Wall clock time and date at job start Tue Mar 31 2020 12:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00260 * 2 1 4 4 H 1.09003 * 109.52384 * 330.12830 * 3 2 1 5 5 C 1.53118 * 109.52373 * 90.31898 * 3 2 1 6 6 C 1.53032 * 109.27941 * 177.55968 * 5 3 2 7 7 N 1.46841 * 109.52727 * 300.82059 * 6 5 3 8 8 C 1.46898 * 111.00551 * 185.84088 * 7 6 5 9 9 C 1.50694 * 109.47204 * 51.16086 * 8 7 6 10 10 C 1.38643 * 119.74571 * 90.00229 * 9 8 7 11 11 C 1.37623 * 120.24690 * 179.97438 * 10 9 8 12 12 C 1.40713 * 119.74285 * 0.02562 * 11 10 9 13 13 C 1.41404 * 120.23948 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99876 * 332.55215 * 13 12 11 15 15 C 1.39948 * 119.99628 * 152.55517 * 13 12 11 16 16 N 1.30819 * 119.99901 * 163.85737 * 15 13 12 17 17 Si 1.86804 * 120.00033 * 343.84846 * 15 13 12 18 18 H 1.48498 * 109.46713 * 95.06470 * 17 15 13 19 19 H 1.48500 * 109.46838 * 215.06183 * 17 15 13 20 20 H 1.48495 * 109.47121 * 335.06261 * 17 15 13 21 21 C 1.40712 * 119.51593 * 359.97438 * 12 11 10 22 22 C 1.37618 * 119.74323 * 359.97438 * 21 12 11 23 23 C 1.46851 * 111.19629 * 61.74014 * 7 6 5 24 24 H 1.09000 * 109.46196 * 58.28053 * 23 7 6 25 25 C 1.50704 * 109.46009 * 178.25522 * 23 7 6 26 26 O 1.20824 * 120.00112 * 27.44478 * 25 23 7 27 27 O 1.34233 * 119.99624 * 207.44240 * 25 23 7 28 28 C 1.53038 * 109.52322 * 298.25887 * 23 7 6 29 29 H 1.08995 * 109.47159 * 59.99864 * 1 2 3 30 30 H 1.09005 * 109.47144 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46916 * 300.00045 * 1 2 3 32 32 H 1.08998 * 109.50052 * 297.50008 * 5 3 2 33 33 H 1.09003 * 109.50161 * 57.61714 * 5 3 2 34 34 H 1.09004 * 109.46109 * 180.80511 * 6 5 3 35 35 H 1.09001 * 109.46406 * 60.83641 * 6 5 3 36 36 H 1.09007 * 109.46947 * 291.16577 * 8 7 6 37 37 H 1.08995 * 109.47319 * 171.16832 * 8 7 6 38 38 H 1.07993 * 119.87605 * 0.28163 * 10 9 8 39 39 H 1.07999 * 120.12461 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99883 * 179.97438 * 16 15 13 41 41 H 1.08003 * 120.12850 * 179.97438 * 21 12 11 42 42 H 1.08000 * 119.87364 * 179.97438 * 22 21 12 43 43 H 0.96703 * 116.99663 * 179.97438 * 27 25 23 44 44 H 1.09001 * 109.50018 * 179.12104 * 28 23 7 45 45 H 1.09000 * 109.50577 * 299.23706 * 28 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3446 2.0006 -0.5117 5 6 2.2257 1.7696 1.4431 6 6 2.9039 3.1414 1.4367 7 7 4.1910 3.0494 0.7359 8 6 4.9333 4.3136 0.8299 9 6 5.0055 4.7477 2.2711 10 6 6.0658 4.3328 3.0622 11 6 6.1423 4.7236 4.3796 12 6 5.1388 5.5469 4.9229 13 6 5.2067 5.9543 6.2753 14 1 5.7172 5.3375 7.0000 15 6 4.6122 7.1567 6.6745 16 7 4.3926 7.3881 7.9432 17 14 4.1326 8.4312 5.3958 18 1 2.7027 8.2566 5.0351 19 1 4.3402 9.7925 5.9517 20 1 4.9735 8.2577 4.1843 21 6 4.0674 5.9619 4.1106 22 6 4.0119 5.5598 2.7957 23 6 4.0053 2.6511 -0.6653 24 1 3.3596 3.3728 -1.1656 25 6 5.3435 2.6104 -1.3572 26 8 6.3464 2.3894 -0.7206 27 8 5.4212 2.8197 -2.6809 28 6 3.3601 1.2645 -0.7216 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.2633 1.8418 1.9497 33 1 2.8596 1.0527 1.9652 34 1 3.0717 3.4684 2.4629 35 1 2.2633 3.8609 0.9266 36 1 4.4229 5.0789 0.2450 37 1 5.9420 4.1723 0.4419 38 1 6.8371 3.7047 2.6418 39 1 6.9693 4.3996 4.9939 40 1 3.9809 8.2217 8.2199 41 1 3.2916 6.5936 4.5175 42 1 3.1903 5.8767 2.1704 43 1 6.3014 2.7842 -3.0800 44 1 3.2082 0.9758 -1.7617 45 1 4.0118 0.5397 -0.2337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606757256.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:27 Heat of formation + Delta-G solvation = -131.454521 kcal Electronic energy + Delta-G solvation = -27364.263046 eV Core-core repulsion = 23538.498457 eV Total energy + Delta-G solvation = -3825.764589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82470 -40.22940 -39.58474 -38.08030 -36.99330 -35.71565 -34.11235 -32.49670 -31.91224 -31.47017 -28.71484 -27.37383 -25.94930 -25.41739 -23.98002 -23.08500 -22.32430 -21.67284 -20.80669 -19.35923 -19.12566 -18.16900 -17.61923 -17.20307 -16.82118 -16.66362 -16.31166 -16.02762 -15.86480 -15.68641 -15.61438 -15.23875 -14.87948 -14.54336 -14.23113 -14.12963 -14.03707 -13.76352 -13.63589 -13.22649 -12.91236 -12.83387 -12.64361 -12.51911 -12.43571 -12.41335 -12.21086 -11.96250 -11.87214 -11.69687 -11.54024 -11.41400 -11.31376 -10.96200 -10.46012 -9.52224 -9.44029 -9.21470 -8.90877 -6.50625 0.72692 0.88922 1.13602 1.24645 1.40515 1.49209 1.88785 2.11378 2.50831 2.80656 2.96227 3.55989 3.70585 3.78947 3.92885 4.02007 4.11448 4.16178 4.22066 4.35203 4.37162 4.38047 4.45744 4.53549 4.57408 4.58811 4.69206 4.78366 4.81246 4.85454 4.92299 5.01813 5.05797 5.08590 5.10694 5.27245 5.31649 5.59722 5.61344 5.71674 5.89138 5.92695 6.05481 6.11981 6.25131 6.27621 6.40382 6.74266 6.81975 7.02059 8.17915 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.003611 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.257911 B = 7751.651401 C = 8802.339795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.403 6.403 3 C 0.098 3.902 4 H 0.085 0.915 5 C -0.136 4.136 6 C 0.061 3.939 7 N -0.532 5.532 8 C 0.116 3.884 9 C -0.191 4.191 10 C -0.058 4.058 11 C -0.227 4.227 12 C 0.077 3.923 13 C -0.484 4.484 14 H 0.052 0.948 15 C 0.045 3.955 16 N -0.852 5.852 17 Si 0.972 3.028 18 H -0.255 1.255 19 H -0.282 1.282 20 H -0.251 1.251 21 C -0.250 4.250 22 C -0.064 4.064 23 C 0.100 3.900 24 H 0.097 0.903 25 C 0.487 3.513 26 O -0.527 6.527 27 O -0.508 6.508 28 C -0.098 4.098 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.294 0.706 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.429 0.571 44 H 0.102 0.898 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -7.819 -22.764 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C 0.041 3.959 4 H 0.103 0.897 5 C -0.174 4.174 6 C -0.066 4.066 7 N -0.259 5.259 8 C -0.011 4.011 9 C -0.192 4.192 10 C -0.077 4.077 11 C -0.246 4.246 12 C 0.074 3.926 13 C -0.514 4.514 14 H 0.070 0.930 15 C -0.169 4.169 16 N -0.478 5.478 17 Si 0.796 3.204 18 H -0.180 1.180 19 H -0.209 1.209 20 H -0.175 1.175 21 C -0.269 4.269 22 C -0.083 4.083 23 C -0.010 4.010 24 H 0.115 0.885 25 C 0.329 3.671 26 O -0.415 6.415 27 O -0.322 6.322 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.291 0.709 44 H 0.120 0.880 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.189 -8.276 -21.953 24.850 hybrid contribution 0.273 1.187 0.167 1.229 sum -7.916 -7.090 -21.786 24.240 Atomic orbital electron populations 1.22987 0.79493 1.03796 1.00933 1.87887 1.21416 1.27829 1.95127 1.22067 0.94034 0.85001 0.94836 0.89732 1.22091 1.00949 0.96488 0.97860 1.22105 0.87808 0.96733 0.99927 1.61772 1.20499 1.32617 1.10973 1.20840 0.98553 0.88577 0.93084 1.19202 0.98281 1.05893 0.95855 1.20708 0.97253 0.96727 0.93020 1.21124 1.00025 1.07532 0.95963 1.17852 0.90927 0.91465 0.92316 1.19534 1.31942 1.06172 0.93757 0.93013 1.26888 0.91460 1.00733 0.97853 1.69713 1.33143 1.26288 1.18691 0.85409 0.80099 0.75769 0.79107 1.18014 1.20869 1.17455 1.21047 1.00127 1.09455 0.96240 1.20742 0.97415 0.96102 0.94008 1.21157 0.90653 1.00149 0.89025 0.88502 1.23259 0.91507 0.71728 0.80649 1.90749 1.39086 1.44715 1.66930 1.84471 1.41835 1.83154 1.22707 1.21513 0.95715 0.93705 1.02615 0.92489 0.88648 0.93597 0.90033 0.92261 0.90596 0.92867 0.93457 0.90894 0.87336 0.88756 0.89565 0.88405 0.85699 0.70892 0.87986 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.54 16 2 O -0.40 -8.05 10.35 -148.98 -1.54 -9.59 16 3 C 0.10 1.81 2.68 30.67 0.08 1.89 16 4 H 0.08 1.18 7.79 -2.39 -0.02 1.16 16 5 C -0.14 -3.07 5.72 30.64 0.18 -2.89 16 6 C 0.06 1.56 4.75 86.33 0.41 1.97 16 7 N -0.53 -14.58 4.36 -880.07 -3.83 -18.41 16 8 C 0.12 3.51 4.72 85.56 0.40 3.92 16 9 C -0.19 -7.22 4.38 -19.68 -0.09 -7.31 16 10 C -0.06 -2.48 9.67 22.22 0.21 -2.26 16 11 C -0.23 -10.98 9.80 22.73 0.22 -10.75 16 12 C 0.08 3.99 5.19 -21.29 -0.11 3.88 16 13 C -0.48 -27.83 9.60 23.46 0.23 -27.61 16 14 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 15 C 0.04 2.43 5.44 85.26 0.46 2.89 16 16 N -0.85 -47.37 13.93 21.83 0.30 -47.07 16 17 Si 0.97 42.89 24.40 68.60 1.67 44.57 16 18 H -0.25 -10.41 6.70 99.48 0.67 -9.74 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.25 -11.27 6.66 99.48 0.66 -10.60 16 21 C -0.25 -11.56 7.05 22.73 0.16 -11.40 16 22 C -0.06 -2.49 7.70 22.22 0.17 -2.32 16 23 C 0.10 2.08 2.34 44.19 0.10 2.19 16 24 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 25 C 0.49 10.89 6.56 71.24 0.47 11.36 16 26 O -0.53 -16.07 15.79 21.97 0.35 -15.72 16 27 O -0.51 -7.48 13.42 -51.45 -0.69 -8.17 16 28 C -0.10 -1.87 5.01 30.65 0.15 -1.72 16 29 H 0.06 0.56 8.09 -2.39 -0.02 0.54 16 30 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.05 0.57 7.96 -2.39 -0.02 0.56 16 32 H 0.08 1.63 7.96 -2.39 -0.02 1.62 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 2.44 5.60 -2.39 -0.01 2.42 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.24 8.07 -2.38 -0.02 1.23 16 37 H 0.07 2.37 6.01 -2.39 -0.01 2.36 16 38 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 39 H 0.09 4.52 8.06 -2.91 -0.02 4.49 16 40 H 0.29 14.62 8.30 -92.71 -0.77 13.85 16 41 H 0.10 4.49 4.25 -2.91 -0.01 4.48 16 42 H 0.13 3.96 8.04 -2.91 -0.02 3.93 16 43 H 0.43 2.87 9.10 -74.06 -0.67 2.20 16 44 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -68.45 358.32 0.79 -67.67 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.25 Total: 23.34 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 4.28 Total: -36.61 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -3.53 Total: -65.48 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.89 Total: -33.49 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.57 kcal Total: -68.45 0.79 -67.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606757256.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.789 kcal (2) G-P(sol) polarization free energy of solvation -68.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds