Wall clock time and date at job start Tue Mar 31 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37680 * 120.03975 * 2 1 4 4 C 1.39120 * 120.06954 * 180.27837 * 3 2 1 5 5 N 1.39430 * 119.92035 * 179.70109 * 4 3 2 6 6 C 1.34780 * 120.00430 * 34.28449 * 5 4 3 7 7 O 1.21571 * 119.99926 * 5.13414 * 6 5 4 8 8 N 1.34779 * 120.00107 * 185.13807 * 6 5 4 9 9 C 1.46495 * 119.99840 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46939 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47248 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99414 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00003 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00337 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99728 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46972 * 89.99780 * 15 13 11 17 17 H 1.48498 * 109.46675 * 209.99920 * 15 13 11 18 18 H 1.48495 * 109.47027 * 329.99554 * 15 13 11 19 19 C 1.39154 * 120.15177 * 359.71948 * 4 3 2 20 20 C 1.37641 * 120.07465 * 0.02562 * 19 4 3 21 21 C 1.39739 * 120.03395 * 179.74518 * 2 1 3 22 22 C 1.47583 * 120.07718 * 359.97438 * 21 2 1 23 23 O 1.21587 * 119.99994 * 304.32869 * 22 21 2 24 24 N 1.34779 * 120.00407 * 124.32238 * 22 21 2 25 25 C 1.46492 * 119.99959 * 184.94730 * 24 22 21 26 26 C 1.46505 * 119.99416 * 4.94863 * 24 22 21 27 27 H 1.08998 * 109.47103 * 274.42104 * 1 2 3 28 28 H 1.09005 * 109.47136 * 34.41792 * 1 2 3 29 29 H 1.09004 * 109.47524 * 154.41968 * 1 2 3 30 30 H 1.07996 * 119.96585 * 359.97438 * 3 2 1 31 31 H 0.97003 * 119.99992 * 214.28647 * 5 4 3 32 32 H 0.97004 * 119.99950 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47080 * 299.99590 * 9 8 6 34 34 H 1.08999 * 109.46959 * 60.00314 * 9 8 6 35 35 H 1.08999 * 109.47265 * 300.00271 * 10 9 8 36 36 H 1.08999 * 109.47320 * 60.00126 * 10 9 8 37 37 H 0.97000 * 120.00029 * 180.02562 * 14 13 11 38 38 H 1.08000 * 119.96293 * 180.02562 * 19 4 3 39 39 H 1.07996 * 120.03903 * 179.97438 * 20 19 4 40 40 H 1.08998 * 109.47525 * 269.99783 * 25 24 22 41 41 H 1.09001 * 109.46978 * 150.00050 * 25 24 22 42 42 H 1.08993 * 109.47574 * 30.00317 * 25 24 22 43 43 H 1.09000 * 109.46179 * 178.73834 * 26 24 22 44 44 H 1.08997 * 109.46834 * 298.73737 * 26 24 22 45 45 H 1.08997 * 109.46784 * 58.74214 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1919 0.0000 4 6 3.5874 1.1926 -0.0058 5 7 4.2822 2.4014 -0.0121 6 6 3.7847 3.4682 0.6445 7 8 2.7798 3.3525 1.3188 8 7 4.4013 4.6632 0.5535 9 6 3.8602 5.8228 1.2667 10 6 4.7418 7.0439 0.9976 11 6 4.1856 8.2367 1.7318 12 1 3.2924 8.1340 2.3301 13 6 4.8164 9.4591 1.6388 14 7 5.9038 9.5842 0.9097 15 14 4.1273 10.9375 2.5495 16 1 4.7298 11.0088 3.9049 17 1 4.4510 12.1767 1.7980 18 1 2.6534 10.8020 2.6693 19 6 4.2870 -0.0103 -0.0058 20 6 3.6041 -1.2054 -0.0005 21 6 2.2064 -1.2097 0.0054 22 6 1.4709 -2.4893 0.0116 23 8 0.6535 -2.7164 0.8826 24 7 1.7053 -3.4060 -0.9481 25 6 0.9001 -4.6285 -1.0056 26 6 2.7654 -3.1799 -1.9338 27 1 -0.3633 0.0792 1.0246 28 1 -0.3634 0.8478 -0.5809 29 1 -0.3634 -0.9269 -0.4437 30 1 1.6563 2.1272 -0.0004 31 1 5.1237 2.4747 -0.4891 32 1 5.2029 4.7556 0.0151 33 1 2.8465 6.0224 0.9194 34 1 3.8436 5.6158 2.3367 35 1 5.7554 6.8441 1.3451 36 1 4.7589 7.2511 -0.0724 37 1 6.3478 10.4442 0.8446 38 1 5.3670 -0.0062 -0.0100 39 1 4.1477 -2.1386 -0.0009 40 1 1.3737 -5.4043 -0.4041 41 1 0.8248 -4.9656 -2.0395 42 1 -0.0975 -4.4252 -0.6163 43 1 2.8201 -4.0328 -2.6103 44 1 2.5449 -2.2774 -2.5038 45 1 3.7195 -3.0616 -1.4203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273307708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:29 Heat of formation + Delta-G solvation = -38.429950 kcal Electronic energy + Delta-G solvation = -25775.471578 eV Core-core repulsion = 21986.033588 eV Total energy + Delta-G solvation = -3789.437990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.91410 -40.08254 -38.33123 -35.87540 -35.31770 -34.67886 -32.93276 -32.61898 -30.71514 -29.33418 -28.18330 -27.41246 -26.28144 -24.89734 -23.33533 -21.90813 -21.13171 -20.73022 -19.83089 -18.33325 -17.52665 -17.28073 -16.58303 -16.37969 -16.25138 -15.45343 -15.07262 -14.76406 -14.59566 -14.49531 -14.14803 -13.86662 -13.58725 -13.43310 -13.27499 -13.17453 -13.06848 -12.85010 -12.70441 -12.42800 -12.32625 -12.19498 -12.00010 -11.30239 -11.24853 -11.08133 -10.67028 -10.50148 -10.31580 -10.12857 -9.99797 -9.63344 -9.31923 -9.04785 -8.88841 -8.67810 -8.44219 -8.09741 -6.12973 -4.15868 0.84906 1.23259 2.41502 2.70036 2.74824 3.24880 3.27844 3.34133 3.38554 3.68650 4.23511 4.31034 4.45210 4.59018 4.66340 4.69183 4.91794 4.96486 5.07983 5.14830 5.23071 5.24422 5.29082 5.38177 5.42442 5.52409 5.60441 5.75854 5.90236 6.03265 6.06515 6.12387 6.26544 6.27527 6.30341 6.43893 6.68074 6.81147 6.88270 6.98087 7.01761 7.49155 7.56288 7.85436 7.87234 8.10919 8.25910 8.71448 8.90149 9.49268 10.98587 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.036924 B = 0.001994 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.129460 B =14035.766701 C =14550.623409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.015 4.015 3 C -0.127 4.127 4 C 0.205 3.795 5 N -0.692 5.692 6 C 0.695 3.305 7 O -0.575 6.575 8 N -0.730 5.730 9 C 0.138 3.862 10 C 0.013 3.987 11 C -0.522 4.522 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.164 4.164 20 C -0.066 4.066 21 C -0.160 4.160 22 C 0.568 3.432 23 O -0.530 6.530 24 N -0.622 5.622 25 C 0.086 3.914 26 C 0.077 3.923 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.407 0.593 32 H 0.396 0.604 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 -27.087 -9.878 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.016 4.016 3 C -0.148 4.148 4 C 0.108 3.892 5 N -0.339 5.339 6 C 0.396 3.604 7 O -0.452 6.452 8 N -0.383 5.383 9 C 0.016 3.984 10 C -0.025 4.025 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.185 4.185 20 C -0.085 4.085 21 C -0.164 4.164 22 C 0.357 3.643 23 O -0.406 6.406 24 N -0.356 5.356 25 C -0.057 4.057 26 C -0.066 4.066 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.243 0.757 32 H 0.229 0.771 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.999 -27.041 -8.835 28.728 hybrid contribution 0.819 0.948 -0.075 1.255 sum -3.180 -26.093 -8.909 27.755 Atomic orbital electron populations 1.20829 0.90466 1.02412 1.03387 1.19686 0.96229 0.90873 0.94843 1.21043 0.92592 0.98664 1.02458 1.17636 0.91246 0.84562 0.95769 1.42715 1.26400 1.09319 1.55452 1.16079 0.83668 0.80486 0.80216 1.90936 1.26106 1.83877 1.44233 1.45600 1.31138 1.08231 1.53341 1.21695 0.98281 0.83304 0.95167 1.19336 0.94912 0.90400 0.97839 1.21033 1.11568 0.93546 1.29901 0.92166 1.24993 0.94895 0.99051 0.95344 1.69950 1.18676 1.25012 1.39644 0.86498 0.79510 0.81794 0.79682 1.20543 1.21164 1.19696 1.20726 0.99945 0.90711 1.07080 1.20895 0.92270 0.97717 0.97575 1.19537 0.93801 0.92519 1.10554 1.18329 0.81865 0.83280 0.80835 1.90797 1.35108 1.78869 1.35863 1.47714 1.36343 1.20754 1.30789 1.21668 0.96407 0.85776 1.01801 1.21958 0.90338 1.02460 0.91836 0.90071 0.91146 0.91797 0.83817 0.75698 0.77082 0.92425 0.92454 0.95900 0.95876 0.92826 0.85143 0.85280 0.92738 0.91163 0.90586 0.90537 0.91718 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.26 36.00 0.33 -1.01 16 2 C -0.01 -0.19 5.91 -104.27 -0.62 -0.80 16 3 C -0.13 -1.76 8.29 -39.46 -0.33 -2.09 16 4 C 0.21 2.54 6.26 -83.74 -0.52 2.02 16 5 N -0.69 -8.41 5.32 -14.22 -0.08 -8.48 16 6 C 0.70 11.48 8.29 -86.91 -0.72 10.76 16 7 O -0.57 -11.71 14.06 5.30 0.07 -11.63 16 8 N -0.73 -12.05 5.56 -65.23 -0.36 -12.41 16 9 C 0.14 2.84 5.61 -4.04 -0.02 2.82 16 10 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 11 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 15 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.16 -1.58 9.94 -39.46 -0.39 -1.98 16 20 C -0.07 -0.62 8.20 -39.22 -0.32 -0.94 16 21 C -0.16 -1.86 5.03 -104.95 -0.53 -2.39 16 22 C 0.57 6.75 6.01 -12.45 -0.07 6.68 16 23 O -0.53 -8.12 15.71 5.29 0.08 -8.04 16 24 N -0.62 -5.21 3.27 -190.75 -0.62 -5.84 16 25 C 0.09 0.56 10.36 59.84 0.62 1.18 16 26 C 0.08 0.40 9.35 59.85 0.56 0.96 16 27 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.06 0.73 6.65 -51.93 -0.35 0.39 16 30 H 0.14 2.25 6.46 -52.49 -0.34 1.92 16 31 H 0.41 3.46 8.83 -40.82 -0.36 3.10 16 32 H 0.40 5.44 8.49 -40.82 -0.35 5.09 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.13 0.88 6.39 -52.49 -0.34 0.55 16 40 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.27 7.93 -51.93 -0.41 -0.14 16 42 H 0.08 0.60 7.49 -51.93 -0.39 0.21 16 43 H 0.08 0.22 7.80 -51.93 -0.41 -0.18 16 44 H 0.06 0.35 8.04 -51.93 -0.42 -0.07 16 45 H 0.07 0.29 5.57 -51.93 -0.29 0.00 16 LS Contribution 374.99 15.07 5.65 5.65 Total: -1.00 -34.75 374.99 -8.67 -43.42 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.56 Total: 3.78 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.57 Total: 2.37 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: -0.33 Total: -51.69 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.16 Total: -19.67 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.75 -8.67 -43.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273307708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.987 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds