Wall clock time and date at job start Tue Mar 31 2020 12:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99693 * 2 1 4 4 H 1.09003 * 110.80554 * 26.71006 * 3 2 1 5 5 C 1.54947 * 110.74158 * 263.41799 * 3 2 1 6 6 N 1.48120 * 103.25494 * 279.04564 * 5 3 2 7 7 C 1.34773 * 127.03525 * 140.66789 * 6 5 3 8 8 O 1.21287 * 119.99745 * 180.02562 * 7 6 5 9 9 C 1.50692 * 120.00055 * 0.04493 * 7 6 5 10 10 H 1.09003 * 109.47575 * 59.99495 * 9 7 6 11 11 C 1.50704 * 109.47029 * 299.99713 * 9 7 6 12 12 H 1.07998 * 119.99987 * 125.77733 * 11 9 7 13 13 C 1.37878 * 119.99819 * 305.76631 * 11 9 7 14 14 N 1.31513 * 119.99888 * 5.11449 * 13 11 9 15 15 Si 1.86801 * 119.99826 * 185.10624 * 13 11 9 16 16 H 1.48499 * 109.46731 * 90.00701 * 15 13 11 17 17 H 1.48500 * 109.47087 * 210.00222 * 15 13 11 18 18 H 1.48491 * 109.47446 * 330.00704 * 15 13 11 19 19 C 1.50701 * 109.47450 * 179.97438 * 9 7 6 20 20 C 1.38241 * 119.99862 * 294.81051 * 19 9 7 21 21 C 1.38233 * 119.99562 * 179.76121 * 20 19 9 22 22 C 1.38234 * 120.00595 * 0.50600 * 21 20 19 23 23 C 1.38244 * 119.99578 * 359.74399 * 22 21 20 24 24 C 1.38234 * 119.99967 * 0.02562 * 23 22 21 25 25 C 1.47488 * 105.92994 * 320.70293 * 6 5 3 26 26 C 1.54008 * 107.08398 * 25.45149 * 25 6 5 27 27 H 1.08997 * 110.32570 * 239.80040 * 26 25 6 28 28 O 1.42892 * 110.32793 * 117.68990 * 26 25 6 29 29 C 1.42899 * 114.00436 * 92.83709 * 28 26 25 30 30 H 1.09000 * 109.47237 * 59.99692 * 1 2 3 31 31 H 1.08999 * 109.46974 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47107 * 299.99699 * 1 2 3 33 33 H 1.08991 * 110.66635 * 160.59868 * 5 3 2 34 34 H 1.09006 * 110.65733 * 37.47959 * 5 3 2 35 35 H 0.96999 * 119.99906 * 179.97438 * 14 13 11 36 36 H 1.07997 * 119.99963 * 359.97438 * 20 19 9 37 37 H 1.08002 * 119.99657 * 180.22536 * 21 20 19 38 38 H 1.07998 * 120.00450 * 179.72398 * 22 21 20 39 39 H 1.07994 * 119.99960 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00109 * 179.97438 * 24 23 22 41 41 H 1.08999 * 109.91667 * 266.08652 * 25 6 5 42 42 H 1.08999 * 109.91382 * 144.80983 * 25 6 5 43 43 H 1.09002 * 109.47266 * 180.02562 * 29 28 26 44 44 H 1.09004 * 109.46695 * 299.99349 * 29 28 26 45 45 H 1.08988 * 109.47506 * 59.99513 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3361 2.0294 0.4580 5 6 2.3851 1.7393 -1.4395 6 7 3.6816 1.0617 -1.6715 7 6 4.0990 0.4762 -2.8115 8 8 5.1930 -0.0452 -2.8600 9 6 3.2067 0.4699 -4.0258 10 1 2.9881 1.4960 -4.3215 11 6 1.9200 -0.2438 -3.6999 12 1 0.9727 0.2463 -3.8695 13 6 1.9522 -1.5227 -3.1855 14 7 3.1041 -2.0817 -2.8850 15 14 0.3598 -2.4611 -2.9154 16 1 0.0242 -3.2295 -4.1410 17 1 0.5242 -3.3968 -1.7740 18 1 -0.7347 -1.5032 -2.6164 19 6 3.9033 -0.2409 -5.1574 20 6 5.0548 0.2934 -5.7046 21 6 5.6965 -0.3611 -6.7393 22 6 5.1809 -1.5445 -7.2339 23 6 4.0264 -2.0762 -6.6902 24 6 3.3874 -1.4241 -5.6522 25 6 4.4220 1.1581 -0.3996 26 6 3.3769 1.2964 0.7230 27 1 3.5247 2.2304 1.2650 28 8 3.4599 0.1856 1.6181 29 6 4.3115 0.4085 2.7437 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.5008 2.8215 -1.4973 34 1 1.6370 1.3928 -2.1527 35 1 3.1268 -2.9812 -2.5227 36 1 5.4550 1.2204 -5.3214 37 1 6.5982 0.0544 -7.1644 38 1 5.6798 -2.0536 -8.0453 39 1 3.6234 -3.0005 -7.0768 40 1 2.4853 -1.8392 -5.2277 41 1 5.0707 2.0340 -0.4130 42 1 5.0148 0.2564 -0.2459 43 1 4.3210 -0.4808 3.3739 44 1 5.3235 0.6188 2.3975 45 1 3.9402 1.2572 3.3179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433959134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:43 Heat of formation + Delta-G solvation = -70.554765 kcal Electronic energy + Delta-G solvation = -28970.864076 eV Core-core repulsion = 25147.740299 eV Total energy + Delta-G solvation = -3823.123777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.54176 -38.43516 -37.09541 -36.71224 -34.77379 -33.63313 -30.82188 -29.82098 -29.60145 -28.13424 -27.09312 -26.18140 -26.00177 -23.99818 -22.60645 -21.22518 -20.62644 -20.09339 -18.39730 -17.11186 -16.91623 -16.00613 -15.54226 -15.41178 -15.03900 -14.91720 -14.77605 -14.44942 -14.14165 -13.82346 -13.73886 -13.60939 -13.25914 -12.64446 -12.35961 -12.18346 -12.09576 -11.95722 -11.68632 -11.65349 -11.37666 -11.21747 -11.06849 -10.86744 -10.76451 -10.68244 -10.56210 -10.22294 -10.01411 -9.68117 -9.40393 -9.30463 -9.11576 -8.52348 -8.20352 -7.72995 -7.49778 -7.36343 -6.05063 -4.17860 2.52906 2.63068 3.25269 3.32263 3.37494 3.84676 4.04106 4.25658 4.31039 4.48631 4.91393 4.95732 5.06247 5.21955 5.28465 5.38986 5.41349 5.55385 5.61857 5.75972 5.83487 5.85904 5.90538 5.96493 5.98021 6.05895 6.10460 6.17423 6.27145 6.39027 6.54882 6.61278 6.65816 6.80558 6.90115 7.12811 7.25458 7.36404 7.41372 7.53686 7.67350 7.77636 7.80982 7.87229 8.18688 8.31782 8.71650 8.90062 9.46146 9.80504 10.96633 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.005888 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.881803 B = 4754.389274 C = 5889.988264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.333 6.333 3 C 0.080 3.920 4 H 0.071 0.929 5 C 0.078 3.922 6 N -0.606 5.606 7 C 0.579 3.421 8 O -0.548 6.548 9 C 0.062 3.938 10 H 0.052 0.948 11 C -0.541 4.541 12 H 0.065 0.935 13 C 0.088 3.912 14 N -0.835 5.835 15 Si 0.882 3.118 16 H -0.283 1.283 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.017 4.017 20 C -0.115 4.115 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.058 4.058 25 C 0.091 3.909 26 C 0.078 3.922 27 H 0.075 0.925 28 O -0.354 6.354 29 C 0.027 3.973 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.118 0.882 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.512 8.238 5.657 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.251 6.251 3 C 0.020 3.980 4 H 0.089 0.911 5 C -0.046 4.046 6 N -0.342 5.342 7 C 0.372 3.628 8 O -0.424 6.424 9 C 0.041 3.959 10 H 0.070 0.930 11 C -0.578 4.578 12 H 0.083 0.917 13 C -0.121 4.121 14 N -0.467 5.467 15 Si 0.709 3.291 16 H -0.209 1.209 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.018 4.018 20 C -0.133 4.133 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.167 4.167 24 C -0.076 4.076 25 C -0.034 4.034 26 C 0.018 3.982 27 H 0.093 0.907 28 O -0.272 6.272 29 C -0.070 4.070 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.155 0.845 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.739 7.353 5.574 9.389 hybrid contribution -0.751 -0.320 0.577 1.000 sum -2.490 7.033 6.151 9.670 Atomic orbital electron populations 1.22767 0.82516 1.02219 0.99042 1.88205 1.17899 1.24604 1.94355 1.23335 0.92795 0.86541 0.95331 0.91115 1.23086 0.89303 0.95179 0.97076 1.48279 1.16926 1.58575 1.10428 1.20674 0.85683 0.73598 0.82886 1.90535 1.23671 1.44198 1.83989 1.17847 0.94217 0.95799 0.88016 0.93005 1.20528 0.90461 0.99957 1.46852 0.91693 1.24874 0.95702 0.97560 0.93978 1.70012 1.23653 1.14784 1.38242 0.86785 0.84209 0.80282 0.77793 1.20941 1.21031 1.19546 1.19871 0.93049 0.94713 0.94155 1.20883 0.95990 0.99930 0.96531 1.20767 0.99757 0.96702 0.98881 1.20788 0.97504 0.96991 1.00908 1.21072 0.96941 0.99861 0.98813 1.21433 1.00023 0.93514 0.92597 1.22232 0.94609 1.01470 0.85065 1.23318 0.95129 0.89306 0.90399 0.90686 1.88179 1.66621 1.37574 1.34785 1.22797 0.93900 1.01335 0.88940 0.93841 0.90524 0.95056 0.92335 0.86433 0.92361 0.88146 0.88035 0.88136 0.88001 0.84539 0.93001 0.90254 0.89920 0.94235 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.85 101.05 1.10 1.60 16 2 O -0.33 -6.58 9.77 -55.22 -0.54 -7.12 16 3 C 0.08 1.30 3.50 -24.85 -0.09 1.21 16 4 H 0.07 0.90 7.83 -51.93 -0.41 0.49 16 5 C 0.08 1.36 6.48 -2.12 -0.01 1.35 16 6 N -0.61 -12.98 3.28 -169.76 -0.56 -13.53 16 7 C 0.58 14.49 5.46 -10.99 -0.06 14.43 16 8 O -0.55 -15.63 15.50 5.55 0.09 -15.55 16 9 C 0.06 1.50 2.21 -94.08 -0.21 1.29 16 10 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 11 C -0.54 -13.19 5.44 -34.44 -0.19 -13.38 16 12 H 0.06 1.53 7.69 -52.49 -0.40 1.12 16 13 C 0.09 2.23 3.19 -17.82 -0.06 2.17 16 14 N -0.83 -23.33 10.42 55.43 0.58 -22.75 16 15 Si 0.88 20.22 29.54 -169.99 -5.02 15.20 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 C -0.02 -0.41 4.50 -104.62 -0.47 -0.88 16 20 C -0.12 -2.60 8.75 -39.58 -0.35 -2.95 16 21 C -0.14 -2.93 10.05 -39.58 -0.40 -3.32 16 22 C -0.14 -2.89 10.05 -39.58 -0.40 -3.28 16 23 C -0.15 -3.22 10.05 -39.58 -0.40 -3.61 16 24 C -0.06 -1.40 8.01 -39.58 -0.32 -1.72 16 25 C 0.09 1.70 6.77 -2.98 -0.02 1.68 16 26 C 0.08 1.23 3.41 -25.35 -0.09 1.14 16 27 H 0.08 0.90 7.83 -51.93 -0.41 0.49 16 28 O -0.35 -6.16 9.63 -55.22 -0.53 -6.69 16 29 C 0.03 0.34 10.86 101.05 1.10 1.44 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.12 2.26 5.49 -51.93 -0.29 1.98 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 40 H 0.14 3.49 4.97 -52.49 -0.26 3.23 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.75 7.87 -51.93 -0.41 1.34 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.04 0.36 8.10 -51.94 -0.42 -0.06 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -32.77 364.47 -8.15 -40.92 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.80 Total: 6.87 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.85 Total: -2.83 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.02 Total: -36.28 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.99 Total: -29.36 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.77 -8.15 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433959134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.637 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds