Wall clock time and date at job start Tue Mar 31 2020 12:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35650 * 117.00450 * 2 1 4 4 C 1.39344 * 120.53764 * 0.27773 * 3 2 1 5 5 C 1.38302 * 118.43570 * 180.25992 * 4 3 2 6 6 C 1.50703 * 120.27500 * 179.70399 * 5 4 3 7 7 C 1.38760 * 119.44656 * 359.73170 * 5 4 3 8 8 N 1.31375 * 121.06798 * 359.97438 * 7 5 4 9 9 C 1.32854 * 121.69466 * 359.97438 * 8 7 5 10 10 C 1.47841 * 119.78331 * 179.97438 * 9 8 7 11 11 O 1.21556 * 119.99626 * 174.91241 * 10 9 8 12 12 N 1.34769 * 119.99707 * 354.92219 * 10 9 8 13 13 C 1.46491 * 120.00516 * 4.99501 * 12 10 9 14 14 C 1.46504 * 119.99580 * 184.99917 * 12 10 9 15 15 C 1.53000 * 109.47121 * 276.08937 * 14 12 10 16 16 H 1.08998 * 112.96339 * 50.79145 * 15 14 12 17 17 C 1.53940 * 113.76924 * 182.46540 * 15 14 12 18 18 C 1.53945 * 86.29093 * 137.91138 * 17 15 14 19 19 N 1.47577 * 113.77042 * 279.11323 * 15 14 12 20 20 C 1.36937 * 134.49862 * 41.06306 * 19 15 14 21 21 H 1.08007 * 119.99616 * 8.53138 * 20 19 15 22 22 C 1.38802 * 120.00487 * 188.53021 * 20 19 15 23 23 N 1.31618 * 120.00249 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47442 * 89.99848 * 24 22 20 26 26 H 1.48497 * 109.47279 * 209.99749 * 24 22 20 27 27 H 1.48501 * 109.46888 * 329.99776 * 24 22 20 28 28 H 1.09011 * 109.46955 * 299.99899 * 1 2 3 29 29 H 1.09000 * 109.47269 * 59.99291 * 1 2 3 30 30 H 1.08997 * 109.48006 * 180.02562 * 1 2 3 31 31 H 1.07995 * 120.78366 * 359.96595 * 4 3 2 32 32 H 1.08994 * 109.47356 * 270.02195 * 6 5 4 33 33 H 1.08997 * 109.47244 * 30.02781 * 6 5 4 34 34 H 1.09004 * 109.46635 * 150.02507 * 6 5 4 35 35 H 1.08002 * 119.47075 * 179.97438 * 7 5 4 36 36 H 1.09006 * 109.47213 * 59.28132 * 13 12 10 37 37 H 1.09001 * 109.47262 * 299.28205 * 13 12 10 38 38 H 1.09003 * 109.47611 * 179.28452 * 13 12 10 39 39 H 1.08993 * 109.47181 * 36.09307 * 14 12 10 40 40 H 1.09007 * 109.47220 * 156.09485 * 14 12 10 41 41 H 1.08997 * 113.74598 * 252.25625 * 17 15 14 42 42 H 1.09011 * 113.74502 * 23.46051 * 17 15 14 43 43 H 1.08996 * 113.77262 * 90.69136 * 18 17 15 44 44 H 1.09005 * 113.77198 * 221.98348 * 18 17 15 45 45 H 0.96998 * 120.00517 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3844 0.0058 5 6 1.9698 3.5927 0.0001 6 6 1.2022 4.8896 -0.0007 7 6 3.3573 3.6010 -0.0056 8 7 4.0420 2.4798 -0.0050 9 6 3.4410 1.2949 0.0014 10 6 4.2531 0.0596 0.0012 11 8 3.7112 -1.0240 0.1004 12 7 5.5942 0.1349 -0.1088 13 6 6.2563 1.4416 -0.1180 14 6 6.3900 -1.0903 -0.2194 15 6 6.6592 -1.6514 1.1783 16 1 5.7550 -1.7471 1.7795 17 6 7.5426 -2.9121 1.1812 18 6 8.2575 -2.2867 2.3928 19 7 7.7736 -0.9869 1.8816 20 6 8.1908 0.3112 2.0081 21 1 7.5731 1.1155 1.6365 22 6 9.4073 0.5934 2.6138 23 7 10.1598 -0.3867 3.0672 24 14 9.9760 2.3643 2.7870 25 1 9.4883 2.9171 4.0761 26 1 11.4599 2.4128 2.7574 27 1 9.4319 3.1708 1.6650 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 0.2176 2.3528 0.0099 32 1 1.0130 5.1993 -1.0285 33 1 0.2533 4.7506 0.5174 34 1 1.7851 5.6571 0.5085 35 1 3.8831 4.5444 -0.0105 36 1 6.0282 1.9710 0.8072 37 1 5.8991 2.0240 -0.9674 38 1 7.3342 1.3023 -0.2007 39 1 5.8429 -1.8270 -0.8075 40 1 7.3374 -0.8652 -0.7092 41 1 7.0000 -3.8277 1.4164 42 1 8.1742 -3.0075 0.2980 43 1 7.8238 -2.5683 3.3523 44 1 9.3417 -2.3959 2.3676 45 1 11.0102 -0.1896 3.4901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:33 Heat of formation + Delta-G solvation = 22.835547 kcal Electronic energy + Delta-G solvation = -27715.174645 eV Core-core repulsion = 23928.393327 eV Total energy + Delta-G solvation = -3786.781318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07957 -40.53972 -39.33833 -39.21288 -36.32724 -34.72003 -34.19875 -32.01988 -30.40684 -29.72436 -28.88073 -28.10709 -27.18399 -25.22033 -24.70241 -24.07832 -23.08686 -21.10729 -20.76708 -18.87515 -18.59519 -18.52467 -17.96201 -17.14625 -17.04460 -16.66178 -16.45378 -16.06375 -15.72189 -15.34677 -15.05761 -14.78402 -14.68268 -14.66267 -14.42953 -13.83178 -13.60004 -13.53801 -13.47091 -13.14812 -13.03860 -12.91958 -12.86046 -12.61516 -12.45780 -12.38246 -12.36366 -12.23783 -11.71992 -11.45769 -11.25097 -11.13229 -10.73420 -10.50182 -10.32407 -9.67227 -9.33731 -8.78984 -7.78835 -5.13630 -0.37423 0.22045 1.47305 1.49095 1.57655 1.75008 2.03599 2.21312 2.52613 2.78252 3.16632 3.37864 3.45470 3.54477 3.66360 3.91429 3.99263 4.05236 4.19127 4.23713 4.31336 4.33902 4.37343 4.49652 4.59061 4.63200 4.68960 4.72175 4.82619 4.85376 4.86898 4.94489 5.01644 5.05637 5.09732 5.18795 5.20934 5.38793 5.49541 5.61245 5.66237 5.77650 6.03567 6.20661 6.45554 6.76404 7.01535 7.20979 7.72020 8.69229 9.37464 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.004308 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.699650 B = 6498.305428 C = 8074.486892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.132 3.868 4 C -0.177 4.177 5 C -0.059 4.059 6 C -0.111 4.111 7 C 0.044 3.956 8 N -0.427 5.427 9 C -0.004 4.004 10 C 0.557 3.443 11 O -0.560 6.560 12 N -0.592 5.592 13 C 0.116 3.884 14 C 0.129 3.871 15 C 0.130 3.870 16 H 0.025 0.975 17 C -0.129 4.129 18 C 0.142 3.858 19 N -0.624 5.624 20 C -0.220 4.220 21 H 0.098 0.902 22 C -0.072 4.072 23 N -0.956 5.956 24 Si 0.965 3.035 25 H -0.295 1.295 26 H -0.297 1.297 27 H -0.256 1.256 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.179 0.821 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.191 0.809 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.007 0.993 44 H 0.055 0.945 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.911 9.653 -10.382 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.219 6.219 3 C 0.081 3.919 4 C -0.203 4.203 5 C -0.061 4.061 6 C -0.168 4.168 7 C -0.118 4.118 8 N -0.139 5.139 9 C -0.140 4.140 10 C 0.345 3.655 11 O -0.439 6.439 12 N -0.322 5.322 13 C -0.026 4.026 14 C 0.006 3.994 15 C 0.023 3.977 16 H 0.043 0.957 17 C -0.167 4.167 18 C 0.016 3.984 19 N -0.350 5.350 20 C -0.348 4.348 21 H 0.115 0.885 22 C -0.264 4.264 23 N -0.606 5.606 24 Si 0.794 3.206 25 H -0.223 1.223 26 H -0.224 1.224 27 H -0.180 1.180 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.131 0.869 31 H 0.196 0.804 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.207 0.793 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -20.982 9.083 -10.274 25.065 hybrid contribution -0.263 0.599 0.888 1.103 sum -21.244 9.682 -9.385 25.162 Atomic orbital electron populations 1.23517 0.76152 1.05872 1.02895 1.86384 1.23606 1.25442 1.86467 1.20183 0.91788 0.86774 0.93176 1.21960 1.02242 0.90077 1.05987 1.21455 0.94830 0.97140 0.92680 1.20935 1.00126 0.91317 1.04450 1.23340 0.91884 0.96684 0.99900 1.68110 1.39634 0.97724 1.08386 1.20435 0.89419 0.92616 1.11531 1.18162 0.82140 0.88076 0.77079 1.90734 1.72137 1.29351 1.51663 1.47724 1.05426 1.08722 1.70326 1.21939 0.96401 0.82373 1.01909 1.21775 0.94917 0.85961 0.96779 1.22629 0.90834 0.91618 0.92587 0.95750 1.23527 0.97957 0.95944 0.99314 1.22312 0.98594 0.84275 0.93170 1.46518 1.28911 1.02543 1.57013 1.19798 1.00140 0.83281 1.31615 0.88458 1.25601 0.97496 1.00918 1.02387 1.70022 1.13022 1.31367 1.46206 0.85259 0.76826 0.80411 0.78138 1.22314 1.22361 1.18034 0.90918 0.90394 0.86921 0.80398 0.88518 0.89520 0.89270 0.79269 0.92868 0.90479 0.91729 0.89865 0.89597 0.90238 0.89171 0.97561 0.92666 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.27 16 2 O -0.31 -9.02 8.58 -68.73 -0.59 -9.61 16 3 C 0.13 3.73 6.71 22.93 0.15 3.88 16 4 C -0.18 -3.22 8.80 22.55 0.20 -3.02 16 5 C -0.06 -0.93 5.90 -19.72 -0.12 -1.05 16 6 C -0.11 -0.74 10.03 71.24 0.71 -0.02 16 7 C 0.04 0.92 10.85 84.89 0.92 1.84 16 8 N -0.43 -12.78 5.97 -184.63 -1.10 -13.89 16 9 C 0.00 -0.13 6.69 41.93 0.28 0.15 16 10 C 0.56 22.84 7.59 86.79 0.66 23.50 16 11 O -0.56 -25.46 14.89 17.03 0.25 -25.21 16 12 N -0.59 -23.73 2.89 -850.21 -2.45 -26.19 16 13 C 0.12 4.30 7.12 127.77 0.91 5.21 16 14 C 0.13 5.18 5.17 86.38 0.45 5.62 16 15 C 0.13 5.93 4.49 45.09 0.20 6.14 16 16 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 17 C -0.13 -5.24 7.86 31.25 0.25 -4.99 16 18 C 0.14 7.25 7.75 86.43 0.67 7.92 16 19 N -0.62 -33.41 3.58 -690.88 -2.47 -35.88 16 20 C -0.22 -12.39 9.78 84.03 0.82 -11.57 16 21 H 0.10 5.17 4.22 -2.91 -0.01 5.15 16 22 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 23 N -0.96 -59.24 11.28 21.65 0.24 -59.00 16 24 Si 0.96 46.24 29.55 68.60 2.03 48.27 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 28 H 0.07 0.86 7.69 -2.38 -0.02 0.84 16 29 H 0.08 0.82 7.71 -2.39 -0.02 0.80 16 30 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.18 1.84 6.46 -2.91 -0.02 1.82 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.09 0.37 8.09 -2.39 -0.02 0.35 16 34 H 0.09 0.44 8.09 -2.38 -0.02 0.42 16 35 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.05 2.10 6.55 -2.38 -0.02 2.08 16 37 H 0.08 2.49 6.94 -2.39 -0.02 2.47 16 38 H 0.06 2.54 6.42 -2.39 -0.02 2.53 16 39 H 0.08 3.12 7.69 -2.39 -0.02 3.10 16 40 H 0.09 3.39 7.80 -2.38 -0.02 3.37 16 41 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.09 3.40 8.10 -2.38 -0.02 3.38 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.06 3.09 6.84 -2.38 -0.02 3.08 16 45 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -80.37 361.79 4.60 -75.77 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.00 Total: 14.56 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 7.69 Total: 31.16 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -5.78 Total: -134.94 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.34 Total: -34.82 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -80.37 4.60 -75.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.610 kcal (2) G-P(sol) polarization free energy of solvation -80.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds