Wall clock time and date at job start Tue Mar 31 2020 12:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46832 * 2 1 4 4 C 1.53001 * 109.47042 * 119.99165 * 2 1 3 5 5 C 1.53004 * 109.46642 * 65.00478 * 4 2 1 6 6 N 1.46499 * 109.47184 * 179.97438 * 5 4 2 7 7 C 1.46505 * 120.00115 * 270.00185 * 6 5 4 8 8 C 1.50701 * 109.47202 * 278.08055 * 7 6 5 9 9 H 1.08000 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00136 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99698 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00056 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46805 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47215 * 119.99785 * 12 10 8 15 15 H 1.48498 * 109.47101 * 239.99939 * 12 10 8 16 16 C 1.34776 * 120.00381 * 89.99783 * 6 5 4 17 17 O 1.21522 * 119.99529 * 6.10832 * 16 6 5 18 18 C 1.48090 * 120.00232 * 186.10519 * 16 6 5 19 19 C 1.39534 * 120.01900 * 150.28171 * 18 16 6 20 20 C 1.37884 * 119.97634 * 180.02562 * 19 18 16 21 21 C 1.39338 * 120.01915 * 359.97438 * 20 19 18 22 Xx 1.57005 * 119.97464 * 180.02562 * 21 20 19 23 22 O 1.41993 * 119.99916 * 0.02562 * 22 21 20 24 23 O 1.41996 * 119.99747 * 179.97438 * 22 21 20 25 24 C 1.39342 * 120.04731 * 0.27594 * 21 20 19 26 25 C 1.37876 * 120.02187 * 359.44773 * 25 21 20 27 26 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 28 27 H 1.08994 * 109.47472 * 300.00366 * 1 2 3 29 28 H 1.09006 * 109.47291 * 60.00653 * 1 2 3 30 29 H 1.08994 * 109.47472 * 239.99634 * 2 1 3 31 30 H 1.09003 * 109.47027 * 180.02562 * 3 2 1 32 31 H 1.08997 * 109.47228 * 299.99224 * 3 2 1 33 32 H 1.08994 * 109.47391 * 59.99584 * 3 2 1 34 33 H 1.08990 * 109.47389 * 305.00874 * 4 2 1 35 34 H 1.09003 * 109.47224 * 185.00177 * 4 2 1 36 35 H 1.09003 * 109.47198 * 60.00220 * 5 4 2 37 36 H 1.08994 * 109.47218 * 300.00081 * 5 4 2 38 37 H 1.09001 * 109.46892 * 38.07827 * 7 6 5 39 38 H 1.08996 * 109.47347 * 158.07480 * 7 6 5 40 39 H 0.97000 * 119.99311 * 180.02562 * 11 10 8 41 40 H 1.07997 * 120.01327 * 359.97438 * 19 18 16 42 41 H 1.07996 * 119.99297 * 179.97438 * 20 19 18 43 42 H 0.96698 * 113.99749 * 180.02562 * 23 22 21 44 43 H 0.96702 * 114.00257 * 180.02562 * 24 22 21 45 44 H 1.08004 * 119.98390 * 179.70675 * 25 21 20 46 45 H 1.08002 * 120.00683 * 180.25313 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6352 -2.1953 1.1881 6 7 2.1240 -2.8860 2.3841 7 6 3.4523 -3.5040 2.3816 8 6 3.3748 -4.8590 1.7266 9 1 2.4305 -5.2235 1.3502 10 6 4.5093 -5.6337 1.6088 11 7 5.6591 -5.1899 2.0677 12 14 4.4130 -7.3135 0.7975 13 1 3.0155 -7.5774 0.3701 14 1 5.3075 -7.3429 -0.3875 15 1 4.8394 -8.3559 1.7654 16 6 1.3518 -2.9529 3.4866 17 8 0.2096 -2.5392 3.4544 18 6 1.8950 -3.5307 4.7372 19 6 1.4264 -3.0846 5.9735 20 6 1.9332 -3.6228 7.1374 21 6 2.9127 -4.6122 7.0792 22 8 3.0110 -4.7708 9.6630 23 8 4.4864 -6.2334 8.3465 24 6 3.3851 -5.0546 5.8453 25 6 2.8755 -4.5218 4.6802 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6441 1.2953 35 1 2.0699 -2.6549 0.3005 36 1 0.5490 -2.2723 1.1421 37 1 4.1461 -2.8717 1.8275 38 1 3.8029 -3.6159 3.4076 39 1 6.4572 -5.7348 1.9844 40 1 0.6676 -2.3175 6.0188 41 1 1.5710 -3.2775 8.0944 42 1 3.4247 -5.2058 10.4210 43 1 4.7783 -6.5488 9.2127 44 1 4.1476 -5.8182 5.8015 45 1 3.2389 -4.8678 3.7238 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584942728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:43 Heat of formation + Delta-G solvation = 99.581734 kcal Electronic energy + Delta-G solvation = -25547.697766 eV Core-core repulsion = 21846.522063 eV Total energy + Delta-G solvation = -3701.175704 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.169 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.61960 -38.02458 -37.19099 -36.66333 -34.92845 -31.50380 -30.52300 -29.93858 -28.83385 -28.63503 -28.29963 -27.40134 -25.39153 -24.21691 -22.16385 -21.77871 -20.28713 -19.80614 -19.17579 -17.59587 -16.72302 -16.33732 -15.70939 -15.48565 -15.09526 -14.61246 -14.35518 -14.18408 -13.88980 -13.75255 -13.58638 -13.50133 -12.98665 -12.77228 -12.70107 -12.55642 -12.49628 -12.28637 -12.13624 -11.72648 -11.53855 -11.48310 -11.44818 -11.17793 -10.92236 -10.89721 -10.85901 -10.74411 -10.52621 -9.85171 -9.38320 -8.79718 -8.63361 -8.43025 -6.92688 -6.85648 -6.54042 -5.57643 -4.10486 0.18759 1.26165 1.64727 1.79644 1.83799 2.12254 2.52136 2.64699 2.78923 2.99801 4.16559 4.42453 4.57155 4.58985 4.64535 4.68493 4.88737 4.98558 5.05664 5.15345 5.19853 5.26721 5.29572 5.38473 5.38874 5.44171 5.58152 5.64770 5.67331 5.68503 5.74994 5.80521 5.82790 5.94521 5.99334 6.08941 6.11264 6.15564 6.29125 6.39773 6.47081 6.63472 7.06690 7.24044 7.32113 7.64503 8.13833 10.21583 10.35070 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.009257 B = 0.004947 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.898299 B = 5658.165409 C = 7987.238010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.132 4.132 5 C 0.112 3.888 6 N -0.613 5.613 7 C 0.110 3.890 8 C -0.119 4.119 9 H 0.137 0.863 10 C -0.066 4.066 11 N -0.596 5.596 12 Si 0.949 3.051 13 H -0.240 1.240 14 H -0.249 1.249 15 H -0.242 1.242 16 C 0.573 3.427 17 O -0.533 6.533 18 C -0.175 4.175 19 C -0.046 4.046 20 C -0.133 4.133 21 C 0.255 3.745 22 O -0.893 6.893 23 O -0.894 6.894 24 C -0.130 4.130 25 C -0.101 4.101 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.142 0.858 39 H 0.337 0.663 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.268 0.732 43 H 0.268 0.732 44 H 0.150 0.850 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.140 7.417 -27.951 28.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.171 4.171 5 C -0.010 4.010 6 N -0.345 5.345 7 C -0.011 4.011 8 C -0.138 4.138 9 H 0.155 0.845 10 C -0.280 4.280 11 N -0.243 5.243 12 Si 0.766 3.234 13 H -0.163 1.163 14 H -0.172 1.172 15 H -0.165 1.165 16 C 0.364 3.636 17 O -0.411 6.411 18 C -0.178 4.178 19 C -0.065 4.065 20 C -0.151 4.151 21 C 0.233 3.767 22 O -0.711 6.711 23 O -0.712 6.712 24 C -0.148 4.148 25 C -0.119 4.119 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.167 0.833 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.205 8.206 -29.140 30.443 hybrid contribution 1.007 -1.274 1.334 2.102 sum -2.198 6.933 -27.806 28.741 Atomic orbital electron populations 1.21903 0.95048 1.02072 1.01716 1.21042 0.96078 0.96205 0.97841 1.21831 1.00900 0.95948 1.01761 1.22033 1.01216 0.95199 0.98608 1.21598 1.01285 0.91740 0.86357 1.47862 1.17293 1.55752 1.13591 1.21575 0.84125 0.90940 1.04470 1.25897 0.97413 0.95381 0.95149 0.84518 1.26783 0.94360 1.06259 1.00629 1.69896 1.01456 1.38077 1.14866 0.85386 0.82536 0.75417 0.80088 1.16272 1.17208 1.16519 1.18338 0.84803 0.77648 0.82834 1.90738 1.17404 1.48706 1.84217 1.19760 1.01987 1.02568 0.93488 1.21065 0.97797 0.98657 0.88974 1.21399 0.97401 0.96898 0.99412 1.30785 0.85302 0.85077 0.75508 1.93501 1.74542 1.73432 1.29626 1.93499 1.75673 1.74489 1.27506 1.21372 1.02683 1.02492 0.88294 1.22174 0.95526 0.96097 0.98100 0.92338 0.92463 0.92967 0.91237 0.92733 0.92786 0.92617 0.91277 0.91669 0.90544 0.89231 0.87653 0.84182 0.84915 0.84040 0.83061 0.90267 0.90304 0.83267 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.95 37.16 0.33 -0.82 16 2 C -0.09 -0.68 2.92 -90.62 -0.26 -0.94 16 3 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 4 C -0.13 -1.16 5.01 -26.73 -0.13 -1.30 16 5 C 0.11 1.04 5.21 -4.04 -0.02 1.01 16 6 N -0.61 -7.01 2.46 -176.08 -0.43 -7.44 16 7 C 0.11 1.14 4.64 -5.19 -0.02 1.11 16 8 C -0.12 -1.08 7.46 -34.44 -0.26 -1.34 16 9 H 0.14 1.04 7.81 -52.49 -0.41 0.63 16 10 C -0.07 -0.61 5.33 -17.82 -0.09 -0.70 16 11 N -0.60 -6.15 13.29 55.43 0.74 -5.42 16 12 Si 0.95 7.50 29.54 -169.99 -5.02 2.48 16 13 H -0.24 -1.90 7.11 56.52 0.40 -1.50 16 14 H -0.25 -1.94 7.11 56.52 0.40 -1.54 16 15 H -0.24 -2.34 7.11 56.52 0.40 -1.94 16 16 C 0.57 8.65 7.47 -12.22 -0.09 8.56 16 17 O -0.53 -9.28 16.25 5.35 0.09 -9.19 16 18 C -0.18 -2.95 5.59 -104.89 -0.59 -3.54 16 19 C -0.05 -0.84 9.58 -39.23 -0.38 -1.21 16 20 C -0.13 -3.01 9.74 -39.30 -0.38 -3.40 16 21 C 0.26 6.89 9.79 -38.76 -0.38 6.51 16 22 O -0.89 -34.23 17.23 -57.73 -0.99 -35.22 16 23 O -0.89 -34.04 17.23 -57.73 -0.99 -35.03 16 24 C -0.13 -2.88 9.74 -39.30 -0.38 -3.26 16 25 C -0.10 -1.71 7.47 -39.23 -0.29 -2.01 16 26 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 36 H 0.09 0.93 5.77 -51.93 -0.30 0.63 16 37 H 0.11 0.95 8.13 -51.93 -0.42 0.52 16 38 H 0.14 1.76 4.09 -51.95 -0.21 1.55 16 39 H 0.34 2.93 8.31 -40.82 -0.34 2.59 16 40 H 0.14 2.26 7.91 -52.49 -0.42 1.85 16 41 H 0.15 3.57 7.75 -52.49 -0.41 3.16 16 42 H 0.27 9.88 8.90 45.56 0.41 10.29 16 43 H 0.27 9.83 8.90 45.56 0.41 10.24 16 44 H 0.15 3.45 7.75 -52.48 -0.41 3.04 16 45 H 0.16 2.16 2.99 -52.49 -0.16 2.00 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -45.29 383.49 -8.65 -53.94 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -5.20 Total: 32.10 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.61 Total: -2.00 kcal Atomic # 7 Polarization: -13.16 SS G_CDS: 0.30 Total: -12.86 kcal Atomic # 8 Polarization: -77.54 SS G_CDS: -1.90 Total: -79.44 kcal Atomic # 14 Polarization: 7.50 SS G_CDS: -5.02 Total: 2.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -45.29 -8.65 -53.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584942728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.522 kcal (2) G-P(sol) polarization free energy of solvation -45.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds