Wall clock time and date at job start Tue Mar 31 2020 12:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46832 * 2 1 4 4 C 1.53001 * 109.47042 * 119.99165 * 2 1 3 5 5 C 1.53004 * 109.46642 * 65.00478 * 4 2 1 6 6 N 1.46499 * 109.47184 * 179.97438 * 5 4 2 7 7 C 1.46505 * 120.00115 * 270.00185 * 6 5 4 8 8 C 1.50701 * 109.47202 * 278.08055 * 7 6 5 9 9 H 1.08000 * 119.99727 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00136 * 180.02562 * 8 7 6 11 11 N 1.31515 * 119.99698 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00056 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.46805 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47215 * 119.99785 * 12 10 8 15 15 H 1.48498 * 109.47101 * 239.99939 * 12 10 8 16 16 C 1.34776 * 120.00381 * 89.99783 * 6 5 4 17 17 O 1.21522 * 119.99529 * 6.10832 * 16 6 5 18 18 C 1.48090 * 120.00232 * 186.10519 * 16 6 5 19 19 C 1.39534 * 120.01900 * 150.28171 * 18 16 6 20 20 C 1.37884 * 119.97634 * 180.02562 * 19 18 16 21 21 C 1.39338 * 120.01915 * 359.97438 * 20 19 18 22 Xx 1.57005 * 119.97464 * 180.02562 * 21 20 19 23 22 O 1.41993 * 119.99916 * 0.02562 * 22 21 20 24 23 O 1.41996 * 119.99747 * 179.97438 * 22 21 20 25 24 C 1.39342 * 120.04731 * 0.27594 * 21 20 19 26 25 C 1.37876 * 120.02187 * 359.44773 * 25 21 20 27 26 H 1.08998 * 109.46912 * 179.97438 * 1 2 3 28 27 H 1.08994 * 109.47472 * 300.00366 * 1 2 3 29 28 H 1.09006 * 109.47291 * 60.00653 * 1 2 3 30 29 H 1.08994 * 109.47472 * 239.99634 * 2 1 3 31 30 H 1.09003 * 109.47027 * 180.02562 * 3 2 1 32 31 H 1.08997 * 109.47228 * 299.99224 * 3 2 1 33 32 H 1.08994 * 109.47391 * 59.99584 * 3 2 1 34 33 H 1.08990 * 109.47389 * 305.00874 * 4 2 1 35 34 H 1.09003 * 109.47224 * 185.00177 * 4 2 1 36 35 H 1.09003 * 109.47198 * 60.00220 * 5 4 2 37 36 H 1.08994 * 109.47218 * 300.00081 * 5 4 2 38 37 H 1.09001 * 109.46892 * 38.07827 * 7 6 5 39 38 H 1.08996 * 109.47347 * 158.07480 * 7 6 5 40 39 H 0.97000 * 119.99311 * 180.02562 * 11 10 8 41 40 H 1.07997 * 120.01327 * 359.97438 * 19 18 16 42 41 H 1.07996 * 119.99297 * 179.97438 * 20 19 18 43 42 H 0.96698 * 113.99749 * 180.02562 * 23 22 21 44 43 H 0.96702 * 114.00257 * 180.02562 * 24 22 21 45 44 H 1.08004 * 119.98390 * 179.70675 * 25 21 20 46 45 H 1.08002 * 120.00683 * 180.25313 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6352 -2.1953 1.1881 6 7 2.1240 -2.8860 2.3841 7 6 3.4523 -3.5040 2.3816 8 6 3.3748 -4.8590 1.7266 9 1 2.4305 -5.2235 1.3502 10 6 4.5093 -5.6337 1.6088 11 7 5.6591 -5.1899 2.0677 12 14 4.4130 -7.3135 0.7975 13 1 3.0155 -7.5774 0.3701 14 1 5.3075 -7.3429 -0.3875 15 1 4.8394 -8.3559 1.7654 16 6 1.3518 -2.9529 3.4866 17 8 0.2096 -2.5392 3.4544 18 6 1.8950 -3.5307 4.7372 19 6 1.4264 -3.0846 5.9735 20 6 1.9332 -3.6228 7.1374 21 6 2.9127 -4.6122 7.0792 22 8 3.0110 -4.7708 9.6630 23 8 4.4864 -6.2334 8.3465 24 6 3.3851 -5.0546 5.8453 25 6 2.8755 -4.5218 4.6802 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 3.1263 -0.6441 1.2953 35 1 2.0699 -2.6549 0.3005 36 1 0.5490 -2.2723 1.1421 37 1 4.1461 -2.8717 1.8275 38 1 3.8029 -3.6159 3.4076 39 1 6.4572 -5.7348 1.9844 40 1 0.6676 -2.3175 6.0188 41 1 1.5710 -3.2775 8.0944 42 1 3.4247 -5.2058 10.4210 43 1 4.7783 -6.5488 9.2127 44 1 4.1476 -5.8182 5.8015 45 1 3.2389 -4.8678 3.7238 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584942728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:42 Heat of formation + Delta-G solvation = 57.535245 kcal Electronic energy + Delta-G solvation = -25549.521039 eV Core-core repulsion = 21846.522063 eV Total energy + Delta-G solvation = -3702.998976 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 308.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07134 -39.82102 -38.22198 -37.42568 -35.83605 -33.05272 -32.51329 -31.18973 -31.08429 -30.63232 -29.67825 -27.94365 -26.33150 -25.36689 -24.11228 -23.36574 -21.11861 -20.82463 -20.00126 -18.85614 -17.87770 -17.33875 -16.91838 -16.58539 -16.28565 -16.16168 -15.57814 -15.24816 -15.10822 -14.83089 -14.68973 -14.46126 -14.26543 -14.11967 -13.91893 -13.80422 -13.51110 -13.40735 -13.34571 -13.07506 -13.02722 -12.69523 -12.31202 -12.14678 -12.10959 -11.80997 -11.62160 -11.50271 -11.35591 -11.20060 -10.68934 -10.57102 -10.19231 -9.64847 -9.27918 -9.26361 -9.20749 -8.42066 -4.88326 -2.10045 -0.81947 -0.34769 1.14342 1.16397 1.36018 1.54060 1.69207 1.89746 2.01399 2.18508 3.00291 3.06026 3.29855 3.48809 3.55837 3.91864 3.94065 3.97836 4.05065 4.11099 4.15532 4.20472 4.31208 4.43107 4.47736 4.50278 4.58997 4.62437 4.77347 4.84257 4.88792 4.96038 5.00696 5.02991 5.04504 5.10277 5.16827 5.20504 5.28027 5.40035 5.47605 5.53372 5.61275 6.10223 6.87030 6.92974 7.60567 7.71894 Molecular weight = 308.17amu Principal moments of inertia in cm(-1) A = 0.009257 B = 0.004947 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.898299 B = 5658.165409 C = 7987.238010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.129 4.129 5 C 0.109 3.891 6 N -0.593 5.593 7 C 0.103 3.897 8 C -0.120 4.120 9 H 0.166 0.834 10 C -0.069 4.069 11 N -0.616 5.616 12 Si 0.987 3.013 13 H -0.229 1.229 14 H -0.248 1.248 15 H -0.277 1.277 16 C 0.578 3.422 17 O -0.541 6.541 18 C -0.132 4.132 19 C -0.001 4.001 20 C -0.124 4.124 21 C 0.320 3.680 22 O -1.075 7.075 23 O -1.070 7.070 24 C -0.121 4.121 25 C -0.047 4.047 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.119 0.881 39 H 0.344 0.656 40 H 0.200 0.800 41 H 0.155 0.845 42 H 0.237 0.763 43 H 0.238 0.762 44 H 0.154 0.846 45 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 10.797 -37.678 39.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.168 4.168 5 C -0.011 4.011 6 N -0.324 5.324 7 C -0.017 4.017 8 C -0.139 4.139 9 H 0.184 0.816 10 C -0.283 4.283 11 N -0.264 5.264 12 Si 0.804 3.196 13 H -0.151 1.151 14 H -0.171 1.171 15 H -0.202 1.202 16 C 0.366 3.634 17 O -0.419 6.419 18 C -0.135 4.135 19 C -0.019 4.019 20 C -0.142 4.142 21 C 0.309 3.691 22 O -0.896 6.896 23 O -0.891 6.891 24 C -0.139 4.139 25 C -0.064 4.064 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.136 0.864 39 H 0.158 0.842 40 H 0.216 0.784 41 H 0.173 0.827 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.172 0.828 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.264 11.662 -39.029 41.213 hybrid contribution 1.572 -1.771 3.082 3.886 sum -4.692 9.892 -35.947 37.577 Atomic orbital electron populations 1.21910 0.95456 1.02031 1.01415 1.21026 0.95634 0.96206 0.97870 1.21842 1.01140 0.95987 1.01623 1.21997 1.01584 0.94834 0.98357 1.21893 1.01360 0.91877 0.86019 1.47864 1.16966 1.54479 1.13077 1.21643 0.83796 0.92543 1.03744 1.26133 0.98499 0.94178 0.95076 0.81645 1.27039 0.94129 1.06931 1.00182 1.69901 1.02288 1.38942 1.15248 0.84818 0.82902 0.73064 0.78791 1.15067 1.17146 1.20173 1.17699 0.84908 0.78203 0.82598 1.90807 1.17940 1.48989 1.84195 1.20425 0.98551 0.99348 0.95147 1.21388 0.97124 0.97884 0.85508 1.21621 0.95462 0.94835 1.02307 1.28841 0.91563 0.90917 0.57784 1.93384 1.79274 1.77775 1.39184 1.93375 1.85025 1.83727 1.26954 1.21623 1.03174 1.02915 0.86173 1.22627 0.93611 0.94126 0.95989 0.92177 0.93964 0.92219 0.89464 0.92365 0.92152 0.93664 0.93438 0.90868 0.86877 0.89651 0.84855 0.86430 0.84180 0.78351 0.82726 0.93565 0.93532 0.82831 0.77389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.95 71.98 0.64 -0.89 16 2 C -0.09 -0.75 2.92 -10.79 -0.03 -0.79 16 3 C -0.15 -1.38 9.19 71.98 0.66 -0.72 16 4 C -0.13 -1.35 5.01 30.60 0.15 -1.20 16 5 C 0.11 1.05 5.21 86.38 0.45 1.50 16 6 N -0.59 -7.93 2.46 -829.28 -2.04 -9.98 16 7 C 0.10 1.20 4.64 85.63 0.40 1.59 16 8 C -0.12 -1.14 7.46 25.60 0.19 -0.94 16 9 H 0.17 0.80 7.81 -2.91 -0.02 0.78 16 10 C -0.07 -0.83 5.33 84.65 0.45 -0.37 16 11 N -0.62 -9.52 13.29 21.45 0.28 -9.23 16 12 Si 0.99 10.76 29.54 68.60 2.03 12.79 16 13 H -0.23 -2.15 7.11 99.48 0.71 -1.44 16 14 H -0.25 -2.74 7.11 99.48 0.71 -2.03 16 15 H -0.28 -4.68 7.11 99.48 0.71 -3.97 16 16 C 0.58 11.78 7.47 86.86 0.65 12.43 16 17 O -0.54 -13.69 16.25 -3.79 -0.06 -13.76 16 18 C -0.13 -3.21 5.59 -20.04 -0.11 -3.32 16 19 C 0.00 -0.03 9.58 22.50 0.22 0.19 16 20 C -0.12 -5.20 9.74 22.45 0.22 -4.98 16 21 C 0.32 17.32 9.79 22.80 0.22 17.55 16 22 O -1.08 -96.73 17.23 -127.47 -2.20 -98.93 16 23 O -1.07 -95.44 17.23 -127.47 -2.20 -97.64 16 24 C -0.12 -4.94 9.74 22.45 0.22 -4.72 16 25 C -0.05 -1.21 7.47 22.49 0.17 -1.04 16 26 H 0.06 0.59 6.57 -2.39 -0.02 0.57 16 27 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 0.42 8.07 -2.39 -0.02 0.41 16 36 H 0.09 1.04 5.77 -2.39 -0.01 1.03 16 37 H 0.13 1.12 8.13 -2.39 -0.02 1.10 16 38 H 0.12 1.88 4.09 -2.41 -0.01 1.87 16 39 H 0.34 4.69 8.31 -92.71 -0.77 3.92 16 40 H 0.20 4.17 7.91 -2.91 -0.02 4.15 16 41 H 0.16 7.12 7.75 -2.91 -0.02 7.10 16 42 H 0.24 21.67 8.90 -74.06 -0.66 21.01 16 43 H 0.24 21.57 8.90 -74.06 -0.66 20.91 16 44 H 0.15 6.91 7.75 -2.91 -0.02 6.88 16 45 H 0.21 3.91 2.99 -2.91 -0.01 3.90 16 Total: -1.00 -131.98 383.49 0.01 -131.97 By element: Atomic # 1 Polarization: 70.79 SS G_CDS: -0.30 Total: 70.49 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 4.50 Total: 14.28 kcal Atomic # 7 Polarization: -17.45 SS G_CDS: -1.76 Total: -19.21 kcal Atomic # 8 Polarization: -205.87 SS G_CDS: -4.45 Total: -210.32 kcal Atomic # 14 Polarization: 10.76 SS G_CDS: 2.03 Total: 12.79 kcal Total: -131.98 0.01 -131.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584942728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.501 kcal (2) G-P(sol) polarization free energy of solvation -131.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -131.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds