Wall clock time and date at job start Tue Mar 31 2020 12:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99814 * 2 1 4 4 O 1.20816 * 120.00220 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99854 * 179.97438 * 3 2 1 6 6 O 1.42897 * 109.47259 * 179.97438 * 5 3 2 7 7 C 1.42900 * 114.00233 * 180.02562 * 6 5 3 8 8 H 1.09006 * 110.77996 * 328.20376 * 7 6 5 9 9 C 1.54592 * 110.72276 * 91.45557 * 7 6 5 10 10 C 1.53993 * 105.13861 * 140.31886 * 9 7 6 11 11 N 1.47902 * 107.05932 * 1.21914 * 10 9 7 12 12 C 1.46898 * 111.00044 * 214.15508 * 11 10 9 13 13 C 1.50710 * 109.47052 * 176.59797 * 12 11 10 14 14 C 1.37638 * 120.12904 * 254.23442 * 13 12 11 15 15 C 1.38613 * 120.24514 * 179.97438 * 14 13 12 16 16 C 1.38650 * 120.50287 * 359.97438 * 15 14 13 17 17 C 1.37602 * 120.25181 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12226 * 74.21145 * 13 12 11 19 19 C 1.41399 * 120.24904 * 0.02562 * 18 13 12 20 20 H 1.08004 * 119.99314 * 332.36832 * 19 18 13 21 21 C 1.39941 * 120.00151 * 152.37053 * 19 18 13 22 22 N 1.30826 * 119.99818 * 348.72628 * 21 19 18 23 23 Si 1.86795 * 120.00194 * 168.73190 * 21 19 18 24 24 H 1.48498 * 109.47176 * 59.99229 * 23 21 19 25 25 H 1.48494 * 109.47448 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47137 * 299.99608 * 23 21 19 27 27 C 1.48530 * 105.81924 * 334.67645 * 11 10 9 28 28 H 1.08995 * 109.46975 * 300.00201 * 1 2 3 29 29 H 1.09003 * 109.46632 * 60.00036 * 1 2 3 30 30 H 1.08994 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47214 * 59.99785 * 5 3 2 32 32 H 1.09003 * 109.47290 * 300.00586 * 5 3 2 33 33 H 1.08991 * 110.31371 * 21.40095 * 9 7 6 34 34 H 1.09002 * 110.39017 * 259.27154 * 9 7 6 35 35 H 1.09004 * 109.91677 * 241.87311 * 10 9 7 36 36 H 1.08996 * 110.08661 * 120.66654 * 10 9 7 37 37 H 1.09005 * 109.46744 * 56.60813 * 12 11 10 38 38 H 1.09000 * 109.47472 * 296.60099 * 12 11 10 39 39 H 1.08001 * 119.87495 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.74525 * 180.02562 * 15 14 13 41 41 H 1.08001 * 119.87768 * 180.27570 * 16 15 14 42 42 H 1.07995 * 120.12640 * 179.97438 * 17 16 15 43 43 H 0.97002 * 119.99698 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.66811 * 157.64391 * 27 11 10 45 45 H 1.09004 * 110.66654 * 280.76576 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6453 -0.0001 7 6 5.3882 2.8325 -0.0002 8 1 5.8851 2.0248 0.5372 9 6 5.9256 2.9399 -1.4457 10 6 7.0032 4.0387 -1.3936 11 7 7.0862 4.4988 0.0096 12 6 7.3902 5.9344 0.0759 13 6 7.3842 6.3833 1.5145 14 6 6.3356 7.1306 2.0007 15 6 6.3273 7.5443 3.3237 16 6 7.3724 7.2110 4.1718 17 6 8.4311 6.4648 3.7073 18 6 8.4504 6.0397 2.3658 19 6 9.5331 5.2725 1.8774 20 1 9.3823 4.5875 1.0561 21 6 10.7998 5.4007 2.4582 22 7 11.0397 6.3769 3.2955 23 14 12.1482 4.1783 2.0378 24 1 12.4168 4.2203 0.5779 25 1 13.3855 4.5318 2.7788 26 1 11.7142 2.8110 2.4220 27 6 5.7595 4.2071 0.6105 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 5.1248 3.2274 -2.1268 34 1 6.3658 1.9930 -1.7586 35 1 6.7187 4.8688 -2.0402 36 1 7.9651 3.6350 -1.7094 37 1 6.6369 6.4913 -0.4816 38 1 8.3731 6.1182 -0.3580 39 1 5.5161 7.3955 1.3490 40 1 5.5002 8.1300 3.6968 41 1 7.3535 7.5349 5.2019 42 1 9.2442 6.2067 4.3696 43 1 11.9178 6.4660 3.6978 44 1 5.8354 4.1382 1.6957 45 1 5.0316 4.9655 0.3222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235526260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:48 Heat of formation + Delta-G solvation = -97.693795 kcal Electronic energy + Delta-G solvation = -26686.410179 eV Core-core repulsion = 22862.109565 eV Total energy + Delta-G solvation = -3824.300614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67217 -39.25019 -37.77977 -36.84675 -36.20416 -33.53282 -32.07170 -29.91282 -29.43653 -28.78467 -28.21876 -26.75005 -25.41497 -24.09299 -21.52498 -21.10513 -20.79048 -20.62479 -19.34124 -17.91526 -17.32001 -17.04655 -16.96068 -16.51103 -15.77371 -15.25262 -14.95386 -14.74312 -14.44444 -13.89604 -13.77221 -13.71796 -13.39288 -13.01243 -12.75761 -12.65327 -12.52924 -12.24924 -12.14154 -11.65271 -11.52838 -11.36924 -11.21340 -11.09960 -11.07645 -10.97810 -10.74023 -10.58798 -10.47695 -10.40185 -10.27889 -9.70095 -9.45852 -9.19947 -9.12354 -7.83460 -7.30009 -7.21740 -6.62298 -4.25444 1.95360 2.09250 2.84672 3.02259 3.12041 3.15589 3.31420 3.72305 4.01409 4.48840 4.60520 4.73392 4.79570 4.80492 4.82566 4.88283 4.92753 4.99832 5.14146 5.20404 5.37200 5.70106 5.79849 5.90390 5.94692 5.99237 6.04506 6.06489 6.13286 6.25161 6.34963 6.42220 6.54594 6.59737 6.89624 6.96341 7.19222 7.34531 7.41504 7.48164 7.52675 7.62558 7.73939 7.99440 8.15994 8.23201 8.40265 8.77653 9.03003 9.09089 10.31206 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.003133 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.926828 B = 8935.056750 C = 9780.597866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.460 3.540 4 O -0.484 6.484 5 C 0.072 3.928 6 O -0.358 6.358 7 C 0.082 3.918 8 H 0.082 0.918 9 C -0.153 4.153 10 C 0.035 3.965 11 N -0.496 5.496 12 C 0.121 3.879 13 C -0.199 4.199 14 C -0.086 4.086 15 C -0.243 4.243 16 C -0.108 4.108 17 C -0.161 4.161 18 C 0.129 3.871 19 C -0.444 4.444 20 H 0.093 0.907 21 C 0.070 3.930 22 N -0.804 5.804 23 Si 0.909 3.091 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.265 1.265 27 C 0.056 3.944 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.018 0.982 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.277 0.723 44 H 0.092 0.908 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.157 -12.219 -7.472 18.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.301 3.699 4 O -0.369 6.369 5 C -0.006 4.006 6 O -0.276 6.276 7 C 0.024 3.976 8 H 0.100 0.900 9 C -0.192 4.192 10 C -0.093 4.093 11 N -0.221 5.221 12 C -0.006 4.006 13 C -0.201 4.201 14 C -0.105 4.105 15 C -0.262 4.262 16 C -0.127 4.127 17 C -0.181 4.181 18 C 0.126 3.874 19 C -0.474 4.474 20 H 0.111 0.889 21 C -0.146 4.146 22 N -0.431 5.431 23 Si 0.734 3.266 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.190 1.190 27 C -0.072 4.072 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.036 0.964 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.892 -11.911 -7.079 17.624 hybrid contribution -0.018 -0.074 -0.538 0.544 sum -10.910 -11.985 -7.617 17.908 Atomic orbital electron populations 1.23284 0.75812 1.03757 1.02786 1.86457 1.23761 1.33012 1.84593 1.23374 0.91601 0.81629 0.73305 1.90712 1.66737 1.36219 1.43236 1.21676 0.87886 0.86823 1.04210 1.87997 1.23241 1.21265 1.95142 1.23251 0.78760 0.99738 0.95819 0.89981 1.22928 0.98917 0.99854 0.97454 1.22801 0.98547 0.96520 0.91441 1.64899 1.26614 1.18549 1.12055 1.20798 0.99660 0.84912 0.95198 1.19456 0.99316 1.07288 0.94003 1.20378 0.96482 0.98776 0.94881 1.20304 1.00491 1.10464 0.94980 1.20698 0.95118 0.99554 0.97293 1.21443 0.97948 1.02334 0.96337 1.17388 0.90717 0.88988 0.90299 1.19771 0.92023 1.20314 1.15315 0.88876 1.25975 1.00244 0.94792 0.93604 1.69813 1.23208 1.26404 1.23633 0.86366 0.79319 0.81530 0.79401 1.19171 1.20756 1.18974 1.23016 0.90316 0.93168 1.00744 0.91700 0.91807 0.87898 0.88977 0.88631 0.90774 0.91037 0.94058 0.90372 0.96361 0.90358 0.89977 0.89850 0.89757 0.86230 0.91173 0.88997 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.54 10.57 -39.27 -0.41 -3.95 16 3 C 0.46 5.53 8.03 36.01 0.29 5.82 16 4 O -0.48 -7.67 16.25 -25.47 -0.41 -8.08 16 5 C 0.07 0.74 6.40 36.01 0.23 0.97 16 6 O -0.36 -5.11 9.61 -55.18 -0.53 -5.64 16 7 C 0.08 1.14 3.51 -24.87 -0.09 1.05 16 8 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 9 C -0.15 -1.90 6.69 -25.38 -0.17 -2.07 16 10 C 0.04 0.51 6.70 -2.75 -0.02 0.49 16 11 N -0.50 -9.02 4.61 -231.89 -1.07 -10.09 16 12 C 0.12 2.44 4.15 -4.97 -0.02 2.41 16 13 C -0.20 -4.64 4.49 -103.91 -0.47 -5.11 16 14 C -0.09 -1.95 9.50 -39.66 -0.38 -2.33 16 15 C -0.24 -5.57 10.05 -39.29 -0.39 -5.97 16 16 C -0.11 -2.59 10.02 -39.66 -0.40 -2.98 16 17 C -0.16 -4.20 8.67 -38.87 -0.34 -4.53 16 18 C 0.13 3.33 5.56 -106.82 -0.59 2.74 16 19 C -0.44 -11.34 8.20 -37.74 -0.31 -11.65 16 20 H 0.09 2.31 6.64 -52.48 -0.35 1.96 16 21 C 0.07 1.73 5.25 -17.34 -0.09 1.64 16 22 N -0.80 -20.73 10.79 55.55 0.60 -20.13 16 23 Si 0.91 18.74 29.57 -169.99 -5.03 13.71 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.33 16 26 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 27 C 0.06 0.97 5.36 -1.90 -0.01 0.96 16 28 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.10 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.59 7.68 -51.93 -0.40 0.19 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.35 7.78 -51.93 -0.40 -0.06 16 38 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 39 H 0.08 1.69 7.99 -52.49 -0.42 1.27 16 40 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.08 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.12 3.23 6.15 -52.49 -0.32 2.91 16 43 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 44 H 0.09 1.78 7.97 -51.93 -0.41 1.36 16 45 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 LS Contribution 373.11 15.07 5.62 5.62 Total: -1.00 -30.17 373.11 -9.81 -39.98 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.89 Total: 5.79 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -1.69 Total: -17.21 kcal Atomic # 7 Polarization: -29.75 SS G_CDS: -0.47 Total: -30.22 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -1.36 Total: -17.67 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.17 -9.81 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.716 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds