Wall clock time and date at job start Tue Mar 31 2020 12:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42907 * 113.99738 * 2 1 4 4 C 1.52996 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.47216 * 65.00037 * 4 3 2 6 6 C 1.37097 * 119.99639 * 264.55031 * 5 4 3 7 7 H 1.08004 * 119.99585 * 145.65431 * 6 5 4 8 8 C 1.38947 * 120.00030 * 325.64713 * 6 5 4 9 9 N 1.31405 * 120.00418 * 338.16507 * 8 6 5 10 10 Si 1.86800 * 119.99619 * 158.16348 * 8 6 5 11 11 H 1.48503 * 109.47206 * 60.00100 * 10 8 6 12 12 H 1.48504 * 109.47455 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47243 * 300.00106 * 10 8 6 14 14 C 1.34770 * 119.99697 * 84.55356 * 5 4 3 15 15 O 1.21293 * 120.00518 * 359.97438 * 14 5 4 16 16 C 1.50707 * 119.99622 * 180.02562 * 14 5 4 17 17 C 1.53003 * 109.46850 * 179.97438 * 16 14 5 18 18 C 1.50705 * 109.46893 * 179.97438 * 17 16 14 19 19 C 1.38288 * 120.11144 * 90.00243 * 18 17 16 20 20 C 1.37930 * 120.34783 * 180.17328 * 19 18 17 21 21 C 1.39288 * 120.24507 * 0.06487 * 20 19 18 22 22 C 1.38982 * 118.85821 * 359.58844 * 21 20 19 23 23 C 1.37664 * 120.77132 * 0.54924 * 22 21 20 24 24 C 1.51643 * 106.98351 * 180.57561 * 22 21 20 25 25 C 1.54703 * 101.93883 * 15.71536 * 24 22 21 26 26 O 1.36135 * 129.88177 * 179.56974 * 21 20 19 27 27 H 1.09000 * 109.47327 * 299.99551 * 1 2 3 28 28 H 1.08999 * 109.47584 * 60.00030 * 1 2 3 29 29 H 1.09002 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47004 * 59.99926 * 3 2 1 31 31 H 1.09004 * 109.47050 * 300.00272 * 3 2 1 32 32 H 1.09004 * 109.47301 * 304.99917 * 4 3 2 33 33 H 1.08999 * 109.47291 * 185.00058 * 4 3 2 34 34 H 0.97000 * 120.00262 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.46973 * 59.99787 * 16 14 5 36 36 H 1.08996 * 109.47295 * 299.99318 * 16 14 5 37 37 H 1.08998 * 109.47113 * 60.00354 * 17 16 14 38 38 H 1.09000 * 109.47469 * 300.00025 * 17 16 14 39 39 H 1.07997 * 119.82568 * 0.19880 * 19 18 17 40 40 H 1.07997 * 119.88055 * 180.02562 * 20 19 18 41 41 H 1.08007 * 119.98474 * 179.61424 * 23 22 21 42 42 H 1.08997 * 110.94625 * 257.54304 * 24 22 21 43 43 H 1.09004 * 110.93628 * 133.88817 * 24 22 21 44 44 H 1.09006 * 110.74872 * 92.94461 * 25 24 22 45 45 H 1.09002 * 110.74919 * 216.10583 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 4.2044 -0.7862 -1.3052 7 1 3.9849 -1.3364 -2.2083 8 6 4.7190 -1.4472 -0.1966 9 7 5.3775 -0.7762 0.7214 10 14 4.4744 -3.2898 -0.0113 11 1 5.0931 -3.9899 -1.1655 12 1 5.1145 -3.7501 1.2472 13 1 3.0215 -3.5945 0.0316 14 6 4.1556 1.3218 -2.3530 15 8 3.9527 2.5168 -2.3067 16 6 4.6079 0.6837 -3.6412 17 6 4.7330 1.7562 -4.7252 18 6 5.1859 1.1182 -6.0132 19 6 4.2537 0.6430 -6.9173 20 6 4.6628 0.0550 -8.0960 21 6 6.0199 -0.0665 -8.3853 22 6 6.9468 0.4216 -7.4719 23 6 6.5356 1.0055 -6.2950 24 6 8.3223 0.1650 -8.0566 25 6 7.9898 -0.1336 -9.5377 26 8 6.6358 -0.6120 -9.4699 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6884 1.8465 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0889 34 1 5.7370 -1.2377 1.4951 35 1 3.8780 -0.0636 -3.9523 36 1 5.5756 0.2054 -3.4896 37 1 5.4627 2.5038 -4.4142 38 1 3.7652 2.2343 -4.8767 39 1 3.1997 0.7331 -6.6996 40 1 3.9283 -0.3132 -8.7969 41 1 7.2671 1.3749 -5.5914 42 1 8.7931 -0.6957 -7.5818 43 1 8.9536 1.0494 -7.9697 44 1 8.0488 0.7747 -10.1375 45 1 8.6540 -0.9010 -9.9354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344517983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:02 Heat of formation + Delta-G solvation = -87.545882 kcal Electronic energy + Delta-G solvation = -26655.112331 eV Core-core repulsion = 22831.251763 eV Total energy + Delta-G solvation = -3823.860567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04335 -38.77028 -37.72567 -36.89063 -34.70727 -33.00332 -32.61547 -31.52754 -29.73724 -29.23299 -28.28695 -25.82069 -24.83431 -24.11305 -23.25660 -21.93225 -21.60132 -20.32705 -18.93760 -17.37372 -16.82923 -16.67046 -16.24965 -16.11423 -15.44910 -15.31606 -14.80312 -14.53733 -14.32788 -14.06772 -14.04238 -13.85296 -13.32326 -13.21032 -13.04254 -12.86050 -12.50362 -12.20008 -11.97457 -11.86126 -11.61160 -11.45521 -11.21755 -11.06611 -11.02105 -10.95229 -10.76529 -10.58460 -10.49762 -10.33787 -10.23808 -9.97672 -9.09628 -8.93131 -8.79570 -8.40251 -7.87922 -7.47729 -6.30076 -3.93425 1.37840 1.47335 3.20943 3.23166 3.28333 3.34046 3.76966 3.95230 4.21185 4.35596 4.50099 4.53995 4.79593 4.82323 4.92921 5.09735 5.17884 5.25910 5.31330 5.50644 5.57099 5.64714 5.68114 5.70719 5.74182 5.77943 5.91968 5.99185 6.02071 6.10015 6.15856 6.25797 6.37134 6.41790 6.45131 6.52679 6.56302 6.66781 6.80866 6.83149 6.92375 7.24558 7.32547 7.53298 7.84803 8.03392 8.43409 9.17197 9.58263 9.99753 10.72870 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.003210 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.601181 B = 8721.610210 C = 9467.798274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.113 3.887 5 N -0.428 5.428 6 C -0.323 4.323 7 H 0.087 0.913 8 C 0.049 3.951 9 N -0.864 5.864 10 Si 0.913 3.087 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.465 3.535 15 O -0.614 6.614 16 C -0.110 4.110 17 C -0.060 4.060 18 C -0.093 4.093 19 C -0.083 4.083 20 C -0.135 4.135 21 C 0.089 3.911 22 C -0.174 4.174 23 C -0.066 4.066 24 C -0.110 4.110 25 C 0.052 3.948 26 O -0.309 6.309 27 H 0.029 0.971 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.131 0.869 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 1.031 -12.572 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.025 4.025 4 C -0.011 4.011 5 N -0.145 5.145 6 C -0.450 4.450 7 H 0.105 0.895 8 C -0.156 4.156 9 N -0.501 5.501 10 Si 0.739 3.261 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.196 1.196 14 C 0.254 3.746 15 O -0.502 6.502 16 C -0.150 4.150 17 C -0.097 4.097 18 C -0.093 4.093 19 C -0.101 4.101 20 C -0.154 4.154 21 C 0.044 3.956 22 C -0.174 4.174 23 C -0.084 4.084 24 C -0.147 4.147 25 C -0.023 4.023 26 O -0.224 6.224 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.149 0.851 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.962 1.232 -12.502 12.600 hybrid contribution -0.210 -0.815 0.310 0.897 sum 0.752 0.417 -12.192 12.223 Atomic orbital electron populations 1.22638 0.83503 1.01683 0.98802 1.88139 1.17310 1.27796 1.95030 1.23039 0.96673 0.84240 0.98571 1.21473 0.89082 0.99029 0.91538 1.43359 1.56150 1.07340 1.07695 1.19262 1.42137 0.82120 1.01526 0.89497 1.25201 0.94027 0.99792 0.96617 1.69896 1.31214 1.37170 1.11869 0.86239 0.78992 0.83257 0.77575 1.20025 1.21155 1.19635 1.20424 0.81210 0.86310 0.86636 1.90503 1.58072 1.15441 1.86199 1.21309 1.03148 0.97907 0.92643 1.20310 1.02334 0.97233 0.89849 1.19988 0.92614 0.99839 0.96887 1.20823 0.99870 0.96964 0.92470 1.20198 0.91791 1.04278 0.99111 1.19542 0.93388 0.95471 0.87197 1.20701 0.94699 1.05221 0.96819 1.20232 0.95644 0.97700 0.94821 1.21774 0.95118 1.03251 0.94560 1.23774 0.81512 1.00216 0.96771 1.86787 1.25735 1.64967 1.44880 0.95204 0.95006 0.90483 0.94408 0.94103 0.86631 0.91383 0.92143 0.90441 0.89600 0.90710 0.90792 0.85092 0.85756 0.85667 0.89199 0.89212 0.90831 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.88 10.44 -35.23 -0.37 -8.24 16 3 C 0.05 1.11 6.24 37.16 0.23 1.34 16 4 C 0.11 2.71 5.29 -4.04 -0.02 2.69 16 5 N -0.43 -10.77 2.51 -114.81 -0.29 -11.06 16 6 C -0.32 -8.24 8.48 -14.93 -0.13 -8.37 16 7 H 0.09 2.15 6.98 -52.48 -0.37 1.79 16 8 C 0.05 1.25 4.93 -17.47 -0.09 1.16 16 9 N -0.86 -22.93 11.34 55.50 0.63 -22.30 16 10 Si 0.91 20.16 29.60 -169.99 -5.03 15.13 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 12 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.46 11.13 7.60 -10.99 -0.08 11.05 16 15 O -0.61 -15.73 15.65 5.55 0.09 -15.64 16 16 C -0.11 -2.18 4.34 -27.88 -0.12 -2.30 16 17 C -0.06 -1.01 4.64 -27.88 -0.13 -1.14 16 18 C -0.09 -1.40 5.14 -104.56 -0.54 -1.93 16 19 C -0.08 -1.15 9.68 -39.68 -0.38 -1.53 16 20 C -0.14 -1.81 10.06 -39.30 -0.40 -2.21 16 21 C 0.09 1.24 7.04 -38.92 -0.27 0.96 16 22 C -0.17 -2.32 6.27 -104.09 -0.65 -2.97 16 23 C -0.07 -0.94 9.69 -39.75 -0.39 -1.32 16 24 C -0.11 -1.09 7.11 -26.52 -0.19 -1.27 16 25 C 0.05 0.48 8.01 38.05 0.30 0.78 16 26 O -0.31 -4.05 11.10 -20.17 -0.22 -4.27 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.12 2.99 5.37 -51.93 -0.28 2.71 16 33 H 0.07 1.64 7.59 -51.93 -0.39 1.25 16 34 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.08 1.48 7.65 -51.93 -0.40 1.08 16 36 H 0.09 1.73 8.10 -51.93 -0.42 1.31 16 37 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 38 H 0.07 1.26 8.05 -51.93 -0.42 0.84 16 39 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -30.77 375.04 -8.18 -38.95 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.90 Total: 5.23 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.74 Total: -3.45 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.34 Total: -33.36 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.50 Total: -28.15 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.77 -8.18 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344517983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.596 kcal (2) G-P(sol) polarization free energy of solvation -30.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds