Wall clock time and date at job start Tue Mar 31 2020 12:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34234 * 116.99814 * 2 1 4 4 O 1.20816 * 120.00220 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99854 * 179.97438 * 3 2 1 6 6 O 1.42897 * 109.47259 * 179.97438 * 5 3 2 7 7 C 1.42900 * 114.00233 * 180.02562 * 6 5 3 8 8 H 1.09006 * 110.77996 * 328.20376 * 7 6 5 9 9 C 1.54592 * 110.72276 * 91.45557 * 7 6 5 10 10 C 1.53993 * 105.13861 * 140.31886 * 9 7 6 11 11 N 1.47902 * 107.05932 * 1.21914 * 10 9 7 12 12 C 1.46898 * 111.00044 * 214.15508 * 11 10 9 13 13 C 1.50710 * 109.47052 * 176.59797 * 12 11 10 14 14 C 1.37638 * 120.12904 * 254.23442 * 13 12 11 15 15 C 1.38613 * 120.24514 * 179.97438 * 14 13 12 16 16 C 1.38650 * 120.50287 * 359.97438 * 15 14 13 17 17 C 1.37602 * 120.25181 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12226 * 74.21145 * 13 12 11 19 19 C 1.41399 * 120.24904 * 0.02562 * 18 13 12 20 20 H 1.08004 * 119.99314 * 332.36832 * 19 18 13 21 21 C 1.39941 * 120.00151 * 152.37053 * 19 18 13 22 22 N 1.30826 * 119.99818 * 348.72628 * 21 19 18 23 23 Si 1.86795 * 120.00194 * 168.73190 * 21 19 18 24 24 H 1.48498 * 109.47176 * 59.99229 * 23 21 19 25 25 H 1.48494 * 109.47448 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47137 * 299.99608 * 23 21 19 27 27 C 1.48530 * 105.81924 * 334.67645 * 11 10 9 28 28 H 1.08995 * 109.46975 * 300.00201 * 1 2 3 29 29 H 1.09003 * 109.46632 * 60.00036 * 1 2 3 30 30 H 1.08994 * 109.46917 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47214 * 59.99785 * 5 3 2 32 32 H 1.09003 * 109.47290 * 300.00586 * 5 3 2 33 33 H 1.08991 * 110.31371 * 21.40095 * 9 7 6 34 34 H 1.09002 * 110.39017 * 259.27154 * 9 7 6 35 35 H 1.09004 * 109.91677 * 241.87311 * 10 9 7 36 36 H 1.08996 * 110.08661 * 120.66654 * 10 9 7 37 37 H 1.09005 * 109.46744 * 56.60813 * 12 11 10 38 38 H 1.09000 * 109.47472 * 296.60099 * 12 11 10 39 39 H 1.08001 * 119.87495 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.74525 * 180.02562 * 15 14 13 41 41 H 1.08001 * 119.87768 * 180.27570 * 16 15 14 42 42 H 1.07995 * 120.12640 * 179.97438 * 17 16 15 43 43 H 0.97002 * 119.99698 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.66811 * 157.64391 * 27 11 10 45 45 H 1.09004 * 110.66654 * 280.76576 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 8 3.9715 2.6453 -0.0001 7 6 5.3882 2.8325 -0.0002 8 1 5.8851 2.0248 0.5372 9 6 5.9256 2.9399 -1.4457 10 6 7.0032 4.0387 -1.3936 11 7 7.0862 4.4988 0.0096 12 6 7.3902 5.9344 0.0759 13 6 7.3842 6.3833 1.5145 14 6 6.3356 7.1306 2.0007 15 6 6.3273 7.5443 3.3237 16 6 7.3724 7.2110 4.1718 17 6 8.4311 6.4648 3.7073 18 6 8.4504 6.0397 2.3658 19 6 9.5331 5.2725 1.8774 20 1 9.3823 4.5875 1.0561 21 6 10.7998 5.4007 2.4582 22 7 11.0397 6.3769 3.2955 23 14 12.1482 4.1783 2.0378 24 1 12.4168 4.2203 0.5779 25 1 13.3855 4.5318 2.7788 26 1 11.7142 2.8110 2.4220 27 6 5.7595 4.2071 0.6105 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9564 0.7806 -0.8892 32 1 3.9557 0.7809 0.8908 33 1 5.1248 3.2274 -2.1268 34 1 6.3658 1.9930 -1.7586 35 1 6.7187 4.8688 -2.0402 36 1 7.9651 3.6350 -1.7094 37 1 6.6369 6.4913 -0.4816 38 1 8.3731 6.1182 -0.3580 39 1 5.5161 7.3955 1.3490 40 1 5.5002 8.1300 3.6968 41 1 7.3535 7.5349 5.2019 42 1 9.2442 6.2067 4.3696 43 1 11.9178 6.4660 3.6978 44 1 5.8354 4.1382 1.6957 45 1 5.0316 4.9655 0.3222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235526260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:47 Heat of formation + Delta-G solvation = -114.614990 kcal Electronic energy + Delta-G solvation = -26687.143937 eV Core-core repulsion = 22862.109565 eV Total energy + Delta-G solvation = -3825.034372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.56290 -40.51153 -39.32575 -37.99138 -37.28928 -35.40588 -33.54768 -31.32132 -30.93652 -30.19370 -29.28838 -27.55220 -27.20813 -25.68520 -22.80277 -22.44251 -22.27259 -21.74281 -21.06089 -18.95279 -18.81797 -18.24113 -17.79590 -17.50514 -17.17322 -16.84170 -16.26971 -15.85772 -15.81984 -15.57039 -15.20928 -14.72259 -14.57968 -14.33498 -14.24319 -14.05926 -13.72313 -13.55977 -13.29204 -13.02976 -12.93428 -12.73849 -12.70198 -12.64426 -12.39468 -12.33703 -12.17104 -12.01301 -11.86401 -11.58090 -11.44466 -11.30442 -11.02286 -10.97018 -10.67756 -9.29550 -9.17121 -9.07158 -8.47589 -6.19225 1.03498 1.06114 1.15920 1.30570 1.44227 1.54761 1.60957 2.29127 2.73140 2.87779 3.37515 3.63242 3.74546 3.76455 3.92842 4.09710 4.18604 4.19799 4.27714 4.29826 4.32173 4.37110 4.43571 4.54318 4.62388 4.69318 4.71117 4.78144 4.82853 4.87428 4.96719 5.08419 5.13070 5.20281 5.25340 5.32111 5.45460 5.58608 5.83479 5.88243 6.04784 6.17088 6.22170 6.27901 6.34767 6.51624 6.66656 6.85524 7.12180 7.18364 8.47725 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.003133 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.926828 B = 8935.056750 C = 9780.597866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.462 3.538 4 O -0.532 6.532 5 C 0.066 3.934 6 O -0.385 6.385 7 C 0.092 3.908 8 H 0.097 0.903 9 C -0.141 4.141 10 C 0.032 3.968 11 N -0.510 5.510 12 C 0.129 3.871 13 C -0.199 4.199 14 C -0.094 4.094 15 C -0.245 4.245 16 C -0.116 4.116 17 C -0.191 4.191 18 C 0.101 3.899 19 C -0.465 4.465 20 H 0.095 0.905 21 C 0.027 3.973 22 N -0.838 5.838 23 Si 0.978 3.022 24 H -0.259 1.259 25 H -0.277 1.277 26 H -0.261 1.261 27 C 0.056 3.944 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.066 0.934 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.282 0.718 44 H 0.062 0.938 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 -14.422 -9.047 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.421 6.421 5 C -0.010 4.010 6 O -0.304 6.304 7 C 0.034 3.966 8 H 0.115 0.885 9 C -0.179 4.179 10 C -0.096 4.096 11 N -0.235 5.235 12 C 0.002 3.998 13 C -0.200 4.200 14 C -0.113 4.113 15 C -0.265 4.265 16 C -0.134 4.134 17 C -0.210 4.210 18 C 0.098 3.902 19 C -0.495 4.495 20 H 0.113 0.887 21 C -0.185 4.185 22 N -0.466 5.466 23 Si 0.800 3.200 24 H -0.183 1.183 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.073 4.073 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.271 -14.139 -8.660 20.049 hybrid contribution -0.062 0.622 -0.032 0.625 sum -11.333 -13.518 -8.691 19.665 Atomic orbital electron populations 1.23588 0.74350 1.05980 1.02486 1.86459 1.25204 1.31719 1.83887 1.23787 0.92314 0.81467 0.71855 1.90696 1.67853 1.37793 1.45778 1.22000 0.86794 0.85292 1.06943 1.87945 1.23132 1.23943 1.95412 1.23074 0.79088 0.97763 0.96630 0.88493 1.22880 0.98202 1.00416 0.96400 1.22916 1.00028 0.97447 0.89176 1.64756 1.27222 1.16842 1.14689 1.20637 0.99381 0.86683 0.93135 1.19818 0.98505 1.06329 0.95386 1.20678 0.96902 0.98366 0.95308 1.20643 1.00720 1.10062 0.95034 1.20934 0.94867 0.99142 0.98494 1.21429 0.98549 1.04388 0.96665 1.17734 0.91930 0.89831 0.90708 1.19935 0.92669 1.20898 1.15976 0.88726 1.26798 1.02318 0.96192 0.93236 1.69901 1.23986 1.27936 1.24737 0.85300 0.76305 0.78958 0.79398 1.18345 1.20242 1.18532 1.22877 0.89724 0.95431 0.99242 0.92253 0.91976 0.84390 0.85537 0.86264 0.90294 0.87900 0.93759 0.89483 0.95346 0.91536 0.87875 0.87330 0.87959 0.88110 0.90803 0.91970 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.26 10.57 -51.45 -0.54 -6.81 16 3 C 0.46 10.46 8.03 71.24 0.57 11.04 16 4 O -0.53 -16.78 16.25 28.42 0.46 -16.32 16 5 C 0.07 1.20 6.40 71.24 0.46 1.65 16 6 O -0.39 -10.34 9.61 -129.90 -1.25 -11.59 16 7 C 0.09 2.37 3.51 31.80 0.11 2.49 16 8 H 0.10 2.19 7.89 -2.38 -0.02 2.17 16 9 C -0.14 -3.05 6.69 31.47 0.21 -2.84 16 10 C 0.03 0.87 6.70 86.45 0.58 1.45 16 11 N -0.51 -18.24 4.61 -887.56 -4.09 -22.33 16 12 C 0.13 5.20 4.15 85.56 0.35 5.56 16 13 C -0.20 -9.41 4.49 -19.40 -0.09 -9.50 16 14 C -0.09 -4.24 9.50 22.22 0.21 -4.02 16 15 C -0.25 -11.17 10.05 22.46 0.23 -10.94 16 16 C -0.12 -5.63 10.02 22.22 0.22 -5.41 16 17 C -0.19 -10.29 8.67 22.73 0.20 -10.10 16 18 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 19 C -0.46 -24.25 8.20 23.46 0.19 -24.06 16 20 H 0.09 4.75 6.64 -2.91 -0.02 4.73 16 21 C 0.03 1.37 5.25 85.26 0.45 1.82 16 22 N -0.84 -44.46 10.79 21.83 0.24 -44.22 16 23 Si 0.98 38.48 29.57 68.60 2.03 40.51 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.28 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 C 0.06 1.92 5.36 86.65 0.46 2.38 16 28 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 29 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.13 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.12 1.60 8.11 -2.39 -0.02 1.58 16 33 H 0.08 1.67 8.07 -2.39 -0.02 1.65 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.04 1.18 7.68 -2.38 -0.02 1.16 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.03 1.07 7.78 -2.38 -0.02 1.05 16 38 H 0.07 2.82 7.69 -2.39 -0.02 2.80 16 39 H 0.10 4.16 7.99 -2.91 -0.02 4.14 16 40 H 0.11 4.33 8.06 -2.91 -0.02 4.30 16 41 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.10 5.73 6.15 -2.91 -0.02 5.71 16 43 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 44 H 0.06 2.48 7.97 -2.39 -0.02 2.46 16 45 H 0.04 1.32 8.01 -2.39 -0.02 1.30 16 Total: -1.00 -67.77 373.11 3.05 -64.72 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.98 Total: 29.73 kcal Atomic # 6 Polarization: -38.93 SS G_CDS: 5.24 Total: -33.69 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -3.86 Total: -66.55 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -1.33 Total: -34.71 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -67.77 3.05 -64.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235526260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.897 kcal (2) G-P(sol) polarization free energy of solvation -67.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds