Wall clock time and date at job start Tue Mar 31 2020 12:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00260 * 2 1 4 4 H 1.09003 * 109.52384 * 330.12830 * 3 2 1 5 5 C 1.53118 * 109.52373 * 90.31898 * 3 2 1 6 6 C 1.53032 * 109.27941 * 177.55968 * 5 3 2 7 7 N 1.46841 * 109.52727 * 300.82059 * 6 5 3 8 8 C 1.46898 * 111.00551 * 185.84088 * 7 6 5 9 9 C 1.50694 * 109.47204 * 51.16086 * 8 7 6 10 10 C 1.38643 * 119.74571 * 90.00229 * 9 8 7 11 11 C 1.37623 * 120.24690 * 179.97438 * 10 9 8 12 12 C 1.40713 * 119.74285 * 0.02562 * 11 10 9 13 13 C 1.41404 * 120.23948 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99876 * 332.55215 * 13 12 11 15 15 C 1.39948 * 119.99628 * 152.55517 * 13 12 11 16 16 N 1.30819 * 119.99901 * 163.85737 * 15 13 12 17 17 Si 1.86804 * 120.00033 * 343.84846 * 15 13 12 18 18 H 1.48498 * 109.46713 * 95.06470 * 17 15 13 19 19 H 1.48500 * 109.46838 * 215.06183 * 17 15 13 20 20 H 1.48495 * 109.47121 * 335.06261 * 17 15 13 21 21 C 1.40712 * 119.51593 * 359.97438 * 12 11 10 22 22 C 1.37618 * 119.74323 * 359.97438 * 21 12 11 23 23 C 1.46851 * 111.19629 * 61.74014 * 7 6 5 24 24 H 1.09000 * 109.46196 * 58.28053 * 23 7 6 25 25 C 1.50704 * 109.46009 * 178.25522 * 23 7 6 26 26 O 1.20824 * 120.00112 * 27.44478 * 25 23 7 27 27 O 1.34233 * 119.99624 * 207.44240 * 25 23 7 28 28 C 1.53038 * 109.52322 * 298.25887 * 23 7 6 29 29 H 1.08995 * 109.47159 * 59.99864 * 1 2 3 30 30 H 1.09005 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46916 * 300.00045 * 1 2 3 32 32 H 1.08998 * 109.50052 * 297.50008 * 5 3 2 33 33 H 1.09003 * 109.50161 * 57.61714 * 5 3 2 34 34 H 1.09004 * 109.46109 * 180.80511 * 6 5 3 35 35 H 1.09001 * 109.46406 * 60.83641 * 6 5 3 36 36 H 1.09007 * 109.46947 * 291.16577 * 8 7 6 37 37 H 1.08995 * 109.47319 * 171.16832 * 8 7 6 38 38 H 1.07993 * 119.87605 * 0.28163 * 10 9 8 39 39 H 1.07999 * 120.12461 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99883 * 179.97438 * 16 15 13 41 41 H 1.08003 * 120.12850 * 179.97438 * 21 12 11 42 42 H 1.08000 * 119.87364 * 179.97438 * 22 21 12 43 43 H 0.96703 * 116.99663 * 179.97438 * 27 25 23 44 44 H 1.09001 * 109.50018 * 179.12104 * 28 23 7 45 45 H 1.09000 * 109.50577 * 299.23706 * 28 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3446 2.0006 -0.5117 5 6 2.2257 1.7696 1.4431 6 6 2.9039 3.1414 1.4367 7 7 4.1910 3.0494 0.7359 8 6 4.9333 4.3136 0.8299 9 6 5.0055 4.7477 2.2711 10 6 6.0658 4.3328 3.0622 11 6 6.1423 4.7236 4.3796 12 6 5.1388 5.5469 4.9229 13 6 5.2067 5.9543 6.2753 14 1 5.7172 5.3375 7.0000 15 6 4.6122 7.1567 6.6745 16 7 4.3926 7.3881 7.9432 17 14 4.1326 8.4312 5.3958 18 1 2.7027 8.2566 5.0351 19 1 4.3402 9.7925 5.9517 20 1 4.9735 8.2577 4.1843 21 6 4.0674 5.9619 4.1106 22 6 4.0119 5.5598 2.7957 23 6 4.0053 2.6511 -0.6653 24 1 3.3596 3.3728 -1.1656 25 6 5.3435 2.6104 -1.3572 26 8 6.3464 2.3894 -0.7206 27 8 5.4212 2.8197 -2.6809 28 6 3.3601 1.2645 -0.7216 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2633 1.8418 1.9497 33 1 2.8596 1.0527 1.9652 34 1 3.0717 3.4684 2.4629 35 1 2.2633 3.8609 0.9266 36 1 4.4229 5.0789 0.2450 37 1 5.9420 4.1723 0.4419 38 1 6.8371 3.7047 2.6418 39 1 6.9693 4.3996 4.9939 40 1 3.9809 8.2217 8.2199 41 1 3.2916 6.5936 4.5175 42 1 3.1903 5.8767 2.1704 43 1 6.3014 2.7842 -3.0800 44 1 3.2082 0.9758 -1.7617 45 1 4.0118 0.5397 -0.2337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606757256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:28 Heat of formation + Delta-G solvation = -110.572804 kcal Electronic energy + Delta-G solvation = -27363.357546 eV Core-core repulsion = 23538.498457 eV Total energy + Delta-G solvation = -3824.859090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.82308 -39.16688 -38.15555 -36.97248 -36.05897 -33.97834 -32.72595 -31.47068 -30.35754 -29.71007 -27.50822 -26.31150 -24.94197 -24.09799 -22.51656 -21.50504 -21.34540 -19.99398 -19.80392 -18.21872 -17.42456 -17.24243 -16.34557 -16.09629 -15.74900 -15.47637 -15.19443 -15.00286 -14.83353 -14.27950 -13.91869 -13.75921 -13.54320 -13.37460 -13.06248 -12.84709 -12.70569 -12.33361 -12.17268 -11.95528 -11.89626 -11.56969 -11.48204 -11.32490 -11.09748 -10.94771 -10.82297 -10.76197 -10.60485 -10.39059 -10.17066 -9.80050 -9.61742 -9.54431 -9.14185 -8.23895 -7.68727 -7.52946 -6.97761 -4.50386 2.08632 2.48496 2.71207 2.75238 3.06737 3.19496 3.29455 3.56090 3.93857 3.95916 4.52574 4.57592 4.72229 4.81796 4.94910 5.02430 5.11646 5.14854 5.21980 5.28006 5.42200 5.42993 5.47042 5.58386 5.63116 5.72678 5.83533 5.94186 6.01047 6.09437 6.19446 6.24106 6.30327 6.39906 6.55597 6.82588 6.89706 6.99963 7.09463 7.13465 7.17116 7.42192 7.58128 7.81718 7.84324 7.87170 8.13220 8.33306 8.64777 8.78021 10.04583 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003611 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.257911 B = 7751.651401 C = 8802.339795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.093 3.907 4 H 0.060 0.940 5 C -0.140 4.140 6 C 0.059 3.941 7 N -0.513 5.513 8 C 0.110 3.890 9 C -0.216 4.216 10 C -0.053 4.053 11 C -0.213 4.213 12 C 0.096 3.904 13 C -0.443 4.443 14 H 0.090 0.910 15 C 0.082 3.918 16 N -0.808 5.808 17 Si 0.916 3.084 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.243 1.243 21 C -0.242 4.242 22 C -0.069 4.069 23 C 0.100 3.900 24 H 0.070 0.930 25 C 0.481 3.519 26 O -0.484 6.484 27 O -0.521 6.521 28 C -0.102 4.102 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.030 0.970 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.285 0.715 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.409 0.591 44 H 0.079 0.921 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.283 -8.090 -18.312 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.035 3.965 4 H 0.078 0.922 5 C -0.178 4.178 6 C -0.068 4.068 7 N -0.240 5.240 8 C -0.016 4.016 9 C -0.218 4.218 10 C -0.071 4.071 11 C -0.232 4.232 12 C 0.093 3.907 13 C -0.471 4.471 14 H 0.108 0.892 15 C -0.137 4.137 16 N -0.433 5.433 17 Si 0.744 3.256 18 H -0.199 1.199 19 H -0.222 1.222 20 H -0.166 1.166 21 C -0.261 4.261 22 C -0.087 4.087 23 C -0.010 4.010 24 H 0.087 0.913 25 C 0.321 3.679 26 O -0.369 6.369 27 O -0.333 6.333 28 C -0.140 4.140 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.048 0.952 36 H 0.042 0.958 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.268 0.732 44 H 0.098 0.902 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.055 -8.531 -17.472 20.365 hybrid contribution -0.423 1.499 -0.971 1.835 sum -6.478 -7.033 -18.443 20.774 Atomic orbital electron populations 1.22783 0.81110 1.02661 0.99998 1.87905 1.19573 1.27602 1.95096 1.22123 0.93727 0.84506 0.96111 0.92187 1.22150 1.01171 0.98022 0.96445 1.22182 0.87735 0.95272 1.01626 1.61969 1.19796 1.33706 1.08524 1.20955 0.97930 0.87030 0.95670 1.18747 1.00123 1.08659 0.94267 1.20499 0.96206 0.96675 0.93768 1.20996 1.00110 1.07257 0.94855 1.17745 0.89734 0.90537 0.92655 1.19573 1.29471 1.04891 0.93181 0.89164 1.26199 0.91693 0.99664 0.96113 1.69682 1.31166 1.25125 1.17278 0.86259 0.79818 0.77671 0.81855 1.19910 1.22166 1.16580 1.20919 1.00766 1.09302 0.95154 1.20421 0.96497 0.97015 0.94803 1.21068 0.90230 0.99027 0.90702 0.91251 1.23189 0.91967 0.72828 0.79939 1.90749 1.37735 1.42607 1.65807 1.84525 1.40160 1.84133 1.24524 1.21545 0.96049 0.94968 1.01484 0.94185 0.89687 0.93859 0.91162 0.89726 0.87394 0.95151 0.95771 0.90242 0.88527 0.88227 0.90427 0.88463 0.89379 0.73184 0.90207 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.35 10.35 -35.23 -0.36 -4.71 16 3 C 0.09 1.02 2.68 -26.61 -0.07 0.95 16 4 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 5 C -0.14 -1.73 5.72 -26.65 -0.15 -1.89 16 6 C 0.06 0.84 4.75 -3.84 -0.02 0.82 16 7 N -0.51 -7.79 4.36 -229.52 -1.00 -8.79 16 8 C 0.11 1.85 4.72 -4.98 -0.02 1.83 16 9 C -0.22 -4.33 4.38 -104.33 -0.46 -4.79 16 10 C -0.05 -1.13 9.67 -39.66 -0.38 -1.51 16 11 C -0.21 -4.99 9.80 -38.87 -0.38 -5.37 16 12 C 0.10 2.43 5.19 -106.82 -0.55 1.87 16 13 C -0.44 -11.95 9.60 -37.74 -0.36 -12.32 16 14 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 15 C 0.08 2.15 5.44 -17.34 -0.09 2.05 16 16 N -0.81 -21.50 13.93 55.55 0.77 -20.73 16 17 Si 0.92 20.79 24.40 -169.99 -4.15 16.65 16 18 H -0.27 -5.98 6.70 56.52 0.38 -5.60 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.24 -5.64 6.66 56.52 0.38 -5.27 16 21 C -0.24 -5.71 7.05 -38.87 -0.27 -5.98 16 22 C -0.07 -1.42 7.70 -39.66 -0.31 -1.73 16 23 C 0.10 1.24 2.34 -68.87 -0.16 1.08 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 C 0.48 6.14 6.56 36.01 0.24 6.38 16 26 O -0.48 -7.83 15.79 -18.75 -0.30 -8.12 16 27 O -0.52 -4.89 13.42 -39.27 -0.53 -5.41 16 28 C -0.10 -1.15 5.01 -26.65 -0.13 -1.28 16 29 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.33 7.96 -51.93 -0.41 -0.08 16 32 H 0.07 0.79 7.96 -51.93 -0.41 0.37 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.11 1.84 5.60 -51.93 -0.29 1.55 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.02 0.38 8.07 -51.93 -0.42 -0.04 16 37 H 0.08 1.40 6.01 -51.93 -0.31 1.09 16 38 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.29 6.86 8.30 -40.82 -0.34 6.52 16 41 H 0.10 2.30 4.25 -52.48 -0.22 2.07 16 42 H 0.09 1.61 8.04 -52.49 -0.42 1.19 16 43 H 0.41 2.12 9.10 45.56 0.41 2.53 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -30.05 358.32 -8.09 -38.14 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.89 Total: 6.11 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.04 Total: -18.54 kcal Atomic # 7 Polarization: -29.29 SS G_CDS: -0.23 Total: -29.51 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.19 Total: -18.25 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.15 Total: 16.65 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.05 -8.09 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606757256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.428 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds