Wall clock time and date at job start Tue Mar 31 2020 12:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35650 * 117.00450 * 2 1 4 4 C 1.39344 * 120.53764 * 0.27773 * 3 2 1 5 5 C 1.38302 * 118.43570 * 180.25992 * 4 3 2 6 6 C 1.50703 * 120.27500 * 179.70399 * 5 4 3 7 7 C 1.38760 * 119.44656 * 359.73170 * 5 4 3 8 8 N 1.31375 * 121.06798 * 359.97438 * 7 5 4 9 9 C 1.32854 * 121.69466 * 359.97438 * 8 7 5 10 10 C 1.47841 * 119.78331 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99626 * 174.91241 * 10 9 8 12 12 N 1.34769 * 119.99707 * 354.92219 * 10 9 8 13 13 C 1.46491 * 120.00516 * 4.99501 * 12 10 9 14 14 C 1.46504 * 119.99580 * 184.99917 * 12 10 9 15 15 C 1.53000 * 109.47121 * 276.08937 * 14 12 10 16 16 H 1.08998 * 112.96339 * 50.79145 * 15 14 12 17 17 C 1.53940 * 113.76924 * 182.46540 * 15 14 12 18 18 C 1.53945 * 86.29093 * 137.91138 * 17 15 14 19 19 N 1.47577 * 113.77042 * 279.11323 * 15 14 12 20 20 C 1.36937 * 134.49862 * 41.06306 * 19 15 14 21 21 H 1.08007 * 119.99616 * 8.53138 * 20 19 15 22 22 C 1.38802 * 120.00487 * 188.53021 * 20 19 15 23 23 N 1.31618 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47442 * 89.99848 * 24 22 20 26 26 H 1.48497 * 109.47279 * 209.99749 * 24 22 20 27 27 H 1.48501 * 109.46888 * 329.99776 * 24 22 20 28 28 H 1.09011 * 109.46955 * 299.99899 * 1 2 3 29 29 H 1.09000 * 109.47269 * 59.99291 * 1 2 3 30 30 H 1.08997 * 109.48006 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.78366 * 359.96595 * 4 3 2 32 32 H 1.08994 * 109.47356 * 270.02195 * 6 5 4 33 33 H 1.08997 * 109.47244 * 30.02781 * 6 5 4 34 34 H 1.09004 * 109.46635 * 150.02507 * 6 5 4 35 35 H 1.08002 * 119.47075 * 179.97438 * 7 5 4 36 36 H 1.09006 * 109.47213 * 59.28132 * 13 12 10 37 37 H 1.09001 * 109.47262 * 299.28205 * 13 12 10 38 38 H 1.09003 * 109.47611 * 179.28452 * 13 12 10 39 39 H 1.08993 * 109.47181 * 36.09307 * 14 12 10 40 40 H 1.09007 * 109.47220 * 156.09485 * 14 12 10 41 41 H 1.08997 * 113.74598 * 252.25625 * 17 15 14 42 42 H 1.09011 * 113.74502 * 23.46051 * 17 15 14 43 43 H 1.08996 * 113.77262 * 90.69136 * 18 17 15 44 44 H 1.09005 * 113.77198 * 221.98348 * 18 17 15 45 45 H 0.96998 * 120.00517 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3844 0.0058 5 6 1.9698 3.5927 0.0001 6 6 1.2022 4.8896 -0.0007 7 6 3.3573 3.6010 -0.0056 8 7 4.0420 2.4798 -0.0050 9 6 3.4410 1.2949 0.0014 10 6 4.2531 0.0596 0.0012 11 8 3.7112 -1.0240 0.1004 12 7 5.5942 0.1349 -0.1088 13 6 6.2563 1.4416 -0.1180 14 6 6.3900 -1.0903 -0.2194 15 6 6.6592 -1.6514 1.1783 16 1 5.7550 -1.7471 1.7795 17 6 7.5426 -2.9121 1.1812 18 6 8.2575 -2.2867 2.3928 19 7 7.7736 -0.9869 1.8816 20 6 8.1908 0.3112 2.0081 21 1 7.5731 1.1155 1.6365 22 6 9.4073 0.5934 2.6138 23 7 10.1598 -0.3867 3.0672 24 14 9.9760 2.3643 2.7870 25 1 9.4883 2.9171 4.0761 26 1 11.4599 2.4128 2.7574 27 1 9.4319 3.1708 1.6650 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 0.2176 2.3528 0.0099 32 1 1.0130 5.1993 -1.0285 33 1 0.2533 4.7506 0.5174 34 1 1.7851 5.6571 0.5085 35 1 3.8831 4.5444 -0.0105 36 1 6.0282 1.9710 0.8072 37 1 5.8991 2.0240 -0.9674 38 1 7.3342 1.3023 -0.2007 39 1 5.8429 -1.8270 -0.8075 40 1 7.3374 -0.8652 -0.7092 41 1 7.0000 -3.8277 1.4164 42 1 8.1742 -3.0075 0.2980 43 1 7.8238 -2.5683 3.3523 44 1 9.3417 -2.3959 2.3676 45 1 11.0102 -0.1896 3.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:33 Heat of formation + Delta-G solvation = 44.920373 kcal Electronic energy + Delta-G solvation = -27714.216975 eV Core-core repulsion = 23928.393327 eV Total energy + Delta-G solvation = -3785.823648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04421 -39.07158 -38.33893 -37.48961 -34.81417 -33.80867 -32.10513 -31.07843 -28.92027 -28.13303 -27.74356 -27.01678 -25.77685 -23.55467 -23.16897 -22.87828 -21.91082 -19.70156 -18.91447 -17.72389 -17.48951 -16.98352 -16.55441 -16.08772 -15.57465 -15.10685 -14.87116 -14.70098 -14.24240 -14.20476 -13.88477 -13.80035 -13.51239 -13.18785 -12.85758 -12.76229 -12.66695 -12.44147 -12.28858 -11.82005 -11.59113 -11.57325 -11.30176 -11.22582 -10.96891 -10.80402 -10.58720 -10.42311 -9.88521 -9.80868 -9.69535 -9.55576 -9.22883 -9.10933 -8.61900 -8.52418 -7.90539 -6.68668 -5.62482 -2.95247 0.61868 1.11540 2.99275 3.01583 3.43908 3.45679 3.48882 3.51218 3.90833 4.22090 4.37859 4.52719 4.55216 4.70804 4.76522 4.84151 4.91339 5.19490 5.21127 5.25832 5.30225 5.33013 5.55077 5.60981 5.67599 5.82038 5.90045 5.97679 6.04184 6.14530 6.20185 6.27334 6.30905 6.42834 6.61690 6.70300 6.80197 6.88647 7.06879 7.18297 7.43210 7.62330 7.72570 7.75174 7.97164 8.14531 8.66153 9.18190 9.85653 10.79065 11.53692 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.004308 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.699650 B = 6498.305428 C = 8074.486892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.271 6.271 3 C 0.139 3.861 4 C -0.182 4.182 5 C -0.079 4.079 6 C -0.113 4.113 7 C 0.052 3.948 8 N -0.404 5.404 9 C 0.047 3.953 10 C 0.564 3.436 11 O -0.527 6.527 12 N -0.582 5.582 13 C 0.101 3.899 14 C 0.121 3.879 15 C 0.129 3.871 16 H 0.048 0.952 17 C -0.157 4.157 18 C 0.150 3.850 19 N -0.602 5.602 20 C -0.218 4.218 21 H 0.088 0.912 22 C -0.011 4.011 23 N -0.921 5.921 24 Si 0.902 3.098 25 H -0.292 1.292 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.163 0.837 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.019 0.981 44 H 0.080 0.920 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.262 7.034 -9.091 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.088 3.912 4 C -0.208 4.208 5 C -0.082 4.082 6 C -0.170 4.170 7 C -0.109 4.109 8 N -0.115 5.115 9 C -0.092 4.092 10 C 0.350 3.650 11 O -0.403 6.403 12 N -0.313 5.313 13 C -0.042 4.042 14 C -0.002 4.002 15 C 0.022 3.978 16 H 0.065 0.935 17 C -0.196 4.196 18 C 0.025 3.975 19 N -0.328 5.328 20 C -0.346 4.346 21 H 0.106 0.894 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.160 0.840 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.180 0.820 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.297 6.473 -8.956 21.375 hybrid contribution -0.887 1.340 0.471 1.674 sum -19.184 7.812 -8.486 22.384 Atomic orbital electron populations 1.23188 0.78884 1.04533 1.00974 1.86444 1.20599 1.24566 1.86444 1.20031 0.92275 0.85539 0.93349 1.21558 1.00669 0.91311 1.07303 1.20966 0.95312 0.95613 0.96279 1.20796 0.99833 0.93526 1.02885 1.22737 0.90522 0.96903 1.00725 1.68297 1.38371 0.97313 1.07489 1.20835 0.88503 0.93217 1.06689 1.17596 0.82154 0.87042 0.78250 1.90788 1.71589 1.27797 1.50151 1.47619 1.05080 1.08648 1.69934 1.22096 0.97653 0.82707 1.01732 1.21959 0.94506 0.85223 0.98546 1.22613 0.92407 0.90897 0.91931 0.93453 1.23731 0.99097 0.95727 1.01036 1.22348 0.99791 0.83574 0.91815 1.46133 1.27779 1.02531 1.56404 1.19353 1.00206 0.82095 1.32957 0.89440 1.24787 0.97062 0.97024 1.01827 1.69817 1.12863 1.29443 1.44753 0.86261 0.77856 0.84701 0.77895 1.21942 1.21819 1.20437 0.92648 0.92730 0.87717 0.83950 0.90416 0.91203 0.90561 0.82010 0.91493 0.92553 0.90186 0.91057 0.89746 0.93150 0.90758 0.96327 0.90173 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 101.05 0.99 1.17 16 2 O -0.27 -4.00 8.58 -40.53 -0.35 -4.35 16 3 C 0.14 2.02 6.71 -38.56 -0.26 1.76 16 4 C -0.18 -1.94 8.80 -39.15 -0.34 -2.29 16 5 C -0.08 -0.78 5.90 -104.40 -0.62 -1.39 16 6 C -0.11 -0.67 10.03 36.01 0.36 -0.31 16 7 C 0.05 0.60 10.85 -17.55 -0.19 0.41 16 8 N -0.40 -6.19 5.97 -9.71 -0.06 -6.25 16 9 C 0.05 0.79 6.69 -82.88 -0.55 0.24 16 10 C 0.56 11.22 7.59 -12.33 -0.09 11.13 16 11 O -0.53 -11.55 14.89 -16.57 -0.25 -11.80 16 12 N -0.58 -11.44 2.89 -182.70 -0.53 -11.97 16 13 C 0.10 1.85 7.12 59.84 0.43 2.28 16 14 C 0.12 2.39 5.17 -4.04 -0.02 2.37 16 15 C 0.13 2.89 4.49 -66.87 -0.30 2.59 16 16 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.16 -3.21 7.86 -25.80 -0.20 -3.41 16 18 C 0.15 3.71 7.75 -2.84 -0.02 3.69 16 19 N -0.60 -15.74 3.58 -169.72 -0.61 -16.34 16 20 C -0.22 -6.03 9.78 -15.06 -0.15 -6.18 16 21 H 0.09 2.29 4.22 -52.48 -0.22 2.07 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 23 N -0.92 -27.67 11.28 55.49 0.63 -27.04 16 24 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H 0.05 0.40 7.69 -51.92 -0.40 0.00 16 29 H 0.05 0.37 7.71 -51.93 -0.40 -0.03 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.14 1.07 6.46 -52.49 -0.34 0.73 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.08 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.07 1.31 6.55 -51.93 -0.34 0.97 16 37 H 0.06 0.92 6.94 -51.93 -0.36 0.56 16 38 H 0.08 1.56 6.42 -51.93 -0.33 1.23 16 39 H 0.07 1.33 7.69 -51.93 -0.40 0.93 16 40 H 0.08 1.66 7.80 -51.93 -0.41 1.25 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.44 8.10 -51.92 -0.42 1.02 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 2.16 6.84 -51.93 -0.35 1.80 16 45 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -35.03 361.79 -8.28 -43.32 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.49 Total: 0.16 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -1.07 Total: 11.64 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.57 Total: -61.60 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.59 Total: -16.15 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.03 -8.28 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.238 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds