Wall clock time and date at job start Tue Mar 31 2020 12:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00515 * 2 1 4 4 H 1.09004 * 110.28540 * 30.68252 * 3 2 1 5 5 C 1.54004 * 110.32813 * 268.54931 * 3 2 1 6 6 N 1.47488 * 107.24322 * 242.31565 * 5 3 2 7 7 C 1.34776 * 127.03376 * 154.61625 * 6 5 3 8 8 O 1.21281 * 119.99757 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00406 * 180.02562 * 7 6 5 10 10 H 1.09006 * 109.46667 * 300.00136 * 9 7 6 11 11 C 1.50698 * 109.47081 * 59.99527 * 9 7 6 12 12 H 1.07995 * 119.99942 * 25.46471 * 11 9 7 13 13 C 1.37871 * 119.99911 * 205.46474 * 11 9 7 14 14 N 1.31520 * 120.00531 * 6.08514 * 13 11 9 15 15 Si 1.86800 * 120.00244 * 186.08313 * 13 11 9 16 16 H 1.48504 * 109.47241 * 59.99850 * 15 13 11 17 17 H 1.48502 * 109.47507 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47076 * 300.00179 * 15 13 11 19 19 C 1.50702 * 109.47377 * 179.97438 * 9 7 6 20 20 C 1.38232 * 119.99871 * 293.48553 * 19 9 7 21 21 C 1.38237 * 119.99776 * 179.76340 * 20 19 9 22 22 C 1.38232 * 119.99869 * 0.51129 * 21 20 19 23 23 C 1.38237 * 120.00395 * 359.73819 * 22 21 20 24 24 C 1.38235 * 119.99888 * 113.75570 * 19 9 7 25 25 C 1.48386 * 105.79869 * 334.78209 * 6 5 3 26 26 C 1.54618 * 110.32576 * 152.92363 * 3 2 1 27 27 H 1.08995 * 110.74243 * 259.08062 * 26 3 2 28 28 O 1.42902 * 110.73863 * 22.22896 * 26 3 2 29 29 C 1.42899 * 113.99527 * 209.99610 * 28 26 3 30 30 H 1.09001 * 109.47054 * 300.00132 * 1 2 3 31 31 H 1.09010 * 109.46949 * 59.99235 * 1 2 3 32 32 H 1.08990 * 109.47829 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.91392 * 1.77133 * 5 3 2 34 34 H 1.08994 * 109.91478 * 122.86139 * 5 3 2 35 35 H 0.97001 * 120.00525 * 180.02562 * 14 13 11 36 36 H 1.07997 * 119.99919 * 0.02562 * 20 19 9 37 37 H 1.08000 * 119.99852 * 180.22658 * 21 20 19 38 38 H 1.08004 * 119.99872 * 179.72245 * 22 21 20 39 39 H 1.07991 * 120.00332 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.00263 * 0.02562 * 24 19 9 41 41 H 1.08995 * 110.51706 * 280.62997 * 25 6 5 42 42 H 1.09002 * 110.69229 * 157.58844 * 25 6 5 43 43 H 1.08999 * 109.47397 * 60.00232 * 29 28 26 44 44 H 1.09003 * 109.46690 * 179.97438 * 29 28 26 45 45 H 1.08999 * 109.47681 * 299.99852 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3608 2.0083 0.5217 5 6 2.2613 1.7793 -1.4437 6 7 3.7161 1.9694 -1.5946 7 6 4.4282 1.9099 -2.7373 8 8 3.8696 1.6780 -3.7886 9 6 5.9188 2.1303 -2.7087 10 1 6.1314 3.1253 -2.3174 11 6 6.5629 1.0944 -1.8239 12 1 6.0776 0.1427 -1.6652 13 6 7.7716 1.3616 -1.2170 14 7 8.3045 2.5602 -1.3119 15 14 8.6526 0.0211 -0.2597 16 1 8.9494 -1.1192 -1.1636 17 1 9.9226 0.5590 0.2909 18 1 7.7866 -0.4425 0.8541 19 6 6.4712 2.0107 -4.1057 20 6 6.4421 0.7926 -4.7585 21 6 6.9444 0.6840 -6.0418 22 6 7.4854 1.7911 -6.6682 23 6 7.5193 3.0081 -6.0135 24 6 7.0122 3.1179 -4.7322 25 6 4.2326 2.2354 -0.2292 26 6 3.4081 1.2708 0.6600 27 1 3.3601 1.6372 1.6854 28 8 3.9534 -0.0495 0.6214 29 6 4.8291 -0.3486 1.7103 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 1.9104 1.0252 -2.1482 34 1 1.7434 2.7219 -1.6204 35 1 9.1551 2.7481 -0.8851 36 1 6.0231 -0.0732 -4.2675 37 1 6.9183 -0.2669 -6.5532 38 1 7.8820 1.7052 -7.6692 39 1 7.9423 3.8729 -6.5027 40 1 7.0393 4.0686 -4.2203 41 1 4.0483 3.2717 0.0538 42 1 5.2955 2.0018 -0.1673 43 1 4.2860 -0.2523 2.6504 44 1 5.2003 -1.3684 1.6084 45 1 5.6687 0.3464 1.7029 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433959138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:48 Heat of formation + Delta-G solvation = -85.380570 kcal Electronic energy + Delta-G solvation = -28362.210044 eV Core-core repulsion = 24538.443371 eV Total energy + Delta-G solvation = -3823.766672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.77307 -38.56166 -37.39961 -36.87481 -35.06406 -33.64214 -31.04090 -30.07000 -29.87304 -28.27690 -27.21916 -26.32384 -26.09504 -24.07803 -22.74375 -21.51967 -20.83828 -20.30319 -18.53464 -17.21849 -16.78668 -16.34286 -15.87060 -15.63393 -15.23966 -14.98153 -14.94322 -14.56059 -14.27853 -14.12442 -13.91166 -13.70750 -13.34815 -12.72675 -12.46077 -12.38382 -12.22406 -12.08516 -11.91298 -11.61411 -11.55448 -11.40484 -11.24881 -11.07202 -10.93002 -10.89165 -10.64530 -10.34966 -10.22628 -9.96971 -9.59036 -9.40197 -9.28017 -8.69989 -8.53464 -7.89794 -7.86350 -7.55487 -6.23844 -4.26078 2.43966 2.46376 3.20177 3.27864 3.31518 3.63539 3.69476 3.91935 4.10563 4.31238 4.73411 4.79355 4.89918 5.11877 5.15891 5.27100 5.30790 5.42310 5.54035 5.64959 5.75894 5.77155 5.81386 5.81974 5.85491 5.92561 6.00730 6.05379 6.10944 6.22991 6.29909 6.54845 6.55808 6.65106 6.91890 6.97787 7.08203 7.21854 7.23152 7.42867 7.51095 7.64185 7.70399 7.81172 8.01598 8.12359 8.39377 8.77242 9.24002 9.35948 10.84438 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.005687 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.609839 B = 4922.647616 C = 6432.530271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.356 6.356 3 C 0.077 3.923 4 H 0.080 0.920 5 C 0.084 3.916 6 N -0.605 5.605 7 C 0.550 3.450 8 O -0.565 6.565 9 C 0.058 3.942 10 H 0.083 0.917 11 C -0.505 4.505 12 H 0.067 0.933 13 C 0.074 3.926 14 N -0.879 5.879 15 Si 0.890 3.110 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.270 1.270 19 C -0.009 4.009 20 C -0.083 4.083 21 C -0.135 4.135 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.116 4.116 25 C 0.073 3.927 26 C 0.079 3.921 27 H 0.077 0.923 28 O -0.345 6.345 29 C 0.031 3.969 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.266 0.734 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.131 0.869 43 H 0.032 0.968 44 H 0.081 0.919 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 0.332 5.531 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.274 6.274 3 C 0.018 3.982 4 H 0.098 0.902 5 C -0.040 4.040 6 N -0.340 5.340 7 C 0.343 3.657 8 O -0.444 6.444 9 C 0.037 3.963 10 H 0.101 0.899 11 C -0.542 4.542 12 H 0.085 0.915 13 C -0.130 4.130 14 N -0.515 5.515 15 Si 0.717 3.283 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.196 1.196 19 C -0.010 4.010 20 C -0.101 4.101 21 C -0.153 4.153 22 C -0.167 4.167 23 C -0.151 4.151 24 C -0.134 4.134 25 C -0.051 4.051 26 C 0.020 3.980 27 H 0.095 0.905 28 O -0.263 6.263 29 C -0.066 4.066 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.085 0.915 42 H 0.149 0.851 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.971 0.019 4.776 10.164 hybrid contribution 0.489 -0.281 0.811 0.988 sum -8.482 -0.262 5.588 10.160 Atomic orbital electron populations 1.22823 0.82039 1.02641 0.99592 1.88154 1.18499 1.26016 1.94698 1.23335 0.93840 0.85557 0.95489 0.90190 1.22363 0.84436 1.00472 0.96702 1.48443 1.06110 1.71876 1.07534 1.21309 0.90230 0.73591 0.80620 1.90589 1.73116 1.50494 1.30220 1.18057 0.85394 1.01576 0.91281 0.89891 1.20657 1.05331 1.00709 1.27531 0.91471 1.24917 0.96977 0.95322 0.95814 1.69901 1.18628 1.19578 1.43393 0.86685 0.78956 0.82324 0.80299 1.19959 1.21324 1.19566 1.20003 0.94232 0.92131 0.94648 1.20849 0.97865 0.97757 0.93638 1.20949 1.00814 0.97750 0.95835 1.20788 1.02971 0.93623 0.99300 1.20882 1.01687 0.96973 0.95603 1.20961 0.99718 0.98420 0.94312 1.23328 1.03652 0.96693 0.81383 1.23347 0.91256 0.85554 0.97883 0.90534 1.88086 1.62822 1.28718 1.46627 1.22819 0.93286 1.01758 0.88699 0.94376 0.94144 0.89770 0.90157 0.92228 0.92404 0.87036 0.87638 0.87783 0.87640 0.87110 0.91467 0.85107 0.94930 0.90067 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.86 101.05 1.10 1.37 16 2 O -0.36 -5.43 9.61 -55.29 -0.53 -5.96 16 3 C 0.08 1.09 3.41 -25.36 -0.09 1.00 16 4 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 5 C 0.08 1.42 6.76 -2.98 -0.02 1.40 16 6 N -0.61 -12.15 3.29 -169.54 -0.56 -12.71 16 7 C 0.55 13.00 7.13 -10.99 -0.08 12.92 16 8 O -0.57 -14.66 15.77 5.56 0.09 -14.57 16 9 C 0.06 1.40 1.86 -94.08 -0.17 1.23 16 10 H 0.08 2.11 7.26 -51.93 -0.38 1.73 16 11 C -0.50 -12.60 5.21 -34.44 -0.18 -12.78 16 12 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 13 C 0.07 1.85 5.41 -17.82 -0.10 1.75 16 14 N -0.88 -22.76 12.91 55.43 0.72 -22.04 16 15 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 C -0.01 -0.22 4.29 -104.62 -0.45 -0.67 16 20 C -0.08 -1.95 8.33 -39.58 -0.33 -2.28 16 21 C -0.14 -2.80 10.05 -39.58 -0.40 -3.19 16 22 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.13 -2.66 10.05 -39.58 -0.40 -3.06 16 24 C -0.12 -2.60 9.67 -39.58 -0.38 -2.99 16 25 C 0.07 1.27 6.50 -1.97 -0.01 1.25 16 26 C 0.08 1.21 3.50 -24.85 -0.09 1.13 16 27 H 0.08 0.93 7.82 -51.93 -0.41 0.52 16 28 O -0.35 -6.26 9.77 -55.29 -0.54 -6.80 16 29 C 0.03 0.47 10.85 101.05 1.10 1.57 16 30 H 0.04 0.33 8.10 -51.93 -0.42 -0.09 16 31 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.11 2.70 7.88 -52.49 -0.41 2.28 16 37 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.11 2.39 7.96 -52.48 -0.42 1.97 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.13 2.67 5.56 -51.93 -0.29 2.38 16 43 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -30.92 373.71 -8.02 -38.95 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.91 Total: 7.38 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -0.90 Total: -4.63 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.16 Total: -34.75 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.98 Total: -27.33 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.92 -8.02 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433959138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.433 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds