Wall clock time and date at job start Tue Mar 31 2020 12:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38358 * 119.40656 * 2 1 4 4 C 1.38339 * 119.46012 * 179.76604 * 3 2 1 5 5 C 1.39985 * 118.34689 * 0.49768 * 4 3 2 6 6 C 1.47530 * 120.59870 * 179.77767 * 5 4 3 7 7 O 1.21592 * 119.99527 * 126.43623 * 6 5 4 8 8 N 1.34775 * 120.00109 * 306.44528 * 6 5 4 9 9 C 1.46929 * 120.62814 * 353.79071 * 8 6 5 10 10 C 1.52756 * 109.00979 * 233.58657 * 9 8 6 11 11 C 1.53038 * 109.38266 * 305.59197 * 10 9 8 12 12 C 1.53041 * 109.53898 * 61.24133 * 11 10 9 13 13 H 1.08993 * 109.52907 * 58.60473 * 12 11 10 14 14 N 1.46509 * 109.49718 * 178.68374 * 12 11 10 15 15 C 1.46501 * 120.00040 * 59.83605 * 14 12 11 16 16 C 1.36933 * 119.99732 * 239.83337 * 14 12 11 17 17 H 1.08000 * 120.00236 * 24.88866 * 16 14 12 18 18 C 1.38817 * 119.99669 * 204.88470 * 16 14 12 19 19 N 1.31612 * 120.00159 * 5.65499 * 18 16 14 20 20 Si 1.86798 * 119.99679 * 185.65525 * 18 16 14 21 21 H 1.48504 * 109.47438 * 60.00235 * 20 18 16 22 22 H 1.48504 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47162 * 300.00023 * 20 18 16 24 24 C 1.46922 * 120.62958 * 174.07510 * 8 6 5 25 25 C 1.40286 * 118.80881 * 359.50910 * 5 4 3 26 26 O 1.35423 * 119.80067 * 180.27422 * 25 5 4 27 27 N 1.31879 * 119.41181 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46902 * 269.97468 * 1 2 3 29 29 H 1.08993 * 109.47194 * 29.97901 * 1 2 3 30 30 H 1.09006 * 109.46687 * 149.97709 * 1 2 3 31 31 H 1.07998 * 120.27215 * 0.04582 * 3 2 1 32 32 H 1.07993 * 120.82922 * 180.25796 * 4 3 2 33 33 H 1.09002 * 109.58723 * 353.42223 * 9 8 6 34 34 H 1.09003 * 109.58063 * 113.84536 * 9 8 6 35 35 H 1.08995 * 109.56803 * 185.55574 * 10 9 8 36 36 H 1.09001 * 109.38355 * 65.51647 * 10 9 8 37 37 H 1.09000 * 109.46365 * 301.21829 * 11 10 9 38 38 H 1.09001 * 109.46306 * 181.25787 * 11 10 9 39 39 H 1.09004 * 109.47070 * 95.02754 * 15 14 12 40 40 H 1.08991 * 109.47089 * 215.03495 * 15 14 12 41 41 H 1.09007 * 109.46974 * 335.03106 * 15 14 12 42 42 H 0.97005 * 120.00211 * 179.97438 * 19 18 16 43 43 H 1.09002 * 109.58558 * 246.14910 * 24 8 6 44 44 H 1.09000 * 109.58938 * 6.57920 * 24 8 6 45 45 H 0.96702 * 114.00348 * 89.99971 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 0.0049 5 6 4.2356 -0.0247 -0.0009 6 6 5.7098 -0.0813 -0.0010 7 8 6.2931 -0.7337 0.8431 8 7 6.4099 0.5903 -0.9366 9 6 5.7212 1.2710 -2.0417 10 6 6.3153 0.7956 -3.3663 11 6 7.8313 1.0035 -3.3467 12 6 8.4468 0.1772 -2.2151 13 1 8.2070 -0.8760 -2.3611 14 7 9.9013 0.3523 -2.2170 15 6 10.4787 1.6869 -2.0385 16 6 10.7212 -0.7314 -2.3855 17 1 10.3580 -1.6084 -2.9007 18 6 12.0192 -0.7028 -1.8943 19 7 12.4267 0.3184 -1.1709 20 14 13.1875 -2.1137 -2.2599 21 1 13.3627 -2.2434 -3.7289 22 1 14.5031 -1.8441 -1.6260 23 1 12.6254 -3.3757 -1.7152 24 6 7.8765 0.6503 -0.8743 25 6 3.4758 -1.2041 -0.0010 26 8 4.0993 -2.4063 -0.0010 27 7 2.1546 -1.1488 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6411 2.1376 0.0007 32 1 4.1223 2.1345 0.0092 33 1 4.6582 1.0314 -2.0126 34 1 5.8578 2.3484 -1.9488 35 1 5.8804 1.3659 -4.1870 36 1 6.0950 -0.2633 -3.5022 37 1 8.0511 2.0591 -3.1865 38 1 8.2539 0.6855 -4.2998 39 1 10.7232 1.8393 -0.9872 40 1 11.3843 1.7742 -2.6386 41 1 9.7578 2.4401 -2.3567 42 1 13.3336 0.3382 -0.8272 43 1 8.1925 1.6762 -0.6844 44 1 8.2352 0.0015 -0.0753 45 1 4.2803 -2.7555 0.8824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027594635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:05 Heat of formation + Delta-G solvation = -9.575559 kcal Electronic energy + Delta-G solvation = -27514.694001 eV Core-core repulsion = 23726.507231 eV Total energy + Delta-G solvation = -3788.186769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11502 -39.48236 -37.58992 -37.15112 -35.12239 -33.46497 -32.16463 -31.87233 -31.28100 -29.03113 -28.02283 -25.99620 -25.19614 -23.86123 -23.33399 -22.86943 -21.64793 -20.11255 -18.86957 -18.66340 -17.42995 -17.03446 -16.72882 -15.99819 -15.86299 -15.13296 -14.87922 -14.57628 -14.27199 -14.13789 -13.89480 -13.75176 -13.50973 -13.38677 -12.98314 -12.66723 -12.60098 -12.46328 -12.40116 -12.26413 -11.86641 -11.81909 -11.20916 -11.00164 -10.76474 -10.66223 -10.37831 -10.35033 -10.20334 -10.18051 -10.05509 -9.83805 -9.74193 -9.48711 -9.02718 -8.56807 -8.34809 -6.72369 -5.70480 -3.19382 0.47461 0.83881 2.69124 3.06091 3.23587 3.41901 3.46283 3.47449 3.52617 4.21290 4.35426 4.46703 4.50937 4.68502 4.92099 4.98241 5.07896 5.13250 5.20099 5.26142 5.30421 5.44711 5.52046 5.55752 5.60756 5.66662 5.68932 5.76684 5.90795 5.98876 6.13080 6.15218 6.23093 6.38003 6.49360 6.66159 6.78249 6.93154 6.99015 7.31597 7.42267 7.56127 7.64284 7.76057 7.83523 8.27927 8.43295 9.26339 9.87166 10.36442 11.33759 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023050 B = 0.003194 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.447960 B = 8764.806249 C = 9277.728333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.165 3.835 3 C -0.189 4.189 4 C -0.027 4.027 5 C -0.194 4.194 6 C 0.567 3.433 7 O -0.530 6.530 8 N -0.597 5.597 9 C 0.107 3.893 10 C -0.131 4.131 11 C -0.133 4.133 12 C 0.169 3.831 13 H 0.065 0.935 14 N -0.592 5.592 15 C 0.163 3.837 16 C -0.256 4.256 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.909 5.909 20 Si 0.907 3.093 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.099 3.901 25 C 0.363 3.637 26 O -0.472 6.472 27 N -0.506 5.506 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.029 0.971 40 H 0.045 0.955 41 H -0.003 1.003 42 H 0.253 0.747 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.363 5.655 0.628 24.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.209 4.209 4 C -0.053 4.053 5 C -0.200 4.200 6 C 0.353 3.647 7 O -0.407 6.407 8 N -0.330 5.330 9 C -0.016 4.016 10 C -0.170 4.170 11 C -0.172 4.172 12 C 0.059 3.941 13 H 0.084 0.916 14 N -0.314 5.314 15 C 0.019 3.981 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.193 4.193 19 N -0.554 5.554 20 Si 0.737 3.263 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.024 4.024 25 C 0.184 3.816 26 O -0.280 6.280 27 N -0.226 5.226 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.111 0.889 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -23.227 4.579 0.558 23.680 hybrid contribution 1.286 -0.003 0.323 1.326 sum -21.941 4.577 0.881 22.430 Atomic orbital electron populations 1.20805 0.88223 1.03920 1.03488 1.21224 0.97008 0.87214 0.91929 1.21880 0.94366 0.99544 1.05075 1.21697 0.94340 0.97047 0.92252 1.21131 0.95475 0.94515 1.08907 1.17847 0.85643 0.79379 0.81844 1.90800 1.70601 1.40832 1.38486 1.48208 1.08222 1.51566 1.24992 1.21726 0.96368 0.96738 0.86814 1.21825 0.97415 1.01835 0.95937 1.22090 0.92985 1.01180 1.00991 1.20635 0.85036 0.97730 0.90677 0.91642 1.43904 0.98593 1.04613 1.84291 1.20821 0.94470 0.83063 0.99796 1.19183 0.93832 0.95347 1.30161 0.91481 1.25120 0.98770 0.97719 0.97736 1.70034 1.17546 1.30334 1.37450 0.86302 0.80152 0.82096 0.77774 1.21056 1.21605 1.20853 1.22608 0.75591 1.02016 1.02209 1.19033 0.86098 0.84908 0.91598 1.84660 1.76511 1.32325 1.34534 1.67089 1.09267 1.30469 1.15728 0.89925 0.90182 0.90124 0.83798 0.83720 0.90600 0.91386 0.91158 0.91710 0.92202 0.91633 0.95236 0.93645 0.98490 0.93661 0.91829 0.88899 0.72975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.16 36.00 0.37 -0.25 16 2 C 0.16 1.55 6.78 -82.53 -0.56 0.99 16 3 C -0.19 -1.50 9.71 -39.50 -0.38 -1.89 16 4 C -0.03 -0.27 7.93 -38.89 -0.31 -0.58 16 5 C -0.19 -2.60 4.62 -104.69 -0.48 -3.09 16 6 C 0.57 9.55 6.86 -12.47 -0.09 9.46 16 7 O -0.53 -10.87 16.16 1.56 0.03 -10.85 16 8 N -0.60 -9.60 2.98 -174.26 -0.52 -10.12 16 9 C 0.11 1.31 5.57 -3.93 -0.02 1.29 16 10 C -0.13 -1.73 6.06 -26.84 -0.16 -1.89 16 11 C -0.13 -2.21 5.13 -26.69 -0.14 -2.35 16 12 C 0.17 3.49 2.74 -67.80 -0.19 3.30 16 13 H 0.07 1.47 7.88 -51.93 -0.41 1.06 16 14 N -0.59 -14.80 2.82 -173.34 -0.49 -15.28 16 15 C 0.16 3.95 7.89 59.85 0.47 4.43 16 16 C -0.26 -7.11 9.59 -15.06 -0.14 -7.25 16 17 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.00 0.14 5.24 -17.43 -0.09 0.05 16 19 N -0.91 -26.60 10.45 55.49 0.58 -26.02 16 20 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.10 1.93 5.80 -3.71 -0.02 1.91 16 25 C 0.36 5.04 7.76 -16.61 -0.13 4.91 16 26 O -0.47 -6.76 12.75 -21.69 -0.28 -7.04 16 27 N -0.51 -6.35 10.28 -9.21 -0.09 -6.45 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.15 1.16 7.80 -52.49 -0.41 0.75 16 33 H 0.08 0.82 5.40 -51.93 -0.28 0.54 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 40 H 0.04 1.19 7.26 -51.93 -0.38 0.82 16 41 H 0.00 -0.07 6.45 -51.93 -0.34 -0.40 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.06 1.22 7.52 -51.93 -0.39 0.83 16 44 H 0.09 2.13 7.00 -51.93 -0.36 1.77 16 45 H 0.41 4.38 9.06 45.56 0.41 4.79 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -34.24 361.67 -8.03 -42.27 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.80 Total: 1.77 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -1.88 Total: 9.03 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.52 Total: -57.86 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.25 Total: -17.89 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.24 -8.03 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027594635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.691 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds