Wall clock time and date at job start Tue Mar 31 2020 12:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 116.99986 * 2 1 4 4 O 1.20824 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99896 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47001 * 185.79908 * 5 3 2 7 7 H 1.09009 * 109.50469 * 306.94109 * 6 5 3 8 8 C 1.53092 * 109.54668 * 67.05120 * 6 5 3 9 9 O 1.43014 * 109.26343 * 176.80525 * 8 6 5 10 10 C 1.43019 * 113.73643 * 301.33697 * 9 8 6 11 11 C 1.53098 * 109.26262 * 58.66548 * 10 9 8 12 12 N 1.47015 * 109.50465 * 186.86052 * 6 5 3 13 13 C 1.46897 * 111.00210 * 57.62791 * 12 6 5 14 14 C 1.50700 * 109.47317 * 176.46477 * 13 12 6 15 15 C 1.37635 * 120.12608 * 259.99980 * 14 13 12 16 16 C 1.38619 * 120.24664 * 179.97438 * 15 14 13 17 17 C 1.38656 * 120.50156 * 0.02562 * 16 15 14 18 18 C 1.37595 * 120.24884 * 359.97438 * 17 16 15 19 19 C 1.40692 * 120.12831 * 80.24936 * 14 13 12 20 20 C 1.41400 * 120.24574 * 0.02597 * 19 14 13 21 21 H 1.08001 * 120.00019 * 329.87882 * 20 19 14 22 22 C 1.39944 * 120.00072 * 149.87092 * 20 19 14 23 23 N 1.30823 * 119.99824 * 166.18282 * 22 20 19 24 24 Si 1.86805 * 119.99985 * 346.17959 * 22 20 19 25 25 H 1.48503 * 109.46835 * 88.94164 * 24 22 20 26 26 H 1.48495 * 109.47148 * 208.94109 * 24 22 20 27 27 H 1.48498 * 109.47270 * 328.94233 * 24 22 20 28 28 H 1.09001 * 109.46683 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47127 * 300.00520 * 1 2 3 30 30 H 1.08998 * 109.46486 * 60.00505 * 1 2 3 31 31 H 1.08994 * 109.47275 * 65.79718 * 5 3 2 32 32 H 1.09001 * 109.46724 * 305.79285 * 5 3 2 33 33 H 1.08999 * 109.50921 * 296.74207 * 8 6 5 34 34 H 1.09000 * 109.50544 * 56.82884 * 8 6 5 35 35 H 1.09006 * 109.50931 * 178.60405 * 10 9 8 36 36 H 1.09000 * 109.50353 * 298.68640 * 10 9 8 37 37 H 1.08994 * 109.50877 * 183.21982 * 11 10 9 38 38 H 1.09001 * 109.50453 * 63.08503 * 11 10 9 39 39 H 1.09001 * 109.47365 * 56.46301 * 13 12 6 40 40 H 1.09003 * 109.47245 * 296.46497 * 13 12 6 41 41 H 1.08003 * 119.88038 * 0.02562 * 15 14 13 42 42 H 1.08006 * 119.75018 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.87321 * 179.97438 * 17 16 15 44 44 H 1.08001 * 120.13028 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0005 2.7347 0.1462 7 1 3.5076 3.3387 -0.6157 8 6 3.6130 3.2482 1.5354 9 8 4.0871 4.5883 1.6923 10 6 5.5031 4.7195 1.5398 11 6 5.9098 4.2210 0.1506 12 7 5.4583 2.8319 -0.0175 13 6 5.8789 2.2955 -1.3187 14 6 7.3638 2.4908 -1.4864 15 6 7.8419 3.5365 -2.2429 16 6 9.2073 3.7188 -2.3983 17 6 10.1061 2.8519 -1.7957 18 6 9.6506 1.7997 -1.0350 19 6 8.2665 1.6019 -0.8746 20 6 7.7868 0.5206 -0.0999 21 1 6.8500 0.6099 0.4302 22 6 8.5257 -0.6652 -0.0201 23 7 8.2360 -1.5562 0.8929 24 14 9.9254 -0.9757 -1.2175 25 1 11.1850 -0.4191 -0.6616 26 1 10.0810 -2.4373 -1.4288 27 1 9.6231 -0.3176 -2.5139 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 3.9517 0.8729 -0.9364 32 1 3.9603 0.6938 0.8345 33 1 2.5282 3.2314 1.6401 34 1 4.0621 2.6110 2.2973 35 1 5.7854 5.7668 1.6477 36 1 6.0078 4.1262 2.3023 37 1 6.9943 4.2657 0.0509 38 1 5.4474 4.8487 -0.6111 39 1 5.3513 2.8197 -2.1156 40 1 5.6447 1.2320 -1.3662 41 1 7.1508 4.2181 -2.7165 42 1 9.5737 4.5423 -2.9934 43 1 11.1678 3.0032 -1.9239 44 1 10.3525 1.1255 -0.5668 45 1 8.7485 -2.3779 0.9484 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235524205.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:20 Heat of formation + Delta-G solvation = -116.468685 kcal Electronic energy + Delta-G solvation = -27962.355885 eV Core-core repulsion = 24137.241130 eV Total energy + Delta-G solvation = -3825.114754 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82075 -40.71565 -39.50797 -37.66493 -36.85208 -35.39320 -33.99780 -32.37083 -31.90014 -30.12215 -28.82657 -27.81487 -26.91282 -24.97500 -24.38151 -23.13242 -22.07153 -21.43920 -20.75338 -19.12248 -18.81328 -17.90638 -17.73656 -17.56161 -17.14817 -16.97534 -16.44104 -16.11690 -15.73106 -15.61962 -15.38296 -15.22045 -14.83749 -14.59498 -14.37753 -14.09859 -14.00006 -13.74439 -13.47409 -13.18158 -13.16843 -12.90283 -12.69094 -12.56249 -12.37137 -12.31594 -12.22003 -11.95092 -11.79858 -11.61860 -11.48501 -11.43191 -11.17075 -10.87065 -10.60853 -9.40486 -9.32677 -9.12585 -8.74945 -6.32362 0.82059 0.92289 1.07599 1.31866 1.43970 1.52244 1.65983 2.17426 2.69736 2.82411 3.01947 3.62087 3.63355 3.71777 3.92486 4.04315 4.10259 4.24450 4.26979 4.29905 4.31453 4.33584 4.43924 4.48852 4.52787 4.58306 4.64346 4.69044 4.73437 4.78591 4.84184 4.94743 4.98903 4.99990 5.09590 5.21777 5.33351 5.44386 5.69786 5.87811 6.00013 6.08028 6.08689 6.19060 6.20922 6.41039 6.59269 6.65624 6.91248 7.01470 8.30809 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012066 B = 0.004817 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.059403 B = 5811.873003 C = 7156.479993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.473 3.527 4 O -0.528 6.528 5 C -0.108 4.108 6 C 0.071 3.929 7 H 0.049 0.951 8 C 0.072 3.928 9 O -0.396 6.396 10 C 0.063 3.937 11 C 0.030 3.970 12 N -0.528 5.528 13 C 0.122 3.878 14 C -0.182 4.182 15 C -0.077 4.077 16 C -0.233 4.233 17 C -0.086 4.086 18 C -0.265 4.265 19 C 0.092 3.908 20 C -0.451 4.451 21 H 0.085 0.915 22 C 0.050 3.950 23 N -0.848 5.848 24 Si 0.957 3.043 25 H -0.269 1.269 26 H -0.288 1.288 27 H -0.258 1.258 28 H 0.130 0.870 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.093 0.907 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 4.688 -2.244 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.317 3.683 4 O -0.418 6.418 5 C -0.146 4.146 6 C -0.038 4.038 7 H 0.067 0.933 8 C -0.005 4.005 9 O -0.314 6.314 10 C -0.014 4.014 11 C -0.097 4.097 12 N -0.254 5.254 13 C -0.004 4.004 14 C -0.184 4.184 15 C -0.095 4.095 16 C -0.252 4.252 17 C -0.105 4.105 18 C -0.284 4.284 19 C 0.089 3.911 20 C -0.481 4.481 21 H 0.103 0.897 22 C -0.165 4.165 23 N -0.475 5.475 24 Si 0.784 3.216 25 H -0.195 1.195 26 H -0.216 1.216 27 H -0.182 1.182 28 H 0.148 0.852 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.134 0.866 44 H 0.110 0.890 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.169 4.584 -1.673 10.387 hybrid contribution 0.423 -0.301 -0.887 1.028 sum -8.745 4.282 -2.560 10.068 Atomic orbital electron populations 1.23581 0.74496 1.05729 1.02753 1.86537 1.25320 1.32686 1.83579 1.23678 0.91972 0.81316 0.71289 1.90642 1.67706 1.36812 1.46652 1.21373 0.87087 0.98527 1.07597 1.21925 0.88623 0.94336 0.98913 0.93317 1.22758 0.99925 0.83414 0.94414 1.87933 1.23248 1.27903 1.92336 1.22806 0.80653 1.02558 0.95351 1.22678 1.01675 0.87894 0.97501 1.62191 1.10111 1.19892 1.33172 1.20696 0.91943 0.99791 0.87938 1.19698 0.93961 1.00344 1.04387 1.20840 0.95469 0.95941 0.97282 1.20785 0.93056 1.03187 1.08176 1.20940 0.99124 0.94446 0.95952 1.21282 0.95663 1.02556 1.08882 1.17693 0.91172 0.92663 0.89609 1.19594 1.07357 0.96559 1.24615 0.89652 1.26667 0.98471 0.95851 0.95465 1.69704 1.39122 1.09150 1.29526 0.85676 0.79171 0.75863 0.80893 1.19523 1.21570 1.18224 0.85218 0.91602 0.91720 0.86375 0.86595 0.87939 0.92555 0.86299 0.92934 0.89771 0.94289 0.94795 0.90648 0.86593 0.85940 0.86585 0.88975 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.37 -9.14 10.57 -51.40 -0.54 -9.69 16 3 C 0.47 13.17 7.61 71.24 0.54 13.72 16 4 O -0.53 -16.39 14.07 21.97 0.31 -16.08 16 5 C -0.11 -3.13 5.17 29.85 0.15 -2.98 16 6 C 0.07 2.21 1.69 44.92 0.08 2.29 16 7 H 0.05 1.60 7.80 -2.38 -0.02 1.58 16 8 C 0.07 2.21 6.02 72.01 0.43 2.64 16 9 O -0.40 -12.65 10.83 -148.98 -1.61 -14.27 16 10 C 0.06 1.85 7.01 72.01 0.50 2.35 16 11 C 0.03 0.98 5.09 86.31 0.44 1.42 16 12 N -0.53 -18.40 4.37 -874.53 -3.82 -22.22 16 13 C 0.12 4.47 3.92 85.56 0.34 4.80 16 14 C -0.18 -7.46 4.08 -19.41 -0.08 -7.54 16 15 C -0.08 -2.80 8.61 22.22 0.19 -2.61 16 16 C -0.23 -8.42 10.05 22.46 0.23 -8.20 16 17 C -0.09 -3.41 10.02 22.22 0.22 -3.19 16 18 C -0.26 -12.08 7.16 22.73 0.16 -11.92 16 19 C 0.09 4.31 5.14 -21.29 -0.11 4.21 16 20 C -0.45 -23.10 8.63 23.46 0.20 -22.89 16 21 H 0.09 4.61 7.18 -2.91 -0.02 4.59 16 22 C 0.05 2.53 5.46 85.26 0.47 2.99 16 23 N -0.85 -44.57 13.93 21.83 0.30 -44.27 16 24 Si 0.96 42.31 24.45 68.60 1.68 43.99 16 25 H -0.27 -11.58 6.45 99.48 0.64 -10.94 16 26 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.26 -11.66 6.92 99.48 0.69 -10.97 16 28 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.12 3.40 6.08 -2.39 -0.01 3.38 16 32 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 33 H 0.10 3.07 6.43 -2.39 -0.02 3.05 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.12 2.83 8.14 -2.38 -0.02 2.81 16 36 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 2.96 6.28 -2.39 -0.02 2.95 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.03 1.13 8.00 -2.39 -0.02 1.11 16 40 H 0.08 2.91 5.57 -2.39 -0.01 2.89 16 41 H 0.12 3.63 8.03 -2.91 -0.02 3.61 16 42 H 0.12 3.68 8.06 -2.91 -0.02 3.66 16 43 H 0.12 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.09 4.32 4.30 -2.91 -0.01 4.31 16 45 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 Total: -1.00 -58.85 354.10 2.19 -56.66 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.91 Total: 29.09 kcal Atomic # 6 Polarization: -28.19 SS G_CDS: 4.96 Total: -23.23 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -3.52 Total: -66.49 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.85 Total: -40.03 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.68 Total: 43.99 kcal Total: -58.85 2.19 -56.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235524205.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.805 kcal (2) G-P(sol) polarization free energy of solvation -58.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds