * 109.46683 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47127 * 300.00520 * 1 2 3 30 30 H 1.08998 * 109.46486 * 60.00505 * 1 2 3 31 31 H 1.08994 * 109.47275 * 65.79718 * 5 3 2 32 32 H 1.09001 * 109.46724 * 305.79285 * 5 3 2 33 33 H 1.08999 * 109.50921 * 296.74207 * 8 6 5 34 34 H 1.09000 * 109.50544 * 56.82884 * 8 6 5 35 35 H 1.09006 * 109.50931 * 178.60405 * 10 9 8 36 36 H 1.09000 * 109.50353 * 298.68640 * 10 9 8 37 37 H 1.08994 * 109.50877 * 183.21982 * 11 10 9 38 38 H 1.09001 * 109.50453 * 63.08503 * 11 10 9 39 39 H 1.09001 * 109.47365 * 56.46301 * 13 12 6 40 40 H 1.09003 * 109.47245 * 296.46497 * 13 12 6 41 41 H 1.08003 * 119.88038 * 0.02562 * 15 14 13 42 42 H 1.08006 * 119.75018 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.87321 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.13028 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0005 2.7347 0.1462 7 1 3.5076 3.3387 -0.6157 8 6 3.6130 3.2482 1.5354 9 8 4.0871 4.5883 1.6923 10 6 5.5031 4.7195 1.5398 11 6 5.9098 4.2210 0.1506 12 7 5.4583 2.8319 -0.0175 13 6 5.8789 2.2955 -1.3187 14 6 7.3638 2.4908 -1.4864 15 6 7.8419 3.5365 -2.2429 16 6 9.2073 3.7188 -2.3983 17 6 10.1061 2.8519 -1.7957 18 6 9.6506 1.7997 -1.0350 19 6 8.2665 1.6019 -0.8746 20 6 7.7868 0.5206 -0.0999 21 1 6.8500 0.6099 0.4302 22 6 8.5257 -0.6652 -0.0201 23 7 8.2360 -1.5562 0.8929 24 14 9.9254 -0.9757 -1.2175 25 1 11.1850 -0.4191 -0.6616 26 1 10.0810 -2.4373 -1.4288 27 1 9.6231 -0.3176 -2.5139 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 3.9517 0.8729 -0.9364 32 1 3.9603 0.6938 0.8345 33 1 2.5282 3.2314 1.6401 34 1 4.0621 2.6110 2.2973 35 1 5.7854 5.7668 1.6477 36 1 6.0078 4.1262 2.3023 37 1 6.9943 4.2657 0.0509 38 1 5.4474 4.8487 -0.6111 39 1 5.3513 2.8197 -2.1156 40 1 5.6447 1.2320 -1.3662 41 1 7.1508 4.2181 -2.7165 42 1 9.5737 4.5423 -2.9934 43 1 11.1678 3.0032 -1.9239 44 1 10.3525 1.1255 -0.5668 45 1 8.7485 -2.3779 0.9484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235524205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:21 Heat of formation + Delta-G solvation = -99.987421 kcal Electronic energy + Delta-G solvation = -27961.641203 eV Core-core repulsion = 24137.241130 eV Total energy + Delta-G solvation = -3824.400073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.66422 -39.39787 -37.91909 -36.57382 -35.47852 -33.59952 -32.69372 -30.74441 -30.25295 -28.97742 -27.54268 -26.72408 -25.20326 -23.47701 -23.14993 -21.42313 -20.89966 -19.95776 -19.32035 -17.68853 -17.32593 -16.73472 -16.62600 -16.13031 -15.81873 -15.59711 -14.85269 -14.74611 -14.35955 -14.13844 -14.00912 -13.68305 -13.44080 -13.37478 -13.04081 -12.73270 -12.64366 -12.14350 -12.06800 -11.89181 -11.75633 -11.58003 -11.39317 -10.99133 -10.87764 -10.78384 -10.76960 -10.66544 -10.44796 -10.25935 -10.17231 -9.70863 -9.50356 -9.29350 -9.09950 -7.90826 -7.64499 -7.53634 -6.91907 -4.46968 2.20506 2.48822 2.64272 2.69275 3.11043 3.20584 3.30748 3.96877 4.07802 4.27064 4.54261 4.79457 4.92208 5.00001 5.05661 5.06980 5.34123 5.35986 5.41215 5.45262 5.55756 5.60944 5.71751 5.81052 5.83627 5.92356 5.99830 6.02519 6.08568 6.14772 6.25546 6.27872 6.37508 6.40865 6.63247 6.66123 6.91934 7.17100 7.32876 7.36024 7.42444 7.51042 7.67248 7.71740 7.75539 7.91750 8.12452 8.43720 8.68460 8.84869 10.09140 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.004817 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.059403 B = 5811.873003 C = 7156.479993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.510 6.510 5 C -0.112 4.112 6 C 0.063 3.937 7 H 0.055 0.945 8 C 0.069 3.931 9 O -0.387 6.387 10 C 0.061 3.939 11 C 0.027 3.973 12 N -0.515 5.515 13 C 0.117 3.883 14 C -0.185 4.185 15 C -0.073 4.073 16 C -0.248 4.248 17 C -0.077 4.077 18 C -0.244 4.244 19 C 0.110 3.890 20 C -0.431 4.431 21 H 0.107 0.893 22 C 0.082 3.918 23 N -0.808 5.808 24 Si 0.912 3.088 25 H -0.272 1.272 26 H -0.295 1.295 27 H -0.248 1.248 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.099 0.901 38 H 0.033 0.967 39 H 0.019 0.981 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 3.146 -0.905 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.398 6.398 5 C -0.150 4.150 6 C -0.046 4.046 7 H 0.073 0.927 8 C -0.008 4.008 9 O -0.305 6.305 10 C -0.016 4.016 11 C -0.101 4.101 12 N -0.240 5.240 13 C -0.008 4.008 14 C -0.187 4.187 15 C -0.092 4.092 16 C -0.268 4.268 17 C -0.095 4.095 18 C -0.263 4.263 19 C 0.107 3.893 20 C -0.460 4.460 21 H 0.125 0.875 22 C -0.137 4.137 23 N -0.432 5.432 24 Si 0.740 3.260 25 H -0.198 1.198 26 H -0.223 1.223 27 H -0.172 1.172 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.028 3.047 -0.333 9.534 hybrid contribution 0.436 -0.009 -1.216 1.292 sum -8.593 3.037 -1.549 9.244 Atomic orbital electron populations 1.23243 0.76653 1.03563 1.02409 1.86556 1.23194 1.33561 1.84055 1.23914 0.92317 0.81178 0.71778 1.90653 1.67388 1.36192 1.45587 1.21475 0.86412 0.99381 1.07724 1.21996 0.89877 0.93699 0.99028 0.92701 1.22765 0.99721 0.83678 0.94664 1.87945 1.22668 1.27576 1.92346 1.22730 0.81283 1.01119 0.96499 1.22719 1.02670 0.88293 0.96441 1.62260 1.08908 1.19168 1.33711 1.20793 0.93122 1.00006 0.86921 1.19397 0.92986 1.00941 1.05396 1.20516 0.94711 0.96104 0.97853 1.20322 0.93181 1.03425 1.09841 1.20605 0.97316 0.95112 0.96481 1.21170 0.95875 1.01520 1.07774 1.17519 0.90355 0.92322 0.89128 1.19667 1.07644 0.95499 1.23173 0.87523 1.26192 0.96951 0.95962 0.94551 1.69669 1.37405 1.08272 1.27866 0.86384 0.80860 0.75859 0.82933 1.19833 1.22327 1.17150 0.88204 0.91947 0.92029 0.86437 0.86152 0.88364 0.92381 0.88987 0.92089 0.88280 0.94916 0.96247 0.89616 0.89316 0.89146 0.89141 0.88048 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.62 10.57 -39.25 -0.41 -5.03 16 3 C 0.46 6.56 7.61 36.01 0.27 6.84 16 4 O -0.51 -8.09 14.07 -18.75 -0.26 -8.35 16 5 C -0.11 -1.61 5.17 -27.88 -0.14 -1.76 16 6 C 0.06 1.00 1.69 -67.60 -0.11 0.88 16 7 H 0.06 0.92 7.80 -51.92 -0.40 0.52 16 8 C 0.07 1.07 6.02 37.21 0.22 1.30 16 9 O -0.39 -6.42 10.83 -35.23 -0.38 -6.80 16 10 C 0.06 0.93 7.01 37.21 0.26 1.19 16 11 C 0.03 0.45 5.09 -3.71 -0.02 0.43 16 12 N -0.52 -9.06 4.37 -227.77 -1.00 -10.05 16 13 C 0.12 2.18 3.92 -4.98 -0.02 2.16 16 14 C -0.19 -3.90 4.08 -103.92 -0.42 -4.32 16 15 C -0.07 -1.44 8.61 -39.66 -0.34 -1.79 16 16 C -0.25 -4.96 10.05 -39.29 -0.39 -5.36 16 17 C -0.08 -1.62 10.02 -39.66 -0.40 -2.01 16 18 C -0.24 -5.67 7.16 -38.87 -0.28 -5.95 16 19 C 0.11 2.59 5.14 -106.82 -0.55 2.05 16 20 C -0.43 -10.71 8.63 -37.74 -0.33 -11.03 16 21 H 0.11 2.75 7.18 -52.49 -0.38 2.37 16 22 C 0.08 2.03 5.46 -17.34 -0.09 1.94 16 23 N -0.81 -20.49 13.93 55.55 0.77 -19.72 16 24 Si 0.91 20.27 24.45 -169.99 -4.16 16.12 16 25 H -0.27 -5.96 6.45 56.52 0.36 -5.59 16 26 H -0.30 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.25 -5.68 6.92 56.52 0.39 -5.29 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.12 1.66 6.08 -51.93 -0.32 1.35 16 32 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.10 1.50 6.43 -51.93 -0.33 1.16 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.10 1.81 6.28 -51.93 -0.33 1.48 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 40 H 0.09 1.63 5.57 -51.93 -0.29 1.34 16 41 H 0.09 1.57 8.03 -52.48 -0.42 1.15 16 42 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 44 H 0.10 2.38 4.30 -52.49 -0.23 2.16 16 45 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 LS Contribution 354.10 15.07 5.34 5.34 Total: -1.00 -27.60 354.10 -7.90 -35.49 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.52 Total: 7.05 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.28 Total: -14.04 kcal Atomic # 7 Polarization: -29.55 SS G_CDS: -0.22 Total: -29.77 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: -1.06 Total: -20.18 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.16 Total: 16.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.60 -7.90 -35.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235524205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.496 kcal (2) G-P(sol) polarization free energy of solvation -27.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds