Wall clock time and date at job start Tue Mar 31 2020 12:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35758 * 117.00418 * 2 1 4 4 C 1.38902 * 119.60807 * 179.97438 * 3 2 1 5 5 C 1.38329 * 119.17860 * 180.02562 * 4 3 2 6 6 C 1.39362 * 118.43005 * 0.02562 * 5 4 3 7 7 N 1.40183 * 120.42220 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00046 * 16.87463 * 7 6 5 9 9 O 1.21587 * 120.00222 * 357.74331 * 8 7 6 10 10 N 1.34778 * 119.99754 * 178.01841 * 8 7 6 11 11 C 1.46924 * 120.63252 * 3.90571 * 10 8 7 12 12 C 1.53199 * 108.77724 * 126.36703 * 11 10 8 13 13 C 1.53040 * 109.31020 * 54.63247 * 12 11 10 14 14 C 1.53037 * 109.54364 * 298.63923 * 13 12 11 15 15 H 1.09005 * 109.49165 * 301.41373 * 14 13 12 16 16 C 1.50695 * 109.50222 * 181.34854 * 14 13 12 17 17 H 1.08007 * 119.99620 * 0.02562 * 16 14 13 18 18 C 1.37872 * 120.00071 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00319 * 0.02562 * 18 16 14 20 20 Si 1.86810 * 119.99829 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46832 * 90.00258 * 20 18 16 22 22 H 1.48500 * 109.46776 * 210.00195 * 20 18 16 23 23 H 1.48502 * 109.47050 * 330.00406 * 20 18 16 24 24 C 1.46929 * 120.62813 * 183.62351 * 10 8 7 25 25 C 1.38642 * 119.15236 * 0.25113 * 6 5 4 26 26 C 1.50702 * 119.63136 * 179.72899 * 25 6 5 27 27 N 1.31955 * 120.73788 * 359.45605 * 25 6 5 28 28 H 1.09003 * 109.46690 * 300.00419 * 1 2 3 29 29 H 1.09004 * 109.46668 * 59.99459 * 1 2 3 30 30 H 1.08995 * 109.47730 * 179.97438 * 1 2 3 31 31 H 1.07995 * 120.40778 * 359.97438 * 4 3 2 32 32 H 1.08004 * 120.78227 * 179.97438 * 5 4 3 33 33 H 0.97002 * 119.99759 * 196.86758 * 7 6 5 34 34 H 1.08996 * 109.58728 * 246.15362 * 11 10 8 35 35 H 1.08998 * 109.58601 * 6.43953 * 11 10 8 36 36 H 1.08996 * 109.49721 * 174.58868 * 12 11 10 37 37 H 1.08997 * 109.49528 * 294.68533 * 12 11 10 38 38 H 1.09007 * 109.45566 * 58.65891 * 13 12 11 39 39 H 1.09004 * 109.45864 * 178.61237 * 13 12 11 40 40 H 0.96998 * 119.99908 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.58801 * 353.42302 * 24 10 8 42 42 H 1.09005 * 109.58652 * 113.84765 * 24 10 8 43 43 H 1.08994 * 109.47083 * 89.99707 * 26 25 6 44 44 H 1.08995 * 109.47157 * 209.99869 * 26 25 6 45 45 H 1.08996 * 109.46791 * 329.99522 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4330 1.2727 0.0005 5 6 4.0518 2.5098 0.0011 6 6 3.2526 3.6515 0.0016 7 7 3.8358 4.9262 0.0027 8 6 5.1319 5.0746 -0.3356 9 8 5.8063 4.0986 -0.6019 10 7 5.6820 6.3045 -0.3732 11 6 4.9065 7.4842 0.0338 12 6 5.6965 8.2498 1.0999 13 6 7.0930 8.5705 0.5621 14 6 7.8345 7.2677 0.2540 15 1 7.9020 6.6647 1.1596 16 6 9.2211 7.5838 -0.2443 17 1 9.5421 8.6113 -0.3322 18 6 10.0803 6.5614 -0.5869 19 7 9.6896 5.3102 -0.4793 20 14 11.7990 6.9534 -1.2052 21 1 12.7355 7.0211 -0.0547 22 1 12.2422 5.8902 -2.1424 23 1 11.7853 8.2605 -1.9099 24 6 7.0705 6.4903 -0.8163 25 6 1.8734 3.5103 0.0069 26 6 0.9988 4.7376 0.0137 27 7 1.3179 2.3134 0.0006 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0214 0.3671 0.0014 32 1 5.1290 2.5891 0.0019 33 1 3.3064 5.7015 0.2468 34 1 4.7398 8.1278 -0.8299 35 1 3.9476 7.1674 0.4439 36 1 5.1776 9.1775 1.3410 37 1 5.7841 7.6376 1.9974 38 1 7.0040 9.1619 -0.3493 39 1 7.6488 9.1368 1.3094 40 1 10.2940 4.5910 -0.7207 41 1 7.5399 5.5178 -0.9646 42 1 7.0839 7.0512 -1.7508 43 1 0.7838 5.0362 -1.0123 44 1 0.0653 4.5157 0.5307 45 1 1.5149 5.5485 0.5276 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596797607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:52 Heat of formation + Delta-G solvation = -16.953520 kcal Electronic energy + Delta-G solvation = -27206.438957 eV Core-core repulsion = 23417.932256 eV Total energy + Delta-G solvation = -3788.506702 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03566 -39.84111 -38.11342 -36.93614 -34.71135 -33.41831 -32.94036 -31.93991 -30.28472 -29.71212 -28.30526 -26.51896 -25.14904 -24.65972 -22.90786 -22.17067 -21.92803 -20.27090 -19.19674 -18.32428 -17.87097 -16.99279 -16.45794 -16.20286 -16.01034 -15.16051 -14.92537 -14.48600 -14.38475 -14.12455 -14.08512 -13.86120 -13.59118 -13.18739 -12.99158 -12.66788 -12.61950 -12.47656 -12.40112 -12.34528 -12.02770 -11.84313 -11.34572 -11.04415 -10.97481 -10.57017 -10.48452 -10.40514 -10.27620 -9.96196 -9.92891 -9.47872 -9.19646 -9.13598 -8.97724 -8.47514 -7.99581 -7.54010 -6.02994 -4.12090 1.16347 1.43633 2.84892 3.18949 3.29349 3.36879 3.38618 3.47616 3.92166 4.09089 4.16774 4.40672 4.74064 4.99277 5.08646 5.14252 5.21710 5.25444 5.27058 5.36786 5.39717 5.40976 5.50210 5.51720 5.55874 5.82194 5.86747 5.97464 6.04990 6.13696 6.22322 6.43609 6.49224 6.56642 6.71055 6.85685 6.89949 6.94325 7.22212 7.29082 7.31409 7.65812 7.84059 7.88731 7.98726 8.30490 8.34747 8.90135 8.95677 9.53896 11.02074 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.003147 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.319197 B = 8896.285364 C =10119.526872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.311 6.311 3 C 0.287 3.713 4 C -0.168 4.168 5 C -0.069 4.069 6 C 0.101 3.899 7 N -0.681 5.681 8 C 0.699 3.301 9 O -0.563 6.563 10 N -0.614 5.614 11 C 0.112 3.888 12 C -0.133 4.133 13 C -0.111 4.111 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.126 3.874 25 C 0.116 3.884 26 C -0.098 4.098 27 N -0.519 5.519 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.190 0.810 33 H 0.403 0.597 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.264 0.736 41 H 0.126 0.874 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.579 -1.717 1.869 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.219 6.219 3 C 0.107 3.893 4 C -0.189 4.189 5 C -0.096 4.096 6 C 0.002 3.998 7 N -0.331 5.331 8 C 0.401 3.599 9 O -0.440 6.440 10 N -0.349 5.349 11 C -0.012 4.012 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.560 4.560 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.006 3.994 25 C -0.024 4.024 26 C -0.155 4.155 27 N -0.243 5.243 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.160 0.840 32 H 0.206 0.794 33 H 0.242 0.758 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.144 0.856 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.739 -2.851 1.607 19.023 hybrid contribution 1.198 0.756 -0.192 1.430 sum -17.541 -2.095 1.415 17.722 Atomic orbital electron populations 1.22762 0.77944 1.02436 1.02133 1.86241 1.22311 1.24652 1.88694 1.19721 0.89439 0.84227 0.95944 1.21122 0.91423 0.99519 1.06805 1.22607 1.04240 0.88969 0.93788 1.18300 0.92017 0.85664 1.03822 1.42936 1.11521 1.07417 1.71212 1.15974 0.80610 0.84665 0.78634 1.90726 1.60714 1.36640 1.55938 1.47888 1.16042 1.03303 1.67697 1.21580 0.93387 0.88165 0.98092 1.21947 0.98120 0.99052 0.98054 1.21626 0.93325 1.00248 0.99637 1.18912 0.93181 0.90746 0.95168 0.95258 1.21050 0.96994 0.92886 1.45104 0.92326 1.25054 0.98486 0.95111 0.95353 1.69876 1.35962 0.98502 1.47246 0.86595 0.84630 0.78038 0.78745 1.20687 1.21156 1.19926 1.22227 0.74904 1.05492 0.96759 1.20387 0.89569 0.92479 0.99919 1.20603 0.99144 0.92681 1.03096 1.66958 1.40123 0.97777 1.19475 0.92630 0.92637 0.89062 0.84007 0.79369 0.75811 0.91605 0.92330 0.92055 0.92060 0.93082 0.92883 0.92591 0.85638 0.93850 0.90267 0.90193 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -4.11 10.48 -18.98 -0.20 -4.31 16 3 C 0.29 4.19 7.49 -17.14 -0.13 4.06 16 4 C -0.17 -2.48 10.04 -39.30 -0.39 -2.88 16 5 C -0.07 -1.14 9.00 -39.13 -0.35 -1.49 16 6 C 0.10 1.55 6.54 -83.47 -0.55 1.00 16 7 N -0.68 -10.10 5.18 -14.10 -0.07 -10.17 16 8 C 0.70 13.42 8.22 -86.92 -0.71 12.71 16 9 O -0.56 -12.92 12.41 5.29 0.07 -12.86 16 10 N -0.61 -11.54 2.98 -178.76 -0.53 -12.08 16 11 C 0.11 1.57 6.39 -3.71 -0.02 1.54 16 12 C -0.13 -1.97 6.08 -26.61 -0.16 -2.14 16 13 C -0.11 -2.07 5.11 -26.69 -0.14 -2.21 16 14 C 0.04 0.93 2.24 -91.88 -0.21 0.72 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -13.69 8.56 -34.44 -0.30 -13.99 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 19 N -0.88 -24.96 11.39 55.43 0.63 -24.33 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.13 2.91 5.39 -3.93 -0.02 2.89 16 25 C 0.12 1.55 6.80 -82.39 -0.56 0.99 16 26 C -0.10 -0.90 9.86 36.01 0.36 -0.55 16 27 N -0.52 -7.34 9.12 -9.40 -0.09 -7.42 16 28 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.05 0.53 8.10 -51.93 -0.42 0.11 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.19 3.58 5.12 -53.01 -0.27 3.31 16 33 H 0.40 4.63 4.23 -40.82 -0.17 4.45 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.62 5.63 -51.93 -0.29 0.33 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.13 3.41 5.11 -51.93 -0.27 3.15 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.51 6.38 -51.93 -0.33 0.18 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -31.10 358.02 -8.41 -39.52 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.37 Total: 6.69 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.23 Total: 3.73 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.06 Total: -53.99 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.13 Total: -17.17 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.10 -8.41 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596797607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.566 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds