Wall clock time and date at job start Tue Mar 31 2020 12:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37680 * 120.03975 * 2 1 4 4 C 1.39120 * 120.06954 * 180.27837 * 3 2 1 5 5 N 1.39430 * 119.92035 * 179.70109 * 4 3 2 6 6 C 1.34780 * 120.00430 * 34.28449 * 5 4 3 7 7 O 1.21571 * 119.99926 * 5.13414 * 6 5 4 8 8 N 1.34779 * 120.00107 * 185.13807 * 6 5 4 9 9 C 1.46495 * 119.99840 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46939 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47248 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99414 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00003 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00337 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99728 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46972 * 89.99780 * 15 13 11 17 17 H 1.48498 * 109.46675 * 209.99920 * 15 13 11 18 18 H 1.48495 * 109.47027 * 329.99554 * 15 13 11 19 19 C 1.39154 * 120.15177 * 359.71948 * 4 3 2 20 20 C 1.37641 * 120.07465 * 0.02562 * 19 4 3 21 21 C 1.39739 * 120.03395 * 179.74518 * 2 1 3 22 22 C 1.47583 * 120.07718 * 359.97438 * 21 2 1 23 23 O 1.21587 * 119.99994 * 304.32869 * 22 21 2 24 24 N 1.34779 * 120.00407 * 124.32238 * 22 21 2 25 25 C 1.46492 * 119.99959 * 184.94730 * 24 22 21 26 26 C 1.46505 * 119.99416 * 4.94863 * 24 22 21 27 27 H 1.08998 * 109.47103 * 274.42104 * 1 2 3 28 28 H 1.09005 * 109.47136 * 34.41792 * 1 2 3 29 29 H 1.09004 * 109.47524 * 154.41968 * 1 2 3 30 30 H 1.07996 * 119.96585 * 359.97438 * 3 2 1 31 31 H 0.97003 * 119.99992 * 214.28647 * 5 4 3 32 32 H 0.97004 * 119.99950 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47080 * 299.99590 * 9 8 6 34 34 H 1.08999 * 109.46959 * 60.00314 * 9 8 6 35 35 H 1.08999 * 109.47265 * 300.00271 * 10 9 8 36 36 H 1.08999 * 109.47320 * 60.00126 * 10 9 8 37 37 H 0.97000 * 120.00029 * 180.02562 * 14 13 11 38 38 H 1.08000 * 119.96293 * 180.02562 * 19 4 3 39 39 H 1.07996 * 120.03903 * 179.97438 * 20 19 4 40 40 H 1.08998 * 109.47525 * 269.99783 * 25 24 22 41 41 H 1.09001 * 109.46978 * 150.00050 * 25 24 22 42 42 H 1.08993 * 109.47574 * 30.00317 * 25 24 22 43 43 H 1.09000 * 109.46179 * 178.73834 * 26 24 22 44 44 H 1.08997 * 109.46834 * 298.73737 * 26 24 22 45 45 H 1.08997 * 109.46784 * 58.74214 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1919 0.0000 4 6 3.5874 1.1926 -0.0058 5 7 4.2822 2.4014 -0.0121 6 6 3.7847 3.4682 0.6445 7 8 2.7798 3.3525 1.3188 8 7 4.4013 4.6632 0.5535 9 6 3.8602 5.8228 1.2667 10 6 4.7418 7.0439 0.9976 11 6 4.1856 8.2367 1.7318 12 1 3.2924 8.1340 2.3301 13 6 4.8164 9.4591 1.6388 14 7 5.9038 9.5842 0.9097 15 14 4.1273 10.9375 2.5495 16 1 4.7298 11.0088 3.9049 17 1 4.4510 12.1767 1.7980 18 1 2.6534 10.8020 2.6693 19 6 4.2870 -0.0103 -0.0058 20 6 3.6041 -1.2054 -0.0005 21 6 2.2064 -1.2097 0.0054 22 6 1.4709 -2.4893 0.0116 23 8 0.6535 -2.7164 0.8826 24 7 1.7053 -3.4060 -0.9481 25 6 0.9001 -4.6285 -1.0056 26 6 2.7654 -3.1799 -1.9338 27 1 -0.3633 0.0792 1.0246 28 1 -0.3634 0.8478 -0.5809 29 1 -0.3634 -0.9269 -0.4437 30 1 1.6563 2.1272 -0.0004 31 1 5.1237 2.4747 -0.4891 32 1 5.2029 4.7556 0.0151 33 1 2.8465 6.0224 0.9194 34 1 3.8436 5.6158 2.3367 35 1 5.7554 6.8441 1.3451 36 1 4.7589 7.2511 -0.0724 37 1 6.3478 10.4442 0.8446 38 1 5.3670 -0.0062 -0.0100 39 1 4.1477 -2.1386 -0.0009 40 1 1.3737 -5.4043 -0.4041 41 1 0.8248 -4.9656 -2.0395 42 1 -0.0975 -4.4252 -0.6163 43 1 2.8201 -4.0328 -2.6103 44 1 2.5449 -2.2774 -2.5038 45 1 3.7195 -3.0616 -1.4203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273307708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:29 Heat of formation + Delta-G solvation = -62.510672 kcal Electronic energy + Delta-G solvation = -25776.515796 eV Core-core repulsion = 21986.033588 eV Total energy + Delta-G solvation = -3790.482208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92824 -41.13827 -39.35045 -36.78249 -36.62456 -35.98167 -34.84941 -33.53077 -32.02558 -30.76084 -28.82052 -28.23591 -27.19854 -26.53812 -24.42741 -22.98823 -22.68764 -22.02140 -20.64356 -19.61967 -18.50792 -18.29510 -18.24340 -17.38495 -17.18491 -16.63013 -16.49028 -16.21001 -15.80328 -15.46568 -15.30768 -15.08226 -14.73300 -14.67083 -14.27830 -14.18360 -14.06460 -13.70776 -13.47627 -13.34731 -13.30840 -13.21906 -12.94707 -12.93348 -12.79041 -12.53031 -12.25857 -12.17647 -11.69847 -11.56239 -11.39883 -11.18580 -10.98375 -10.60162 -10.10505 -9.80188 -9.70657 -9.09496 -8.24030 -6.33738 -0.07929 0.35567 1.42012 1.42468 1.48691 1.53864 1.59979 1.95963 2.09208 2.41079 2.72925 3.11154 3.19452 3.51103 3.76084 3.83930 4.17065 4.30156 4.31546 4.43063 4.44639 4.45879 4.50941 4.54459 4.61337 4.65144 4.75531 4.81277 4.86698 4.91882 4.96966 5.07264 5.12822 5.24491 5.25612 5.33918 5.46996 5.49927 5.53761 5.59644 5.78328 5.92794 5.94910 6.16892 6.26564 6.79198 6.96736 7.05575 7.35414 7.43313 8.87633 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.036924 B = 0.001994 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.129460 B =14035.766701 C =14550.623409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.032 4.032 3 C -0.146 4.146 4 C 0.185 3.815 5 N -0.670 5.670 6 C 0.697 3.303 7 O -0.616 6.616 8 N -0.723 5.723 9 C 0.159 3.841 10 C 0.023 3.977 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.008 3.992 14 N -0.925 5.925 15 Si 0.963 3.037 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.145 4.145 20 C -0.054 4.054 21 C -0.164 4.164 22 C 0.562 3.438 23 O -0.577 6.577 24 N -0.614 5.614 25 C 0.081 3.919 26 C 0.068 3.932 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.428 0.572 32 H 0.411 0.589 33 H 0.046 0.954 34 H 0.045 0.955 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.062 0.938 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -28.797 -10.883 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.033 4.033 3 C -0.167 4.167 4 C 0.089 3.911 5 N -0.319 5.319 6 C 0.397 3.603 7 O -0.496 6.496 8 N -0.377 5.377 9 C 0.035 3.965 10 C -0.014 4.014 11 C -0.585 4.585 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.564 5.564 15 Si 0.788 3.212 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.192 1.192 19 C -0.165 4.165 20 C -0.073 4.073 21 C -0.168 4.168 22 C 0.351 3.649 23 O -0.458 6.458 24 N -0.347 5.347 25 C -0.061 4.061 26 C -0.073 4.073 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.134 0.866 31 H 0.267 0.733 32 H 0.247 0.753 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.186 0.814 39 H 0.182 0.818 40 H 0.081 0.919 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.292 -28.807 -9.919 30.553 hybrid contribution 0.323 1.342 0.159 1.389 sum -1.970 -27.465 -9.760 29.214 Atomic orbital electron populations 1.20768 0.90636 1.02664 1.02596 1.19753 0.96461 0.91287 0.95826 1.20899 0.93639 0.97888 1.04263 1.17848 0.90869 0.85356 0.97043 1.42362 1.26842 1.08128 1.54597 1.16135 0.83037 0.81028 0.80082 1.90920 1.27969 1.84586 1.46123 1.45214 1.31712 1.07451 1.53368 1.21140 0.97044 0.83516 0.94805 1.19137 0.94657 0.91082 0.96546 1.21457 1.11743 0.95001 1.30278 0.92370 1.25830 0.95184 1.01926 0.96126 1.70044 1.19728 1.25884 1.40763 0.85476 0.78947 0.78268 0.78548 1.19856 1.20515 1.19199 1.21068 1.01624 0.89228 1.04608 1.21274 0.91281 0.99120 0.95638 1.19702 0.94993 0.91941 1.10192 1.18447 0.81469 0.83881 0.81118 1.90773 1.37147 1.79822 1.38009 1.47848 1.36578 1.20274 1.29961 1.21834 0.95193 0.85135 1.03914 1.22239 0.89650 1.03808 0.91634 0.91515 0.90446 0.91791 0.86594 0.73292 0.75285 0.93527 0.93620 0.97050 0.97034 0.92556 0.81434 0.81831 0.91942 0.87904 0.92636 0.87636 0.91888 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 9.26 71.23 0.66 -2.12 16 2 C -0.03 -0.83 5.91 -19.63 -0.12 -0.95 16 3 C -0.15 -4.15 8.29 22.35 0.19 -3.96 16 4 C 0.19 4.34 6.26 38.36 0.24 4.58 16 5 N -0.67 -15.31 5.32 -317.17 -1.69 -17.00 16 6 C 0.70 22.91 8.29 179.05 1.48 24.39 16 7 O -0.62 -25.79 14.06 -3.94 -0.06 -25.84 16 8 N -0.72 -23.71 5.56 -478.55 -2.66 -26.37 16 9 C 0.16 6.66 5.61 86.38 0.48 7.15 16 10 C 0.02 1.14 5.09 29.85 0.15 1.29 16 11 C -0.55 -30.09 9.11 25.60 0.23 -29.85 16 12 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 13 C 0.01 0.46 5.46 84.65 0.46 0.92 16 14 N -0.92 -53.30 13.29 21.45 0.28 -53.02 16 15 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 19 C -0.14 -2.30 9.94 22.35 0.22 -2.08 16 20 C -0.05 -0.85 8.20 22.50 0.18 -0.66 16 21 C -0.16 -3.64 5.03 -20.08 -0.10 -3.74 16 22 C 0.56 12.96 6.01 86.71 0.52 13.48 16 23 O -0.58 -18.12 15.71 -3.99 -0.06 -18.18 16 24 N -0.61 -9.03 3.27 -875.68 -2.87 -11.90 16 25 C 0.08 0.91 10.36 127.77 1.32 2.24 16 26 C 0.07 0.46 9.35 127.77 1.19 1.65 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.08 1.75 8.11 -2.38 -0.02 1.73 16 29 H 0.06 1.56 6.65 -2.39 -0.02 1.55 16 30 H 0.12 3.91 6.46 -2.91 -0.02 3.89 16 31 H 0.43 6.12 8.83 -92.71 -0.82 5.30 16 32 H 0.41 10.91 8.49 -92.71 -0.79 10.12 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.16 1.43 6.39 -2.91 -0.02 1.41 16 40 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 41 H 0.10 0.48 7.93 -2.39 -0.02 0.46 16 42 H 0.05 0.87 7.49 -2.39 -0.02 0.85 16 43 H 0.11 0.14 7.80 -2.39 -0.02 0.12 16 44 H 0.06 0.49 8.04 -2.39 -0.02 0.47 16 45 H 0.08 0.34 5.57 -2.39 -0.01 0.33 16 Total: -1.00 -77.97 374.99 1.53 -76.44 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -0.58 Total: 18.20 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 7.13 Total: 12.34 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -6.93 Total: -108.28 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.12 Total: -44.02 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.97 1.53 -76.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273307708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.926 kcal (2) G-P(sol) polarization free energy of solvation -77.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds